Wall clock time and date at job start Tue Mar 31 2020 19:17:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31521 * 1
3 3 Si 1.86792 * 120.00152 * 2 1
4 4 H 1.48504 * 109.47216 * 359.97438 * 3 2 1
5 5 H 1.48504 * 109.47601 * 119.99776 * 3 2 1
6 6 H 1.48506 * 109.47155 * 240.00051 * 3 2 1
7 7 C 1.37879 * 119.99972 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00299 * 193.82037 * 7 2 1
9 9 C 1.50699 * 119.99686 * 13.82310 * 7 2 1
10 10 O 1.42901 * 112.94096 * 53.33976 * 9 7 2
11 11 C 1.53940 * 113.73240 * 281.63224 * 9 7 2
12 12 N 1.47957 * 86.18105 * 221.92205 * 11 9 7
13 13 C 1.46901 * 111.00157 * 137.58142 * 12 11 9
14 14 C 1.50709 * 109.46798 * 70.64161 * 13 12 11
15 15 O 1.33632 * 125.80500 * 269.69019 * 14 13 12
16 16 C 1.34219 * 110.91918 * 179.88275 * 15 14 13
17 17 C 1.34159 * 109.14516 * 0.38702 * 16 15 14
18 18 C 1.50699 * 127.02391 * 179.73717 * 17 16 15
19 19 F 1.39898 * 109.47143 * 0.04629 * 18 17 16
20 20 F 1.39901 * 109.47396 * 120.04316 * 18 17 16
21 21 F 1.39898 * 109.47441 * 240.04403 * 18 17 16
22 22 C 1.36499 * 125.80600 * 90.00238 * 14 13 12
23 23 C 1.47227 * 127.20505 * 359.96648 * 22 14 13
24 24 O 1.21531 * 120.00309 * 89.99128 * 23 22 14
25 25 O 1.34770 * 119.99323 * 270.00095 * 23 22 14
26 26 C 1.47962 * 90.76408 * 24.69162 * 12 11 9
27 27 H 0.97001 * 119.99982 * 185.88094 * 1 2 3
28 28 H 0.96693 * 113.99776 * 303.03764 * 10 9 7
29 29 H 1.08994 * 113.76253 * 336.24193 * 11 9 7
30 30 H 1.09001 * 113.75976 * 107.61000 * 11 9 7
31 31 H 1.08996 * 109.47660 * 190.64172 * 13 12 11
32 32 H 1.08995 * 109.47247 * 310.64826 * 13 12 11
33 33 H 1.07995 * 125.42785 * 180.16568 * 16 15 14
34 34 H 0.96709 * 116.99564 * 179.97438 * 25 23 22
35 35 H 1.08999 * 113.76019 * 220.99396 * 26 12 11
36 36 H 1.09000 * 113.75802 * 89.62709 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 1.2842 2.7464 -0.0006
5 1 3.1030 1.6964 1.2125
6 1 3.1030 1.6963 -1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0611 -1.2076 0.2240
9 6 1.2838 -2.4804 -0.3107
10 8 0.5652 -2.4316 -1.5449
11 6 0.4593 -3.0293 0.8677
12 7 0.9801 -4.3599 0.4835
13 6 1.3699 -5.1350 1.6689
14 6 0.1348 -5.5486 2.4270
15 8 -0.4520 -4.8523 3.4050
16 6 -1.5337 -5.4969 3.8697
17 6 -1.6781 -6.6518 3.2026
18 6 -2.7540 -7.6876 3.4037
19 9 -3.6201 -7.2692 4.4196
20 9 -3.4736 -7.8496 2.2149
21 9 -2.1674 -8.9057 3.7634
22 6 -0.5713 -6.7010 2.2354
23 6 -0.2848 -7.7696 1.2640
24 8 0.4350 -8.6977 1.5762
25 8 -0.8208 -7.7184 0.0286
26 6 2.1608 -3.7357 -0.1536
27 1 -0.4850 -0.8356 0.0861
28 1 -0.0834 -1.7161 -1.5944
29 1 0.8054 -2.6871 1.8429
30 1 -0.6177 -2.9248 0.7366
31 1 1.9196 -6.0233 1.3576
32 1 2.0025 -4.5228 2.3115
33 1 -2.1823 -5.1439 4.6578
34 1 -0.6036 -8.4425 -0.5745
35 1 2.4432 -4.1954 -1.1006
36 1 3.0045 -3.6001 0.5231
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001574242681.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:17:31
Heat of formation + Delta-G solvation = -255.283490 kcal
Electronic energy + Delta-G solvation = -29766.195035 eV
Core-core repulsion = 24802.855698 eV
Total energy + Delta-G solvation = -4963.339337 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 335.086 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-51.33115 -48.85730 -48.82053 -44.16087 -41.16077 -41.03899 -37.26202 -36.78656
-34.97087 -34.27419 -33.27013 -29.92095 -27.73586 -27.39735 -26.95003 -25.77991
-24.16864 -22.50628 -21.62891 -20.76770 -20.05483 -19.73616 -19.68724 -19.22391
-19.09314 -18.30476 -17.77652 -17.07620 -16.79484 -16.63246 -16.45061 -16.23408
-15.83019 -15.67855 -15.64978 -15.57100 -15.25291 -14.97419 -14.96920 -14.95077
-14.50057 -14.31600 -13.88494 -13.74048 -13.45348 -13.20219 -12.85413 -12.78608
-12.69192 -12.53818 -12.21297 -12.16817 -11.92872 -11.52191 -11.09745 -10.72015
-10.45947 -10.03909 -9.72119 -8.64967 -6.45371 0.09836 0.34822 0.69337
1.18232 1.47980 1.58215 1.62698 1.83577 1.97107 2.46324 2.54517
2.59547 2.87204 3.00144 3.18169 3.21903 3.58561 3.70849 3.77472
3.90719 3.96972 4.07117 4.16066 4.23616 4.43608 4.48835 4.58460
4.71016 4.86243 5.12122 5.15073 5.26137 5.47120 5.80401 5.94705
6.09775 6.48037 6.73738 7.00829 7.31835 8.66774
Molecular weight = 335.09amu
Principal moments of inertia in cm(-1)
A = 0.019119 B = 0.003331 C = 0.003102
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1464.165598 B = 8403.907717 C = 9023.055438
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.004 4.004
3 Si 1.107 2.893
4 H -0.285 1.285
5 H -0.270 1.270
6 H -0.277 1.277
7 C -0.636 4.636
8 H 0.058 0.942
9 C 0.197 3.803
10 O -0.574 6.574
11 C -0.006 4.006
12 N -0.472 5.472
13 C 0.085 3.915
14 C 0.078 3.922
15 O -0.155 6.155
16 C 0.087 3.913
17 C -0.282 4.282
18 C 0.547 3.453
19 F -0.162 7.162
20 F -0.177 7.177
21 F -0.178 7.178
22 C -0.186 4.186
23 C 0.567 3.433
24 O -0.521 6.521
25 O -0.494 6.494
26 C 0.031 3.969
27 H 0.264 0.736
28 H 0.368 0.632
29 H 0.068 0.932
30 H 0.057 0.943
31 H 0.118 0.882
32 H 0.083 0.917
33 H 0.273 0.727
34 H 0.434 0.566
35 H 0.086 0.914
36 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.431 -12.586 8.571 15.609
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.206 4.206
3 Si 0.930 3.070
4 H -0.211 1.211
5 H -0.195 1.195
6 H -0.202 1.202
7 C -0.674 4.674
8 H 0.076 0.924
9 C 0.156 3.844
10 O -0.380 6.380
11 C -0.136 4.136
12 N -0.195 5.195
13 C -0.043 4.043
14 C 0.026 3.974
15 O -0.049 6.049
16 C 0.018 3.982
17 C -0.285 4.285
18 C 0.492 3.508
19 F -0.143 7.143
20 F -0.158 7.158
21 F -0.159 7.159
22 C -0.189 4.189
23 C 0.410 3.590
24 O -0.411 6.411
25 O -0.307 6.307
26 C -0.097 4.097
27 H 0.075 0.925
28 H 0.216 0.784
29 H 0.086 0.914
30 H 0.075 0.925
31 H 0.136 0.864
32 H 0.101 0.899
33 H 0.288 0.712
34 H 0.296 0.704
35 H 0.104 0.896
36 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -3.472 -11.669 8.432 14.810
hybrid contribution -0.002 -1.687 0.238 1.703
sum -3.474 -13.356 8.670 16.298
Atomic orbital electron populations
1.70986 1.07704 1.30650 1.46282 1.27077 0.96382 1.05889 0.91208
0.83048 0.74369 0.71848 0.77749 1.21055 1.19478 1.20241 1.22612
0.97589 0.93883 1.53306 0.92386 1.20334 0.89333 0.93386 0.81301
1.86221 1.56961 1.55915 1.38925 1.24629 0.99656 0.88992 1.00284
1.68756 1.19567 1.12974 1.18251 1.21448 0.89399 1.01737 0.91677
1.22430 0.96751 0.88490 0.89720 1.83939 1.34856 1.44257 1.41848
1.24734 0.87024 0.88611 0.97787 1.21280 1.00574 1.00655 1.05975
1.17078 0.79977 0.79581 0.74135 1.93212 1.71166 1.89880 1.60051
1.93239 1.79446 1.95800 1.47354 1.93238 1.84100 1.46816 1.91754
1.19746 1.00089 0.97858 1.01213 1.19629 0.75505 0.82907 0.80999
1.90917 1.36115 1.34713 1.79364 1.84711 1.68669 1.53866 1.23433
1.24027 0.92930 0.92984 0.99776 0.92522 0.78387 0.91399 0.92479
0.86416 0.89852 0.71185 0.70376 0.89580 0.89106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -49.57 12.80 21.45 0.27 -49.30 16
2 C 0.00 -0.22 5.26 84.65 0.45 0.23 16
3 Si 1.11 45.67 29.93 68.60 2.05 47.73 16
4 H -0.29 -11.89 7.11 99.48 0.71 -11.19 16
5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16
6 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16
7 C -0.64 -32.34 8.56 25.60 0.22 -32.12 16
8 H 0.06 2.90 7.85 -2.91 -0.02 2.88 16
9 C 0.20 9.22 1.08 -10.89 -0.01 9.21 16
10 O -0.57 -28.85 13.45 -148.98 -2.00 -30.86 16
11 C -0.01 -0.26 5.90 86.41 0.51 0.25 16
12 N -0.47 -17.38 6.25 -915.43 -5.72 -23.11 16
13 C 0.08 2.51 5.18 85.56 0.44 2.95 16
14 C 0.08 2.25 6.41 25.28 0.16 2.41 16
15 O -0.16 -3.98 10.52 4.61 0.05 -3.93 16
16 C 0.09 1.69 11.49 66.89 0.77 2.46 16
17 C -0.28 -6.89 5.80 -18.48 -0.11 -7.00 16
18 C 0.55 12.73 3.50 71.24 0.25 12.98 16
19 F -0.16 -3.10 16.81 44.97 0.76 -2.34 16
20 F -0.18 -4.55 17.30 44.97 0.78 -3.77 16
21 F -0.18 -4.53 17.30 44.97 0.78 -3.75 16
22 C -0.19 -5.42 6.20 -19.01 -0.12 -5.54 16
23 C 0.57 16.86 7.77 70.18 0.55 17.40 16
24 O -0.52 -17.13 17.90 19.73 0.35 -16.78 16
25 O -0.49 -12.67 13.44 -56.81 -0.76 -13.43 16
26 C 0.03 1.18 7.36 86.41 0.64 1.82 16
27 H 0.26 14.14 5.52 -92.71 -0.51 13.62 16
28 H 0.37 18.66 6.95 -74.06 -0.52 18.14 16
29 H 0.07 2.85 7.73 -2.39 -0.02 2.83 16
30 H 0.06 2.55 7.79 -2.39 -0.02 2.53 16
31 H 0.12 3.15 7.93 -2.39 -0.02 3.13 16
32 H 0.08 2.27 7.69 -2.39 -0.02 2.26 16
33 H 0.27 2.35 7.96 -2.91 -0.02 2.33 16
34 H 0.43 6.46 9.11 -74.05 -0.67 5.79 16
35 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16
36 H 0.09 3.16 7.74 -2.39 -0.02 3.14 16
Total: -1.00 -66.22 335.96 0.55 -65.67
By element:
Atomic # 1 Polarization: 28.56 SS G_CDS: 0.26 Total: 28.82 kcal
Atomic # 6 Polarization: 1.32 SS G_CDS: 3.74 Total: 5.06 kcal
Atomic # 7 Polarization: -66.96 SS G_CDS: -5.45 Total: -72.41 kcal
Atomic # 8 Polarization: -62.64 SS G_CDS: -2.37 Total: -65.00 kcal
Atomic # 9 Polarization: -12.17 SS G_CDS: 2.31 Total: -9.86 kcal
Atomic # 14 Polarization: 45.67 SS G_CDS: 2.05 Total: 47.73 kcal
Total: -66.22 0.55 -65.67 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001574242681.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -189.618 kcal
(2) G-P(sol) polarization free energy of solvation -66.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) -255.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds