Wall clock time and date at job start Tue Mar 31 2020 19:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00198 * 2 1 4 4 H 1.48506 * 109.47440 * 270.00267 * 3 2 1 5 5 H 1.48501 * 109.47072 * 30.00144 * 3 2 1 6 6 H 1.48500 * 109.47294 * 150.00099 * 3 2 1 7 7 C 1.38817 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99639 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99631 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99628 * 180.27666 * 9 7 2 11 11 C 1.50702 * 109.46941 * 179.72879 * 10 9 7 12 12 N 1.28675 * 124.92822 * 89.69771 * 11 10 9 13 13 C 1.32444 * 117.82615 * 179.83924 * 12 11 10 14 14 C 1.34626 * 113.29388 * 0.34911 * 13 12 11 15 15 S 1.70897 * 124.92341 * 269.99597 * 11 10 9 16 16 C 1.50991 * 125.54658 * 180.02562 * 14 13 12 17 17 C 1.53300 * 108.96371 * 342.31953 * 16 14 13 18 18 N 1.47072 * 108.58946 * 45.04407 * 17 16 14 19 19 C 1.34778 * 120.80173 * 115.21053 * 18 17 16 20 20 O 1.21503 * 119.99960 * 354.05231 * 19 18 17 21 21 C 1.48282 * 119.99685 * 174.04693 * 19 18 17 22 22 C 1.47487 * 128.70638 * 173.63214 * 21 19 18 23 23 N 1.30648 * 102.71438 * 179.91149 * 22 21 19 24 24 O 1.20841 * 109.61954 * 0.36481 * 23 22 21 25 25 N 1.20903 * 115.90438 * 359.73855 * 24 23 22 26 26 C 1.47035 * 118.39239 * 295.22907 * 18 17 16 27 27 H 0.97003 * 120.00463 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00589 * 0.02562 * 9 7 2 29 29 H 1.09008 * 109.47050 * 299.72518 * 10 9 7 30 30 H 1.08997 * 109.47165 * 59.72559 * 10 9 7 31 31 H 1.08993 * 109.55921 * 102.16882 * 16 14 13 32 32 H 1.09007 * 109.55152 * 222.37629 * 16 14 13 33 33 H 1.08997 * 109.61643 * 164.77851 * 17 16 14 34 34 H 1.08998 * 109.61513 * 285.13673 * 17 16 14 35 35 H 1.08000 * 128.64645 * 0.03758 * 22 21 19 36 36 H 1.09000 * 109.81249 * 164.76213 * 26 18 17 37 37 H 1.09007 * 109.81138 * 285.65734 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 0.0050 11 6 1.0786 -4.8021 0.0105 12 7 0.5953 -5.3633 -1.0417 13 6 -0.2556 -6.3641 -0.8732 14 6 -0.4975 -6.6450 0.4211 15 16 0.4433 -5.5394 1.4153 16 6 -1.4190 -7.7290 0.9267 17 6 -2.3561 -8.1559 -0.2090 18 7 -1.5620 -8.3182 -1.4362 19 6 -1.4304 -9.5267 -2.0183 20 8 -1.8792 -10.5156 -1.4734 21 6 -0.7380 -9.6492 -3.3238 22 6 -0.3757 -10.8721 -4.0644 23 7 0.2049 -10.3987 -5.1348 24 8 0.2191 -9.1913 -5.0883 25 7 -0.2877 -8.6944 -4.1094 26 6 -0.9147 -7.1304 -2.0123 27 1 -0.4851 0.8400 -0.0004 28 1 0.3555 -2.3881 -0.0005 29 1 2.6843 -3.7185 -0.8850 30 1 2.6849 -3.7104 0.8950 31 1 -0.8298 -8.5851 1.2549 32 1 -2.0061 -7.3481 1.7625 33 1 -2.8329 -9.1023 0.0463 34 1 -3.1181 -7.3916 -0.3615 35 1 -0.5492 -11.9025 -3.7911 36 1 -0.1604 -7.4358 -2.7375 37 1 -1.6613 -6.5015 -2.4974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479741348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:53 Heat of formation + Delta-G solvation = 140.610420 kcal Electronic energy + Delta-G solvation = -25455.708551 eV Core-core repulsion = 21558.731575 eV Total energy + Delta-G solvation = -3896.976976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.01786 -41.80419 -40.53439 -37.82473 -36.54193 -35.97370 -35.62703 -33.78440 -33.22429 -31.26264 -28.51490 -28.17191 -26.49803 -25.44160 -25.09682 -24.22233 -23.28571 -21.47572 -20.15234 -19.89543 -19.55989 -19.23404 -18.89586 -18.24844 -17.49236 -16.86516 -16.81347 -16.18392 -16.01377 -15.81176 -15.39784 -15.22559 -14.99074 -14.95354 -14.19882 -14.15837 -14.05991 -13.84976 -13.64034 -13.12989 -13.00074 -12.93526 -12.77805 -12.56273 -12.32524 -12.13630 -12.11646 -11.91082 -11.88284 -11.73840 -11.04664 -10.64234 -10.29633 -10.10140 -9.68283 -9.11217 -7.97885 -5.30184 -0.47581 -0.39798 0.26771 0.30068 0.69824 1.19762 1.48544 1.51065 1.58323 1.60629 1.63437 2.15144 2.38823 2.55034 2.65779 2.93294 3.31559 3.36899 3.59764 3.69733 3.76289 3.83306 4.05139 4.13789 4.17108 4.26443 4.40906 4.44137 4.55670 4.64289 4.73643 4.79320 4.82556 5.04048 5.11021 5.46765 5.81315 6.20247 6.50620 6.71133 7.28171 7.29811 7.93598 8.21143 9.25440 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.002757 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.854899 B =10154.691915 C =11225.415732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.735 5.735 10 C 0.227 3.773 11 C 0.035 3.965 12 N -0.484 5.484 13 C 0.023 3.977 14 C -0.224 4.224 15 S 0.176 5.824 16 C -0.052 4.052 17 C 0.115 3.885 18 N -0.592 5.592 19 C 0.617 3.383 20 O -0.525 6.525 21 C -0.058 4.058 22 C 0.060 3.940 23 N -0.361 5.361 24 O 0.336 5.664 25 N -0.325 5.325 26 C 0.188 3.812 27 H 0.253 0.747 28 H 0.373 0.627 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.262 0.738 36 H 0.119 0.881 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -24.757 -1.599 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.381 4.381 8 H 0.102 0.898 9 N -0.379 5.379 10 C 0.098 3.902 11 C -0.243 4.243 12 N -0.199 5.199 13 C -0.110 4.110 14 C -0.346 4.346 15 S 0.434 5.566 16 C -0.092 4.092 17 C -0.007 4.007 18 N -0.325 5.325 19 C 0.402 3.598 20 O -0.400 6.400 21 C -0.222 4.222 22 C -0.126 4.126 23 N -0.087 5.087 24 O 0.112 5.888 25 N -0.045 5.045 26 C 0.062 3.938 27 H 0.061 0.939 28 H 0.205 0.795 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.278 0.722 36 H 0.136 0.864 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.635 -24.068 -1.524 24.388 hybrid contribution -0.527 0.519 -0.264 0.785 sum -4.161 -23.549 -1.788 23.981 Atomic orbital electron populations 1.69834 1.06813 1.26316 1.58892 1.25638 0.96417 1.01289 1.03043 0.85062 0.77802 0.78939 0.77436 1.21485 1.22100 1.18934 1.19645 0.91800 0.84512 1.42116 0.89770 1.42412 1.05502 1.00235 1.89795 1.19300 0.90292 0.80350 1.00300 1.26874 1.03477 1.02355 0.91605 1.65692 1.11429 1.09353 1.33425 1.21101 0.98885 0.96374 0.94602 1.26414 1.07364 1.05094 0.95695 1.83692 1.37143 1.24906 1.10855 1.20694 0.95477 0.94091 0.98952 1.22007 0.92616 1.05052 0.81046 1.47928 1.49899 1.06852 1.27784 1.16457 0.78674 0.83042 0.81607 1.90829 1.49538 1.36136 1.63530 1.26236 1.05939 0.90279 0.99753 1.28268 0.94338 1.02920 0.87025 1.75115 1.18330 0.93022 1.22201 1.85143 1.54979 1.15613 1.33041 1.75438 1.08195 1.23886 0.96987 1.20611 0.97237 0.84807 0.91103 0.93852 0.79490 0.93554 0.92392 0.88447 0.86195 0.85902 0.88343 0.72241 0.86386 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.98 45.70 29.55 68.60 2.03 47.72 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.25 -13.86 9.99 84.04 0.84 -13.02 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.74 -38.10 5.59 -347.17 -1.94 -40.04 16 10 C 0.23 9.43 6.84 85.63 0.59 10.02 16 11 C 0.03 1.29 6.75 88.57 0.60 1.88 16 12 N -0.48 -17.85 10.51 -176.97 -1.86 -19.71 16 13 C 0.02 0.69 6.87 42.15 0.29 0.98 16 14 C -0.22 -5.64 6.43 24.95 0.16 -5.48 16 15 S 0.18 5.05 23.17 -56.49 -1.31 3.74 16 16 C -0.05 -0.83 6.44 30.04 0.19 -0.64 16 17 C 0.12 1.73 6.40 86.37 0.55 2.28 16 18 N -0.59 -11.59 2.92 -822.68 -2.40 -13.99 16 19 C 0.62 12.21 7.72 86.92 0.67 12.88 16 20 O -0.53 -11.54 16.50 -3.73 -0.06 -11.61 16 21 C -0.06 -1.04 7.16 44.29 0.32 -0.73 16 22 C 0.06 0.79 12.63 87.31 1.10 1.89 16 23 N -0.36 -6.01 12.22 -61.41 -0.75 -6.76 16 24 O 0.34 6.35 11.65 140.85 1.64 7.99 16 25 N -0.32 -6.56 9.10 -52.06 -0.47 -7.03 16 26 C 0.19 4.48 6.33 86.04 0.54 5.02 16 27 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.37 20.97 7.66 -92.71 -0.71 20.26 16 29 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.12 1.55 7.04 -2.39 -0.02 1.53 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.26 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.12 2.93 4.73 -2.39 -0.01 2.92 16 37 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -70.66 337.12 1.93 -68.74 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.45 Total: 18.57 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 6.32 Total: 11.50 kcal Atomic # 7 Polarization: -139.50 SS G_CDS: -7.14 Total: -146.65 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 1.58 Total: -3.62 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.31 Total: 3.74 kcal Total: -70.66 1.93 -68.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479741348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.350 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds