Wall clock time and date at job start Tue Mar 31 2020 18:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00208 * 2 1 4 4 H 1.48501 * 109.47108 * 95.00403 * 3 2 1 5 5 H 1.48494 * 109.47240 * 215.00585 * 3 2 1 6 6 H 1.48499 * 109.46717 * 335.00928 * 3 2 1 7 7 C 1.38811 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00670 * 174.87688 * 7 2 1 9 9 N 1.36938 * 120.00100 * 354.87604 * 7 2 1 10 10 C 1.46498 * 120.00559 * 185.22665 * 9 7 2 11 11 C 1.53003 * 115.54736 * 56.41599 * 10 9 7 12 12 N 1.46503 * 109.46709 * 84.80307 * 11 10 9 13 13 C 1.34779 * 119.99956 * 184.76134 * 12 11 10 14 14 O 1.21688 * 119.99659 * 4.41595 * 13 12 11 15 15 C 1.46671 * 120.00147 * 184.41689 * 13 12 11 16 16 S 1.76218 * 126.12919 * 355.84585 * 15 13 12 17 17 C 1.70962 * 90.31316 * 179.97438 * 16 15 13 18 18 N 1.29435 * 110.38734 * 0.34960 * 17 16 15 19 19 C 1.30936 * 117.36684 * 359.72414 * 18 17 16 20 20 C 1.50695 * 122.90444 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.47453 * 240.99385 * 20 19 18 22 22 F 1.39898 * 109.47486 * 0.99781 * 20 19 18 23 23 F 1.39902 * 109.47372 * 120.99437 * 20 19 18 24 24 C 1.53001 * 117.49868 * 270.75182 * 10 9 7 25 25 C 1.53004 * 117.50163 * 202.09340 * 10 9 7 26 26 H 0.96989 * 119.99909 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99857 * 5.22613 * 9 7 2 28 28 H 1.09005 * 109.46646 * 204.79574 * 11 10 9 29 29 H 1.08994 * 109.47144 * 324.80110 * 11 10 9 30 30 H 0.97003 * 120.00006 * 4.75339 * 12 11 10 31 31 H 1.08000 * 124.80304 * 180.02562 * 17 16 15 32 32 H 1.09001 * 117.49820 * 359.97438 * 24 10 9 33 33 H 1.09006 * 117.49678 * 145.01589 * 24 10 9 34 34 H 1.08994 * 117.49395 * 214.97804 * 25 10 9 35 35 H 1.09000 * 117.49751 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6035 1.9853 1.3947 5 1 3.4909 1.4730 -0.8031 6 1 1.3987 2.6809 -0.5915 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 -0.0841 9 7 1.3298 -2.3857 0.1048 10 6 2.0666 -3.6467 0.2196 11 6 3.0565 -3.7290 1.3834 12 7 2.3495 -4.1450 2.5972 13 6 3.0033 -4.1932 3.7749 14 8 4.1577 -3.8148 3.8457 15 6 2.3234 -4.7016 4.9709 16 16 0.6341 -5.1920 5.0763 17 6 0.8406 -5.5817 6.7281 18 7 2.0570 -5.3414 7.0994 19 6 2.8805 -4.8719 6.1961 20 6 4.3225 -4.5493 6.4918 21 9 4.5523 -3.1883 6.2630 22 9 4.6034 -4.8514 7.8285 23 9 5.1507 -5.3086 5.6582 24 6 2.4396 -4.3676 -1.0774 25 6 1.3360 -4.9307 -0.1785 26 1 -0.4849 0.8400 -0.0004 27 1 0.3598 -2.3893 0.1035 28 1 3.8338 -4.4561 1.1484 29 1 3.5102 -2.7511 1.5443 30 1 1.4108 -4.3858 2.5534 31 1 0.0644 -5.9682 7.3719 32 1 2.1364 -3.9038 -2.0160 33 1 3.3901 -4.9007 -1.1014 34 1 1.5608 -5.8341 0.3884 35 1 0.3069 -4.8373 -0.5255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569403326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:00 Heat of formation + Delta-G solvation = -112.456012 kcal Electronic energy + Delta-G solvation = -26749.786624 eV Core-core repulsion = 22267.686373 eV Total energy + Delta-G solvation = -4482.100251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.21059 -48.72383 -48.70148 -41.58517 -40.48231 -38.97761 -35.47885 -34.89412 -32.70098 -31.66820 -29.52664 -27.42745 -25.97373 -25.93552 -23.51004 -22.77162 -21.54502 -20.94433 -20.30735 -19.61318 -19.41450 -19.12392 -18.19178 -17.92242 -17.15383 -16.83762 -16.65418 -16.05865 -15.89720 -15.55387 -15.48105 -15.37155 -15.29828 -15.08444 -14.95220 -14.85624 -14.80273 -14.69211 -14.04539 -13.81661 -13.52789 -13.00288 -12.86960 -12.80503 -12.28204 -12.20899 -11.91086 -11.77052 -11.58513 -11.11753 -11.01537 -10.95905 -10.64574 -10.50333 -10.19776 -9.00550 -7.98610 -5.25370 -1.23007 -0.25915 0.21809 0.93837 1.44133 1.45389 1.47084 1.52628 1.74224 1.82733 2.38631 2.51181 2.86539 3.04263 3.23850 3.38542 3.45341 3.58255 3.64475 3.76192 3.84246 4.15556 4.31199 4.47132 4.72188 4.83798 4.92253 5.05308 5.18954 5.21900 5.41741 5.54780 6.06508 6.25224 6.27024 6.89261 7.32387 8.04992 8.28358 9.23722 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003748 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.855289 B = 7469.029297 C = 7995.204962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.957 3.043 4 H -0.294 1.294 5 H -0.273 1.273 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.697 5.697 10 C 0.098 3.902 11 C 0.158 3.842 12 N -0.690 5.690 13 C 0.576 3.424 14 O -0.548 6.548 15 C -0.268 4.268 16 S 0.316 5.684 17 C 0.047 3.953 18 N -0.472 5.472 19 C 0.032 3.968 20 C 0.543 3.457 21 F -0.172 7.172 22 F -0.167 7.167 23 F -0.168 7.168 24 C -0.188 4.188 25 C -0.154 4.154 26 H 0.251 0.749 27 H 0.379 0.621 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.409 0.591 31 H 0.268 0.732 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 -17.701 11.845 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.221 1.221 5 H -0.198 1.198 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.335 5.335 10 C 0.005 3.995 11 C 0.033 3.967 12 N -0.341 5.341 13 C 0.360 3.640 14 O -0.428 6.428 15 C -0.395 4.395 16 S 0.575 5.425 17 C -0.247 4.247 18 N -0.185 5.185 19 C -0.111 4.111 20 C 0.486 3.514 21 F -0.153 7.153 22 F -0.149 7.149 23 F -0.149 7.149 24 C -0.228 4.228 25 C -0.192 4.192 26 H 0.060 0.940 27 H 0.212 0.788 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.245 0.755 31 H 0.283 0.717 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.636 -17.452 11.729 21.091 hybrid contribution 0.889 1.608 0.147 1.843 sum -0.747 -15.844 11.876 19.815 Atomic orbital electron populations 1.69760 1.06121 1.25992 1.59197 1.25341 0.96207 1.00293 1.03712 0.85408 0.77975 0.80653 0.77291 1.22143 1.19797 1.21960 1.19377 0.91577 0.84946 1.40421 0.91254 1.41836 1.04859 1.00179 1.86646 1.20354 0.98599 0.86068 0.94455 1.21110 0.93749 0.99659 0.82177 1.45680 1.14545 1.66886 1.06942 1.16992 0.85947 0.78692 0.82356 1.90893 1.18023 1.48710 1.85155 1.25732 1.02614 1.12921 0.98251 1.83990 0.99443 1.50552 1.08503 1.29678 0.96306 0.99653 0.99019 1.65835 1.03550 1.15264 1.33824 1.20174 0.95591 1.05397 0.89916 1.17254 0.85177 0.74831 0.74186 1.93243 1.95214 1.32507 1.94337 1.93201 1.94563 1.92897 1.34192 1.93221 1.73935 1.75743 1.72018 1.23466 1.00017 1.04047 0.95310 1.23217 0.97670 0.95411 1.02881 0.93973 0.78755 0.89959 0.93277 0.75483 0.71665 0.90247 0.87468 0.85953 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.06 13.07 21.65 0.28 -55.77 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 3 Si 0.96 46.03 29.56 68.60 2.03 48.06 16 4 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 5 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.23 -12.28 9.26 84.03 0.78 -11.50 16 8 H 0.07 3.67 7.60 -2.91 -0.02 3.65 16 9 N -0.70 -31.93 5.54 -303.33 -1.68 -33.61 16 10 C 0.10 3.37 2.31 3.61 0.01 3.38 16 11 C 0.16 5.38 5.75 86.38 0.50 5.87 16 12 N -0.69 -20.45 5.48 -467.08 -2.56 -23.01 16 13 C 0.58 18.63 7.72 86.44 0.67 19.30 16 14 O -0.55 -21.84 13.05 -4.31 -0.06 -21.90 16 15 C -0.27 -6.88 6.44 23.88 0.15 -6.73 16 16 S 0.32 4.28 22.36 -56.49 -1.26 3.01 16 17 C 0.05 0.55 12.22 130.60 1.60 2.15 16 18 N -0.47 -10.21 10.10 -190.40 -1.92 -12.13 16 19 C 0.03 0.87 6.20 42.09 0.26 1.13 16 20 C 0.54 17.00 2.79 71.23 0.20 17.20 16 21 F -0.17 -6.11 15.72 44.97 0.71 -5.41 16 22 F -0.17 -4.89 17.01 44.97 0.76 -4.12 16 23 F -0.17 -5.52 15.78 44.97 0.71 -4.81 16 24 C -0.19 -5.57 10.11 30.62 0.31 -5.26 16 25 C -0.15 -3.90 9.85 30.62 0.30 -3.60 16 26 H 0.25 14.38 8.31 -92.72 -0.77 13.61 16 27 H 0.38 18.48 8.03 -92.71 -0.74 17.73 16 28 H 0.08 2.49 7.91 -2.38 -0.02 2.47 16 29 H 0.05 2.08 7.25 -2.39 -0.02 2.06 16 30 H 0.41 10.04 7.45 -92.71 -0.69 9.35 16 31 H 0.27 0.13 8.06 -2.91 -0.02 0.11 16 32 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.11 2.68 8.05 -2.38 -0.02 2.66 16 34 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -72.65 334.21 2.00 -70.64 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.24 Total: 20.12 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 5.24 Total: 18.93 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.88 Total: -124.52 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.90 kcal Atomic # 9 Polarization: -16.52 SS G_CDS: 2.18 Total: -14.34 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.26 Total: 3.01 kcal Total: -72.65 2.00 -70.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569403326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.811 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds