Wall clock time and date at job start Tue Mar 31 2020 18:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00621 * 2 1 4 4 H 1.48498 * 109.47545 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46892 * 300.00076 * 3 2 1 6 6 H 1.48496 * 109.47356 * 59.99677 * 3 2 1 7 7 C 1.38953 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00484 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99933 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99944 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46835 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 14 13 18 18 C 1.34242 * 125.03318 * 274.69517 * 17 16 14 19 19 C 1.46483 * 107.00267 * 179.86043 * 18 17 16 20 20 C 1.39647 * 134.01598 * 180.11212 * 19 18 17 21 21 C 1.36719 * 119.75381 * 180.31874 * 20 19 18 22 22 Cl 1.73600 * 119.75024 * 179.97438 * 21 20 19 23 23 C 1.38934 * 120.50068 * 359.96897 * 21 20 19 24 24 C 1.37742 * 120.65461 * 0.02562 * 23 21 20 25 25 C 1.39123 * 119.79590 * 0.02562 * 24 23 21 26 26 N 1.36818 * 125.03625 * 94.99688 * 17 16 14 27 27 H 0.97000 * 125.06637 * 359.97438 * 26 17 16 28 28 H 0.97008 * 119.99447 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00359 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46980 * 60.00059 * 12 10 9 31 31 H 1.09002 * 109.47152 * 300.00160 * 12 10 9 32 32 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.07999 * 126.49905 * 359.96081 * 18 17 16 36 36 H 1.07992 * 120.12130 * 0.33452 * 20 19 18 37 37 H 1.07995 * 119.66977 * 180.02562 * 23 21 20 38 38 H 1.07999 * 120.10083 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8896 2.3964 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2099 -3.5580 -0.0021 12 6 1.2435 -4.8630 -0.0022 13 7 2.1954 -5.9765 -0.0027 14 6 1.7460 -7.2472 -0.0038 15 8 0.5536 -7.4688 -0.0039 16 6 2.7253 -8.3927 -0.0037 17 6 1.9716 -9.6978 -0.0044 18 6 1.5079 -10.3205 1.0907 19 6 0.8408 -11.5434 0.6379 20 6 0.1742 -12.5833 1.2895 21 6 -0.3482 -13.6158 0.5613 22 17 -1.1763 -14.9088 1.3714 23 6 -0.2216 -13.6380 -0.8221 24 6 0.4320 -12.6221 -1.4839 25 6 0.9721 -11.5623 -0.7624 26 7 1.6638 -10.4265 -1.1207 27 1 1.8978 -10.1798 -2.0292 28 1 -0.4850 0.8402 0.0004 29 1 0.3532 -2.3907 -0.0005 30 1 0.6165 -4.9201 -0.8920 31 1 0.6171 -4.9213 0.8880 32 1 3.1490 -5.7994 -0.0030 33 1 3.3526 -8.3345 -0.8932 34 1 3.3513 -8.3356 0.8868 35 1 1.6065 -9.9829 2.1119 36 1 0.0716 -12.5718 2.3644 37 1 -0.6398 -14.4600 -1.3840 38 1 0.5256 -12.6486 -2.5595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544135973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:40 Heat of formation + Delta-G solvation = -29.835228 kcal Electronic energy + Delta-G solvation = -24165.631920 eV Core-core repulsion = 20226.927409 eV Total energy + Delta-G solvation = -3938.704511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62833 -39.63480 -38.24247 -37.64613 -36.16281 -34.53658 -33.75521 -32.48485 -31.68686 -31.39716 -29.43938 -28.36200 -26.80093 -24.52132 -22.73828 -21.96997 -20.96505 -20.14020 -19.63092 -18.25268 -17.99379 -17.28758 -16.87259 -16.12755 -15.55756 -15.54454 -15.25039 -14.80129 -14.66596 -14.43111 -14.32765 -14.05037 -13.92878 -13.40223 -13.31237 -12.93948 -12.79251 -12.75548 -12.27507 -12.21361 -11.81888 -11.68658 -11.56665 -11.18768 -11.05514 -10.97874 -10.45536 -10.37905 -10.03301 -9.87677 -9.70559 -8.92243 -8.71097 -8.34343 -8.16358 -7.95751 -6.57157 -3.99457 0.76443 1.18568 1.98086 2.34731 2.64798 2.80903 3.06069 3.18658 3.24406 3.37077 3.53300 3.67049 4.06540 4.23754 4.41164 4.70152 4.79867 4.81829 4.90040 4.98195 5.07761 5.11266 5.13898 5.23334 5.41742 5.65428 5.72037 5.82240 5.87458 5.95483 5.99380 6.05582 6.35123 6.50697 6.54736 6.79053 7.23657 7.40789 7.66076 7.85958 8.29715 8.38835 8.98728 9.32861 9.80162 10.59631 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.034683 B = 0.001653 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.124330 B =16932.061393 C =17235.705666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.706 5.706 14 C 0.509 3.491 15 O -0.536 6.536 16 C -0.083 4.083 17 C 0.111 3.889 18 C -0.180 4.180 19 C -0.095 4.095 20 C -0.059 4.059 21 C -0.061 4.061 22 Cl -0.080 7.080 23 C -0.095 4.095 24 C -0.114 4.114 25 C 0.104 3.896 26 N -0.584 5.584 27 H 0.416 0.584 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.412 0.588 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 -24.951 -1.238 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.360 5.360 14 C 0.294 3.706 15 O -0.413 6.413 16 C -0.123 4.123 17 C 0.002 3.998 18 C -0.205 4.205 19 C -0.100 4.100 20 C -0.078 4.078 21 C -0.089 4.089 22 Cl -0.051 7.051 23 C -0.115 4.115 24 C -0.135 4.135 25 C -0.004 4.004 26 N -0.186 5.186 27 H 0.253 0.747 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.250 0.750 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.464 -24.941 -1.271 25.017 hybrid contribution 0.150 1.076 -0.410 1.161 sum 1.614 -23.865 -1.681 23.979 Atomic orbital electron populations 1.69624 1.06041 1.28509 1.49153 1.25344 0.95678 1.00005 0.96698 0.85746 0.79666 0.80739 0.77869 1.19113 1.20595 1.20565 1.19787 0.93503 0.81962 1.48304 0.87570 1.41814 1.09514 1.04516 1.62404 1.19724 0.88287 0.84980 0.85787 1.90493 1.13679 1.86812 1.57531 1.20961 0.91842 0.85740 1.03297 1.45678 1.11698 1.04512 1.74147 1.20285 0.89545 0.83609 0.77160 1.90757 1.16510 1.84667 1.49336 1.20318 0.97262 0.88169 1.06598 1.19524 1.00899 0.93336 0.85996 1.21386 1.05532 0.95367 0.98201 1.18991 1.02596 0.96403 0.92023 1.20102 0.96290 0.91372 1.00020 1.20210 1.03431 0.92547 0.92692 1.98353 1.77652 1.49444 1.79695 1.20610 0.99878 0.98897 0.92118 1.19934 1.01343 0.92918 0.99322 1.18218 0.98342 0.89645 0.94215 1.41669 1.49375 1.18813 1.08746 0.74709 0.91574 0.77024 0.89893 0.89745 0.75027 0.87578 0.85844 0.83299 0.84958 0.84812 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.45 13.05 55.50 0.72 -22.73 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.13 9.68 -14.93 -0.14 -8.28 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.20 5.29 -10.96 -0.06 -13.26 16 10 C 0.43 9.36 7.85 -10.98 -0.09 9.27 16 11 O -0.60 -14.62 15.24 5.55 0.08 -14.54 16 12 C 0.11 1.89 6.15 -5.19 -0.03 1.86 16 13 N -0.71 -10.37 5.53 -61.47 -0.34 -10.71 16 14 C 0.51 6.91 7.82 -10.98 -0.09 6.82 16 15 O -0.54 -9.34 16.03 5.56 0.09 -9.25 16 16 C -0.08 -0.74 6.21 -29.03 -0.18 -0.92 16 17 C 0.11 1.17 5.58 -81.77 -0.46 0.71 16 18 C -0.18 -2.04 10.95 -37.67 -0.41 -2.46 16 19 C -0.09 -1.11 6.37 -105.14 -0.67 -1.78 16 20 C -0.06 -0.62 9.81 -39.61 -0.39 -1.01 16 21 C -0.06 -0.61 6.28 -39.87 -0.25 -0.86 16 22 Cl -0.08 -0.74 28.93 -51.86 -1.50 -2.24 16 23 C -0.10 -0.85 9.79 -39.51 -0.39 -1.24 16 24 C -0.11 -1.02 10.08 -39.43 -0.40 -1.42 16 25 C 0.10 1.12 7.28 -83.97 -0.61 0.51 16 26 N -0.58 -5.62 6.07 -6.95 -0.04 -5.66 16 27 H 0.42 2.91 8.96 -40.82 -0.37 2.54 16 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.40 9.21 7.90 -40.82 -0.32 8.88 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.41 5.78 7.44 -40.82 -0.30 5.48 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -32.55 354.93 -8.80 -41.35 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -3.88 Total: 14.82 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -4.20 Total: 1.78 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.28 Total: -52.37 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.17 Total: -23.79 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.55 -8.80 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544135973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.519 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds