Wall clock time and date at job start Tue Mar 31 2020 19:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99931 * 2 1 4 4 H 1.48503 * 109.46908 * 240.00272 * 3 2 1 5 5 H 1.48502 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46998 * 119.99884 * 3 2 1 7 7 C 1.39942 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00111 * 197.84453 * 7 2 1 9 9 C 1.41398 * 120.00019 * 17.85099 * 7 2 1 10 10 C 1.40720 * 120.24202 * 204.38542 * 9 7 2 11 11 C 1.37619 * 119.74291 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24813 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75133 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46821 * 89.99949 * 13 12 11 15 15 S 1.65602 * 119.99488 * 165.00247 * 14 13 12 16 16 O 1.42101 * 106.40427 * 311.46346 * 15 14 13 17 17 O 1.42099 * 106.40270 * 178.53962 * 15 14 13 18 18 C 1.76208 * 107.21882 * 65.00297 * 15 14 13 19 19 C 1.38243 * 119.97403 * 269.72626 * 18 15 14 20 20 C 1.38200 * 120.02402 * 179.72575 * 19 18 15 21 21 C 1.38459 * 119.97517 * 0.56672 * 20 19 18 22 22 F 1.35095 * 120.02618 * 179.68138 * 21 20 19 23 23 C 1.38462 * 119.94670 * 359.70651 * 21 20 19 24 24 C 1.38198 * 119.97328 * 359.97438 * 23 21 20 25 25 C 1.38637 * 120.50227 * 0.25572 * 12 11 10 26 26 C 1.37619 * 120.24722 * 359.44635 * 25 12 11 27 27 H 0.97002 * 119.99935 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12362 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.87366 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46498 * 330.00475 * 13 12 11 31 31 H 1.08999 * 109.47215 * 210.00355 * 13 12 11 32 32 H 0.96991 * 120.00176 * 345.00543 * 14 13 12 33 33 H 1.08003 * 119.98717 * 359.97438 * 19 18 15 34 34 H 1.08004 * 120.01036 * 180.24831 * 20 19 18 35 35 H 1.07998 * 120.01082 * 179.97438 * 23 21 20 36 36 H 1.08001 * 119.98729 * 179.97438 * 24 23 21 37 37 H 1.07999 * 119.87722 * 179.70152 * 25 12 11 38 38 H 1.08006 * 120.12611 * 180.27406 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3521 -2.4072 -0.3743 10 6 1.8259 -3.6498 0.0856 11 6 1.1799 -4.8068 -0.2861 12 6 0.0669 -4.7512 -1.1106 13 6 -0.6316 -6.0251 -1.5111 14 7 -1.6747 -6.3388 -0.5314 15 16 -2.8414 -7.4568 -0.8936 16 8 -3.3368 -7.1170 -2.1814 17 8 -3.6703 -7.5587 0.2561 18 6 -2.0357 -9.0144 -1.0656 19 6 -1.5651 -9.4158 -2.3020 20 6 -0.9280 -10.6348 -2.4369 21 6 -0.7715 -11.4592 -1.3356 22 9 -0.1546 -12.6538 -1.4677 23 6 -1.2483 -11.0586 -0.0989 24 6 -1.8792 -9.8363 0.0349 25 6 -0.4052 -3.5329 -1.5743 26 6 0.2213 -2.3628 -1.2106 27 1 -0.4850 0.8401 0.0004 28 1 2.6936 -3.6954 0.7270 29 1 1.5415 -5.7616 0.0660 30 1 0.0913 -6.8402 -1.5457 31 1 -1.0833 -5.8980 -2.4948 32 1 -1.6820 -5.8916 0.3293 33 1 -1.6919 -8.7748 -3.1619 34 1 -0.5569 -10.9464 -3.4021 35 1 -1.1272 -11.7010 0.7607 36 1 -2.2515 -9.5238 0.9993 37 1 -1.2703 -3.5017 -2.2201 38 1 -0.1508 -1.4145 -1.5694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475432981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:55 Heat of formation + Delta-G solvation = -98.747084 kcal Electronic energy + Delta-G solvation = -25065.571201 eV Core-core repulsion = 21106.002192 eV Total energy + Delta-G solvation = -3959.569009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.15634 -39.99798 -39.57209 -38.33303 -36.95198 -36.54916 -35.02877 -32.32075 -31.88354 -31.74955 -31.09664 -28.20193 -25.18914 -24.26419 -24.25052 -22.85168 -21.83586 -20.56934 -19.24570 -19.20268 -18.70306 -18.24962 -17.72370 -17.22002 -16.95816 -16.79334 -16.02896 -15.75188 -15.64075 -15.57987 -15.18578 -14.69936 -14.49778 -14.43171 -14.25908 -14.01553 -13.79728 -13.70494 -13.64688 -13.23412 -13.17180 -13.10842 -12.80126 -12.71049 -12.33841 -12.24288 -12.09787 -12.03186 -11.45010 -11.23035 -11.01456 -10.39688 -10.28482 -10.24891 -9.34474 -9.23338 -8.64406 -6.33753 -0.70293 -0.40781 0.08004 0.93269 1.18850 1.38749 1.48945 1.52361 1.99989 2.20500 2.32124 2.73025 2.79577 3.00799 3.26436 3.62862 3.76913 3.78683 4.08550 4.10914 4.21731 4.38748 4.54706 4.57360 4.67699 4.73591 4.77290 4.86931 4.94527 4.97330 5.08737 5.12573 5.16808 5.41088 5.47486 5.65474 5.72997 5.96358 6.11317 6.12950 6.25772 6.40871 6.72520 6.95032 7.05221 8.31740 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.002497 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.243061 B =11212.059985 C =11872.455049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.083 3.917 10 C -0.245 4.245 11 C -0.069 4.069 12 C -0.217 4.217 13 C 0.182 3.818 14 N -1.106 6.106 15 S 2.713 3.287 16 O -0.984 6.984 17 O -0.988 6.988 18 C -0.690 4.690 19 C 0.002 3.998 20 C -0.173 4.173 21 C 0.144 3.856 22 F -0.134 7.134 23 C -0.175 4.175 24 C 0.003 3.997 25 C -0.088 4.088 26 C -0.195 4.195 27 H 0.288 0.712 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.422 0.578 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.104 0.896 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 -18.616 -2.484 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.264 4.264 11 C -0.087 4.087 12 C -0.220 4.220 13 C 0.058 3.942 14 N -0.868 5.868 15 S 2.805 3.195 16 O -0.974 6.974 17 O -0.978 6.978 18 C -0.779 4.779 19 C -0.018 4.018 20 C -0.193 4.193 21 C 0.124 3.876 22 F -0.113 7.113 23 C -0.194 4.194 24 C -0.016 4.016 25 C -0.107 4.107 26 C -0.215 4.215 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.258 0.742 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.185 0.815 36 H 0.179 0.821 37 H 0.122 0.878 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.899 -18.461 -2.760 18.890 hybrid contribution 0.950 0.544 0.493 1.200 sum -1.950 -17.917 -2.267 18.164 Atomic orbital electron populations 1.69871 1.08991 1.30633 1.35292 1.26751 0.95462 1.04528 0.91279 0.85285 0.78812 0.75772 0.80059 1.18517 1.19357 1.18347 1.19862 0.98409 0.92641 1.41936 0.90611 1.18004 0.91745 0.93222 0.88971 1.21181 1.04563 0.93151 1.07538 1.20749 0.94723 0.97090 0.96181 1.19249 1.00860 0.93503 1.08430 1.19997 0.88626 0.94959 0.90659 1.55554 1.46565 1.56673 1.27979 1.01061 0.72716 0.73239 0.72508 1.93546 1.78155 1.83218 1.42529 1.93544 1.65571 1.87231 1.51449 1.30854 1.21793 1.23974 1.01281 1.21084 0.89421 0.95304 0.95957 1.21539 1.03005 0.94933 0.99808 1.18201 0.92810 0.81221 0.95371 1.91542 1.79876 1.43170 1.96663 1.21530 1.01733 0.98645 0.97524 1.21034 0.90743 0.91677 0.98141 1.20849 0.98192 0.92696 0.98991 1.21278 1.00519 0.97137 1.02555 0.90138 0.88523 0.85703 0.89561 0.90212 0.74232 0.81917 0.81447 0.81525 0.82064 0.87789 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.54 10.95 21.83 0.24 -42.30 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 37.60 29.60 68.60 2.03 39.63 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.50 -26.32 9.05 23.46 0.21 -26.11 16 8 H 0.08 3.84 7.91 -2.91 -0.02 3.82 16 9 C 0.08 4.33 5.57 -21.29 -0.12 4.21 16 10 C -0.24 -11.20 9.80 22.73 0.22 -10.98 16 11 C -0.07 -2.63 9.67 22.22 0.21 -2.41 16 12 C -0.22 -8.03 5.30 -19.67 -0.10 -8.13 16 13 C 0.18 4.94 6.34 85.63 0.54 5.49 16 14 N -1.11 -28.24 5.99 -190.78 -1.14 -29.38 16 15 S 2.71 67.04 5.74 -56.49 -0.32 66.71 16 16 O -0.98 -29.39 16.74 -128.00 -2.14 -31.53 16 17 O -0.99 -29.04 17.28 -128.00 -2.21 -31.25 16 18 C -0.69 -13.54 5.95 22.27 0.13 -13.41 16 19 C 0.00 0.03 9.52 22.26 0.21 0.24 16 20 C -0.17 -2.61 10.03 22.31 0.22 -2.38 16 21 C 0.14 2.33 7.30 22.38 0.16 2.50 16 22 F -0.13 -2.27 17.27 44.97 0.78 -1.49 16 23 C -0.17 -2.64 10.03 22.31 0.22 -2.41 16 24 C 0.00 0.06 9.52 22.26 0.21 0.27 16 25 C -0.09 -3.82 9.67 22.22 0.21 -3.60 16 26 C -0.20 -9.93 8.70 22.73 0.20 -9.74 16 27 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 28 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 29 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 30 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 31 H 0.08 2.08 7.69 -2.39 -0.02 2.06 16 32 H 0.42 10.93 8.64 -96.75 -0.84 10.09 16 33 H 0.16 2.38 7.61 -2.91 -0.02 2.36 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.16 2.36 7.61 -2.91 -0.02 2.34 16 37 H 0.10 4.13 8.06 -2.91 -0.02 4.10 16 38 H 0.10 5.26 6.16 -2.91 -0.02 5.24 16 Total: -1.00 -65.57 348.75 0.49 -65.08 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.28 Total: 28.84 kcal Atomic # 6 Polarization: -67.29 SS G_CDS: 2.99 Total: -64.30 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -0.90 Total: -71.68 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -4.35 Total: -62.78 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 16 Polarization: 67.04 SS G_CDS: -0.32 Total: 66.71 kcal Total: -65.57 0.49 -65.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475432981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.665 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds