Wall clock time and date at job start Tue Mar 31 2020 18:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47167 * 89.99279 * 3 2 1 5 5 H 1.48495 * 109.47244 * 209.99500 * 3 2 1 6 6 H 1.48505 * 109.46867 * 329.99547 * 3 2 1 7 7 C 1.37883 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99912 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99780 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47223 * 300.00517 * 9 7 2 11 11 N 1.46500 * 109.47303 * 179.97438 * 9 7 2 12 12 C 1.34778 * 120.00020 * 155.00272 * 11 9 7 13 13 O 1.21358 * 119.99793 * 0.02562 * 12 11 9 14 14 C 1.49341 * 119.99903 * 180.02562 * 12 11 9 15 15 O 1.21388 * 119.99779 * 0.02562 * 14 12 11 16 16 N 1.34771 * 120.00155 * 179.97438 * 14 12 11 17 17 C 1.39844 * 120.00348 * 175.32129 * 16 14 12 18 18 C 1.39386 * 120.45844 * 34.97153 * 17 16 14 19 19 C 1.38403 * 118.38663 * 179.97438 * 18 17 16 20 20 C 1.38593 * 119.21693 * 359.97438 * 19 18 17 21 21 F 1.35095 * 119.56765 * 179.97438 * 20 19 18 22 22 N 1.32018 * 120.86274 * 359.97438 * 20 19 18 23 23 C 1.31885 * 121.76654 * 359.77381 * 22 20 19 24 24 C 1.53011 * 109.47045 * 60.00222 * 9 7 2 25 25 F 1.39891 * 109.46977 * 59.99516 * 24 9 7 26 26 F 1.39894 * 109.47160 * 180.02562 * 24 9 7 27 27 F 1.39907 * 109.46753 * 299.99798 * 24 9 7 28 28 H 0.96996 * 119.99663 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99398 * 335.00642 * 11 9 7 30 30 H 0.97001 * 119.99730 * 355.32647 * 16 14 12 31 31 H 1.07996 * 120.81100 * 359.95625 * 18 17 16 32 32 H 1.08001 * 120.39100 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.65235 * 180.24199 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4400 -0.6999 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 2.2030 -3.6127 0.0005 12 6 1.8368 -4.8124 0.4938 13 8 0.7183 -4.9702 0.9375 14 6 2.8074 -5.9474 0.4943 15 8 3.9262 -5.7893 0.0509 16 7 2.4414 -7.1468 0.9879 17 6 3.3149 -8.2353 0.8998 18 6 4.6914 -8.0477 1.0131 19 6 5.5163 -9.1551 0.9198 20 6 4.9513 -10.4046 0.7190 21 9 5.7499 -11.4903 0.6264 22 7 3.6428 -10.5477 0.6170 23 6 2.8229 -9.5185 0.7052 24 6 0.3719 -2.5805 -1.2492 25 9 1.1766 -2.5066 -2.3910 26 9 -0.3281 -3.7917 -1.2489 27 9 -0.5373 -1.5171 -1.2497 28 1 -0.4849 0.8400 -0.0004 29 1 3.0968 -3.4866 -0.3544 30 1 1.5720 -7.2551 1.4044 31 1 5.1043 -7.0621 1.1695 32 1 6.5877 -9.0468 1.0026 33 1 1.7576 -9.6753 0.6207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001517021722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:41 Heat of formation + Delta-G solvation = -218.603347 kcal Electronic energy + Delta-G solvation = -28627.827415 eV Core-core repulsion = 23574.911094 eV Total energy + Delta-G solvation = -5052.916321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.068 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.45460 -50.06913 -48.09211 -47.75412 -42.34576 -40.99501 -39.62257 -37.04285 -36.19256 -34.50147 -33.54576 -31.14147 -30.54360 -26.79596 -26.35863 -25.27245 -24.21333 -22.95510 -21.62260 -20.53859 -19.20341 -19.06711 -19.00654 -18.71696 -18.62018 -18.20632 -17.67619 -17.43683 -17.12155 -16.81527 -16.72738 -15.97665 -15.62987 -15.22875 -15.07053 -15.03487 -14.97308 -14.59024 -14.48964 -14.32117 -14.30469 -14.24789 -14.06099 -13.94992 -13.90806 -13.12284 -12.95869 -12.74136 -12.63067 -12.22787 -12.14603 -11.65148 -11.15354 -11.00514 -10.71190 -10.59659 -10.30612 -9.51713 -8.24765 -6.55440 -0.46442 -0.02852 0.29818 1.03833 1.47732 1.49710 1.60505 1.93504 2.29909 2.39210 2.46039 2.48902 2.56403 2.91364 3.19608 3.48035 3.63323 3.72745 3.73629 3.78829 4.04972 4.11672 4.45702 4.76000 4.78020 4.81169 4.93128 5.10283 5.40584 5.47833 5.60770 5.74436 6.27605 6.43550 6.46945 6.57395 6.84964 7.17212 8.67694 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.002782 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.697643 B =10062.157590 C =10682.661041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.021 3.979 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.261 1.261 6 H -0.284 1.284 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.251 3.749 10 H 0.066 0.934 11 N -0.674 5.674 12 C 0.502 3.498 13 O -0.531 6.531 14 C 0.526 3.474 15 O -0.509 6.509 16 N -0.624 5.624 17 C 0.077 3.923 18 C -0.056 4.056 19 C -0.160 4.160 20 C 0.276 3.724 21 F -0.117 7.117 22 N -0.516 5.516 23 C 0.129 3.871 24 C 0.413 3.587 25 F -0.203 7.203 26 F -0.216 7.216 27 F -0.147 7.147 28 H 0.271 0.729 29 H 0.420 0.580 30 H 0.438 0.562 31 H 0.162 0.838 32 H 0.179 0.821 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -13.223 2.920 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.194 1.194 5 H -0.186 1.186 6 H -0.210 1.210 7 C -0.602 4.602 8 H 0.110 0.890 9 C 0.145 3.855 10 H 0.084 0.916 11 N -0.326 5.326 12 C 0.282 3.718 13 O -0.408 6.408 14 C 0.308 3.692 15 O -0.383 6.383 16 N -0.273 5.273 17 C -0.019 4.019 18 C -0.083 4.083 19 C -0.181 4.181 20 C 0.123 3.877 21 F -0.097 7.097 22 N -0.230 5.230 23 C -0.031 4.031 24 C 0.357 3.643 25 F -0.185 7.185 26 F -0.198 7.198 27 F -0.128 7.128 28 H 0.081 0.919 29 H 0.258 0.742 30 H 0.279 0.721 31 H 0.179 0.821 32 H 0.197 0.803 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.161 -13.923 2.746 15.896 hybrid contribution 0.239 1.390 -0.276 1.437 sum 7.400 -12.533 2.470 14.763 Atomic orbital electron populations 1.70487 1.07292 1.28384 1.44158 1.25909 0.95888 1.03436 0.93320 0.85192 0.78509 0.77236 0.78654 1.19387 1.18551 1.21000 1.21198 0.94628 0.88188 1.56212 0.89025 1.19580 0.88676 0.86562 0.90728 0.91612 1.45786 1.17974 1.09167 1.59676 1.20147 0.87672 0.84304 0.79712 1.90782 1.21283 1.82914 1.45814 1.19972 0.87245 0.83860 0.78132 1.90756 1.20462 1.82633 1.44447 1.42840 1.20915 1.06550 1.56970 1.18897 0.91035 0.88385 1.03614 1.21824 0.91553 1.00774 0.94148 1.21974 1.03818 0.89567 1.02737 1.18387 0.86186 0.83243 0.99904 1.91612 1.70793 1.53995 1.93252 1.67024 1.03853 1.35867 1.16251 1.22747 1.00841 0.84666 0.94799 1.23250 0.80828 0.72657 0.87572 1.93005 1.74129 1.96145 1.55246 1.93063 1.81500 1.48205 1.96998 1.93396 1.68774 1.54375 1.96279 0.91939 0.74212 0.72107 0.82083 0.80346 0.78320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.49 9.50 21.45 0.20 -45.29 16 2 C 0.02 1.01 5.20 84.66 0.44 1.45 16 3 Si 0.98 38.79 29.54 68.60 2.03 40.81 16 4 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.57 -27.03 8.46 25.60 0.22 -26.81 16 8 H 0.09 4.09 7.74 -2.91 -0.02 4.07 16 9 C 0.25 11.60 2.21 44.25 0.10 11.70 16 10 H 0.07 3.38 7.58 -2.39 -0.02 3.36 16 11 N -0.67 -25.53 4.98 -447.53 -2.23 -27.76 16 12 C 0.50 17.20 7.42 87.23 0.65 17.85 16 13 O -0.53 -20.38 15.05 -3.27 -0.05 -20.42 16 14 C 0.53 14.21 7.74 87.24 0.68 14.88 16 15 O -0.51 -14.64 13.95 -3.36 -0.05 -14.69 16 16 N -0.62 -12.58 5.34 -304.51 -1.62 -14.20 16 17 C 0.08 1.45 6.32 38.27 0.24 1.69 16 18 C -0.06 -1.03 8.81 22.59 0.20 -0.83 16 19 C -0.16 -2.60 10.08 22.39 0.23 -2.37 16 20 C 0.28 5.53 8.41 84.75 0.71 6.24 16 21 F -0.12 -2.43 17.29 44.97 0.78 -1.65 16 22 N -0.52 -10.89 10.37 -196.39 -2.04 -12.93 16 23 C 0.13 2.20 11.12 84.82 0.94 3.14 16 24 C 0.41 19.97 2.81 71.99 0.20 20.17 16 25 F -0.20 -9.52 16.94 44.97 0.76 -8.76 16 26 F -0.22 -10.08 15.67 44.97 0.70 -9.38 16 27 F -0.15 -7.79 12.91 44.97 0.58 -7.21 16 28 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.42 14.49 8.01 -92.71 -0.74 13.75 16 30 H 0.44 7.26 8.30 -92.71 -0.77 6.49 16 31 H 0.16 3.11 6.31 -2.91 -0.02 3.09 16 32 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.20 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -59.75 313.79 3.41 -56.35 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.27 Total: 18.03 kcal Atomic # 6 Polarization: 42.50 SS G_CDS: 4.60 Total: 47.10 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -5.68 Total: -100.18 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.10 Total: -35.11 kcal Atomic # 9 Polarization: -29.83 SS G_CDS: 2.82 Total: -27.00 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.81 kcal Total: -59.75 3.41 -56.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001517021722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.258 kcal (2) G-P(sol) polarization free energy of solvation -59.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds