Wall clock time and date at job start Tue Mar 31 2020 18:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47167 * 89.99279 * 3 2 1 5 5 H 1.48495 * 109.47244 * 209.99500 * 3 2 1 6 6 H 1.48505 * 109.46867 * 329.99547 * 3 2 1 7 7 C 1.37883 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99780 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47223 * 300.00517 * 9 7 2 11 11 N 1.46500 * 109.47303 * 179.97438 * 9 7 2 12 12 C 1.34778 * 120.00020 * 155.00272 * 11 9 7 13 13 O 1.21358 * 119.99793 * 0.02562 * 12 11 9 14 14 C 1.49341 * 119.99903 * 180.02562 * 12 11 9 15 15 O 1.21388 * 119.99779 * 0.02562 * 14 12 11 16 16 N 1.34771 * 120.00155 * 179.97438 * 14 12 11 17 17 C 1.39844 * 120.00348 * 175.32129 * 16 14 12 18 18 C 1.39386 * 120.45844 * 34.97153 * 17 16 14 19 19 C 1.38403 * 118.38663 * 179.97438 * 18 17 16 20 20 C 1.38593 * 119.21693 * 359.97438 * 19 18 17 21 21 F 1.35095 * 119.56765 * 179.97438 * 20 19 18 22 22 N 1.32018 * 120.86274 * 359.97438 * 20 19 18 23 23 C 1.31885 * 121.76654 * 359.77381 * 22 20 19 24 24 C 1.53011 * 109.47045 * 60.00222 * 9 7 2 25 25 F 1.39891 * 109.46977 * 59.99516 * 24 9 7 26 26 F 1.39894 * 109.47160 * 180.02562 * 24 9 7 27 27 F 1.39907 * 109.46753 * 299.99798 * 24 9 7 28 28 H 0.96996 * 119.99663 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99398 * 335.00642 * 11 9 7 30 30 H 0.97001 * 119.99730 * 355.32647 * 16 14 12 31 31 H 1.07996 * 120.81100 * 359.95625 * 18 17 16 32 32 H 1.08001 * 120.39100 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.65235 * 180.24199 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4400 -0.6999 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 2.2030 -3.6127 0.0005 12 6 1.8368 -4.8124 0.4938 13 8 0.7183 -4.9702 0.9375 14 6 2.8074 -5.9474 0.4943 15 8 3.9262 -5.7893 0.0509 16 7 2.4414 -7.1468 0.9879 17 6 3.3149 -8.2353 0.8998 18 6 4.6914 -8.0477 1.0131 19 6 5.5163 -9.1551 0.9198 20 6 4.9513 -10.4046 0.7190 21 9 5.7499 -11.4903 0.6264 22 7 3.6428 -10.5477 0.6170 23 6 2.8229 -9.5185 0.7052 24 6 0.3719 -2.5805 -1.2492 25 9 1.1766 -2.5066 -2.3910 26 9 -0.3281 -3.7917 -1.2489 27 9 -0.5373 -1.5171 -1.2497 28 1 -0.4849 0.8400 -0.0004 29 1 3.0968 -3.4866 -0.3544 30 1 1.5720 -7.2551 1.4044 31 1 5.1043 -7.0621 1.1695 32 1 6.5877 -9.0468 1.0026 33 1 1.7576 -9.6753 0.6207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001517021722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:42 Heat of formation + Delta-G solvation = -198.702651 kcal Electronic energy + Delta-G solvation = -28626.964456 eV Core-core repulsion = 23574.911094 eV Total energy + Delta-G solvation = -5052.053362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.068 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.23767 -48.52589 -46.18278 -45.77756 -41.30376 -39.90384 -38.34648 -35.75592 -34.80295 -32.75651 -32.73617 -30.18290 -28.88602 -25.36384 -24.69015 -24.46990 -23.06732 -21.41216 -20.27376 -19.26359 -18.35237 -17.82806 -17.45357 -17.14525 -16.86450 -16.82162 -16.40866 -16.17333 -15.87360 -15.53279 -15.03190 -14.88580 -14.51541 -14.24734 -13.95084 -13.46454 -13.45588 -13.23897 -13.14044 -13.08882 -12.71192 -12.57103 -12.43724 -12.15502 -11.98190 -11.62451 -11.34425 -11.20966 -11.00629 -10.94888 -10.52380 -10.27718 -10.08059 -9.86815 -9.43224 -8.89548 -8.66827 -8.60752 -6.38240 -4.63344 0.41177 0.75060 1.48739 2.21878 3.11134 3.14675 3.18898 3.21831 3.28046 3.36093 3.63081 4.09498 4.18752 4.34918 4.41422 4.47870 4.62855 4.78823 4.88298 5.13734 5.54803 5.59717 5.62029 5.67422 5.81157 5.99288 6.28373 6.59007 6.64255 6.81772 7.21758 7.23400 7.47517 7.48798 7.90703 8.20799 8.42384 9.05272 10.53453 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.002782 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.697643 B =10062.157590 C =10682.661041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.067 3.933 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.281 1.281 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.243 3.757 10 H 0.092 0.908 11 N -0.672 5.672 12 C 0.502 3.498 13 O -0.511 6.511 14 C 0.515 3.485 15 O -0.499 6.499 16 N -0.643 5.643 17 C 0.089 3.911 18 C -0.051 4.051 19 C -0.171 4.171 20 C 0.287 3.713 21 F -0.113 7.113 22 N -0.494 5.494 23 C 0.120 3.880 24 C 0.417 3.583 25 F -0.206 7.206 26 F -0.218 7.218 27 F -0.133 7.133 28 H 0.271 0.729 29 H 0.413 0.587 30 H 0.429 0.571 31 H 0.164 0.836 32 H 0.153 0.847 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 -12.687 2.775 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.143 4.143 3 Si 0.745 3.255 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.100 0.900 9 C 0.138 3.862 10 H 0.109 0.891 11 N -0.323 5.323 12 C 0.280 3.720 13 O -0.387 6.387 14 C 0.297 3.703 15 O -0.372 6.372 16 N -0.291 5.291 17 C -0.009 4.009 18 C -0.079 4.079 19 C -0.192 4.192 20 C 0.133 3.867 21 F -0.093 7.093 22 N -0.208 5.208 23 C -0.040 4.040 24 C 0.361 3.639 25 F -0.188 7.188 26 F -0.200 7.200 27 F -0.114 7.114 28 H 0.081 0.919 29 H 0.249 0.751 30 H 0.268 0.732 31 H 0.181 0.819 32 H 0.171 0.829 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.826 -13.330 2.588 14.776 hybrid contribution 0.665 1.345 -0.245 1.521 sum 6.491 -11.985 2.343 13.830 Atomic orbital electron populations 1.70376 1.05905 1.27728 1.43074 1.25080 0.95203 1.00245 0.93765 0.86149 0.79646 0.81256 0.78494 1.20064 1.19352 1.20684 1.20868 0.94014 0.87701 1.56690 0.90050 1.19976 0.88536 0.85303 0.92356 0.89063 1.45953 1.18258 1.09249 1.58855 1.19629 0.87345 0.84034 0.80958 1.90796 1.20096 1.82492 1.45331 1.20773 0.88217 0.83870 0.77403 1.90747 1.20520 1.82468 1.43508 1.43069 1.20463 1.07489 1.58124 1.18812 0.91018 0.88515 1.02530 1.21742 0.91400 1.00519 0.94190 1.21803 1.02603 0.90730 1.04090 1.18149 0.86126 0.82803 0.99617 1.91622 1.70713 1.53725 1.93201 1.66991 1.03297 1.35110 1.15412 1.22391 0.99822 0.85530 0.96277 1.23080 0.80850 0.72955 0.87048 1.93011 1.74274 1.96155 1.55330 1.93068 1.81484 1.48478 1.96977 1.93425 1.68214 1.53595 1.96174 0.91869 0.75108 0.73197 0.81900 0.82910 0.80934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.73 9.50 55.43 0.53 -21.21 16 2 C 0.07 1.64 5.20 -17.82 -0.09 1.55 16 3 Si 0.92 19.21 29.54 -169.99 -5.02 14.19 16 4 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.56 -13.39 8.46 -34.44 -0.29 -13.68 16 8 H 0.08 1.86 7.74 -52.49 -0.41 1.46 16 9 C 0.24 5.59 2.21 -69.08 -0.15 5.44 16 10 H 0.09 2.29 7.58 -51.93 -0.39 1.89 16 11 N -0.67 -12.87 4.98 -55.39 -0.28 -13.14 16 12 C 0.50 8.77 7.42 -11.64 -0.09 8.68 16 13 O -0.51 -9.88 15.05 5.49 0.08 -9.80 16 14 C 0.51 7.32 7.74 -11.64 -0.09 7.23 16 15 O -0.50 -7.59 13.95 5.46 0.08 -7.51 16 16 N -0.64 -7.07 5.34 -10.19 -0.05 -7.13 16 17 C 0.09 0.92 6.32 -83.57 -0.53 0.39 16 18 C -0.05 -0.53 8.81 -39.09 -0.34 -0.87 16 19 C -0.17 -1.58 10.08 -39.39 -0.40 -1.97 16 20 C 0.29 3.12 8.41 -17.34 -0.15 2.98 16 21 F -0.11 -1.25 17.29 2.25 0.04 -1.22 16 22 N -0.49 -5.66 10.37 -13.43 -0.14 -5.80 16 23 C 0.12 1.15 11.12 -17.32 -0.19 0.96 16 24 C 0.42 10.03 2.81 37.16 0.10 10.13 16 25 F -0.21 -4.85 16.94 2.25 0.04 -4.82 16 26 F -0.22 -5.09 15.67 2.25 0.04 -5.06 16 27 F -0.13 -3.47 12.91 2.25 0.03 -3.44 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.41 7.28 8.01 -40.82 -0.33 6.95 16 30 H 0.43 3.95 8.30 -40.82 -0.34 3.61 16 31 H 0.16 1.73 6.31 -52.49 -0.33 1.40 16 32 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -28.40 313.79 -3.93 -32.32 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -1.78 Total: 7.05 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: -2.22 Total: 20.84 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.06 Total: -47.28 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.16 Total: -17.31 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 0.14 Total: -14.53 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.40 -3.93 -32.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001517021722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.378 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds