Wall clock time and date at job start Tue Mar 31 2020 18:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00208 * 2 1 4 4 H 1.48501 * 109.47108 * 95.00403 * 3 2 1 5 5 H 1.48494 * 109.47240 * 215.00585 * 3 2 1 6 6 H 1.48499 * 109.46717 * 335.00928 * 3 2 1 7 7 C 1.38811 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00670 * 174.87688 * 7 2 1 9 9 N 1.36938 * 120.00100 * 354.87604 * 7 2 1 10 10 C 1.46498 * 120.00559 * 185.22665 * 9 7 2 11 11 C 1.53003 * 115.54736 * 56.41599 * 10 9 7 12 12 N 1.46503 * 109.46709 * 84.80307 * 11 10 9 13 13 C 1.34779 * 119.99956 * 184.76134 * 12 11 10 14 14 O 1.21688 * 119.99659 * 4.41595 * 13 12 11 15 15 C 1.46671 * 120.00147 * 184.41689 * 13 12 11 16 16 S 1.76218 * 126.12919 * 355.84585 * 15 13 12 17 17 C 1.70962 * 90.31316 * 179.97438 * 16 15 13 18 18 N 1.29435 * 110.38734 * 0.34960 * 17 16 15 19 19 C 1.30936 * 117.36684 * 359.72414 * 18 17 16 20 20 C 1.50695 * 122.90444 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.47453 * 240.99385 * 20 19 18 22 22 F 1.39898 * 109.47486 * 0.99781 * 20 19 18 23 23 F 1.39902 * 109.47372 * 120.99437 * 20 19 18 24 24 C 1.53001 * 117.49868 * 270.75182 * 10 9 7 25 25 C 1.53004 * 117.50163 * 202.09340 * 10 9 7 26 26 H 0.96989 * 119.99909 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99857 * 5.22613 * 9 7 2 28 28 H 1.09005 * 109.46646 * 204.79574 * 11 10 9 29 29 H 1.08994 * 109.47144 * 324.80110 * 11 10 9 30 30 H 0.97003 * 120.00006 * 4.75339 * 12 11 10 31 31 H 1.08000 * 124.80304 * 180.02562 * 17 16 15 32 32 H 1.09001 * 117.49820 * 359.97438 * 24 10 9 33 33 H 1.09006 * 117.49678 * 145.01589 * 24 10 9 34 34 H 1.08994 * 117.49395 * 214.97804 * 25 10 9 35 35 H 1.09000 * 117.49751 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6035 1.9853 1.3947 5 1 3.4909 1.4730 -0.8031 6 1 1.3987 2.6809 -0.5915 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 -0.0841 9 7 1.3298 -2.3857 0.1048 10 6 2.0666 -3.6467 0.2196 11 6 3.0565 -3.7290 1.3834 12 7 2.3495 -4.1450 2.5972 13 6 3.0033 -4.1932 3.7749 14 8 4.1577 -3.8148 3.8457 15 6 2.3234 -4.7016 4.9709 16 16 0.6341 -5.1920 5.0763 17 6 0.8406 -5.5817 6.7281 18 7 2.0570 -5.3414 7.0994 19 6 2.8805 -4.8719 6.1961 20 6 4.3225 -4.5493 6.4918 21 9 4.5523 -3.1883 6.2630 22 9 4.6034 -4.8514 7.8285 23 9 5.1507 -5.3086 5.6582 24 6 2.4396 -4.3676 -1.0774 25 6 1.3360 -4.9307 -0.1785 26 1 -0.4849 0.8400 -0.0004 27 1 0.3598 -2.3893 0.1035 28 1 3.8338 -4.4561 1.1484 29 1 3.5102 -2.7511 1.5443 30 1 1.4108 -4.3858 2.5534 31 1 0.0644 -5.9682 7.3719 32 1 2.1364 -3.9038 -2.0160 33 1 3.3901 -4.9007 -1.1014 34 1 1.5608 -5.8341 0.3884 35 1 0.3069 -4.8373 -0.5255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569403326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:00 Heat of formation + Delta-G solvation = -89.260285 kcal Electronic energy + Delta-G solvation = -26748.780782 eV Core-core repulsion = 22267.686373 eV Total energy + Delta-G solvation = -4481.094409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -50.02041 -47.55249 -47.46488 -40.60358 -39.31884 -37.58913 -34.05364 -33.11453 -31.75559 -29.80489 -28.39856 -26.20615 -25.06304 -23.97088 -22.31483 -21.60958 -20.45609 -19.72072 -19.09731 -18.41312 -18.15377 -17.34000 -17.07128 -16.80904 -15.85581 -15.72591 -15.40179 -14.81863 -14.48111 -14.30290 -14.26021 -14.23940 -13.93050 -13.83817 -13.62753 -13.59739 -13.48204 -13.11272 -13.06148 -12.32083 -12.05722 -11.85199 -11.09295 -11.06781 -10.92740 -10.51613 -10.39450 -10.31226 -10.09746 -10.05346 -9.83488 -9.74094 -9.53072 -8.97720 -8.81626 -7.13155 -5.91199 -3.21249 -0.35356 0.55845 0.96491 1.78908 2.50017 2.93239 3.00013 3.39244 3.42964 3.45271 3.46125 3.90892 4.25547 4.33509 4.41605 4.51222 4.64137 4.73772 5.08227 5.13108 5.21774 5.35658 5.51063 5.69981 5.96760 6.08628 6.33423 6.42265 6.50053 6.56483 6.68090 6.87043 7.45567 7.63632 8.08187 8.26860 9.38883 9.90333 10.25588 11.30526 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003748 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.855289 B = 7469.029297 C = 7995.204962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.005 4.005 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.687 5.687 10 C 0.130 3.870 11 C 0.147 3.853 12 N -0.697 5.697 13 C 0.578 3.422 14 O -0.506 6.506 15 C -0.226 4.226 16 S 0.240 5.760 17 C 0.025 3.975 18 N -0.443 5.443 19 C 0.035 3.965 20 C 0.551 3.449 21 F -0.155 7.155 22 F -0.169 7.169 23 F -0.160 7.160 24 C -0.191 4.191 25 C -0.191 4.191 26 H 0.257 0.743 27 H 0.388 0.612 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.218 0.782 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 -15.376 11.268 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.325 5.325 10 C 0.036 3.964 11 C 0.022 3.978 12 N -0.346 5.346 13 C 0.360 3.640 14 O -0.383 6.383 15 C -0.353 4.353 16 S 0.497 5.503 17 C -0.271 4.271 18 N -0.155 5.155 19 C -0.106 4.106 20 C 0.493 3.507 21 F -0.136 7.136 22 F -0.151 7.151 23 F -0.141 7.141 24 C -0.233 4.233 25 C -0.229 4.229 26 H 0.067 0.933 27 H 0.223 0.777 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.234 0.766 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.171 -15.071 11.167 18.758 hybrid contribution 0.478 1.029 0.291 1.171 sum 0.307 -14.042 11.458 18.127 Atomic orbital electron populations 1.69656 1.05183 1.26048 1.56747 1.24758 0.95499 0.97794 1.02136 0.86224 0.78797 0.83464 0.77849 1.21433 1.20554 1.21713 1.19149 0.91653 0.83527 1.43110 0.90804 1.41816 1.05176 0.99211 1.86346 1.20141 0.96730 0.86355 0.93224 1.21381 0.93495 1.01214 0.81662 1.45796 1.14150 1.67156 1.07546 1.16633 0.86271 0.79502 0.81564 1.90925 1.16102 1.46946 1.84353 1.25963 0.99253 1.10517 0.99584 1.84245 1.04217 1.52853 1.08960 1.28764 0.96869 1.02948 0.98503 1.65784 1.02246 1.13529 1.33920 1.20365 0.96297 1.04754 0.89214 1.16956 0.83866 0.75581 0.74255 1.93288 1.94963 1.31164 1.94209 1.93210 1.94416 1.93007 1.34418 1.93252 1.73406 1.75694 1.71726 1.23471 0.98033 1.04621 0.97145 1.23101 0.98058 0.96638 1.05061 0.93309 0.77679 0.91706 0.89161 0.76736 0.76605 0.88595 0.89815 0.89418 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.68 13.07 55.49 0.73 -25.95 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.99 29.56 -169.99 -5.02 16.96 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.39 9.26 -15.06 -0.14 -6.53 16 8 H 0.07 1.92 7.60 -52.49 -0.40 1.52 16 9 N -0.69 -15.73 5.54 -47.23 -0.26 -15.99 16 10 C 0.13 2.33 2.31 -131.82 -0.30 2.02 16 11 C 0.15 2.54 5.75 -4.04 -0.02 2.51 16 12 N -0.70 -10.66 5.48 -61.62 -0.34 -11.00 16 13 C 0.58 9.38 7.72 -12.86 -0.10 9.29 16 14 O -0.51 -9.78 13.05 5.20 0.07 -9.71 16 15 C -0.23 -3.04 6.44 -37.10 -0.24 -3.28 16 16 S 0.24 2.05 22.36 -107.50 -2.40 -0.35 16 17 C 0.02 0.20 12.22 51.75 0.63 0.83 16 18 N -0.44 -5.30 10.10 -11.53 -0.12 -5.42 16 19 C 0.04 0.49 6.20 -83.90 -0.52 -0.03 16 20 C 0.55 8.45 2.79 36.00 0.10 8.55 16 21 F -0.16 -2.64 15.72 2.25 0.04 -2.61 16 22 F -0.17 -2.45 17.01 2.25 0.04 -2.41 16 23 F -0.16 -2.54 15.78 2.25 0.04 -2.51 16 24 C -0.19 -3.05 10.11 -26.69 -0.27 -3.32 16 25 C -0.19 -2.73 9.85 -26.69 -0.26 -2.99 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.39 9.44 8.03 -40.82 -0.33 9.11 16 28 H 0.06 1.02 7.91 -51.93 -0.41 0.61 16 29 H 0.09 1.85 7.25 -51.93 -0.38 1.48 16 30 H 0.40 5.30 7.45 -40.82 -0.30 4.99 16 31 H 0.22 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 33 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -31.83 334.21 -6.49 -38.32 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.06 Total: 8.82 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.22 Total: 6.81 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.01 Total: -58.36 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.11 Total: -7.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.40 Total: -0.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.83 -6.49 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569403326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.942 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds