Wall clock time and date at job start Tue Mar 31 2020 18:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.33503 * 126.69003 * 2 1 4 4 N 1.20660 * 113.45743 * 179.69838 * 3 2 1 5 5 C 1.31168 * 112.02473 * 0.50146 * 4 3 2 6 6 C 1.47607 * 127.47467 * 179.79975 * 5 4 3 7 7 C 1.34926 * 125.27086 * 324.67880 * 6 5 4 8 8 C 1.37788 * 114.71210 * 180.27300 * 7 6 5 9 9 C 1.33743 * 115.07808 * 359.49326 * 8 7 6 10 10 S 1.75860 * 109.75054 * 0.47665 * 9 8 7 11 11 C 1.37165 * 126.68485 * 179.97438 * 2 1 3 12 12 C 1.47225 * 128.57906 * 359.97438 * 11 2 1 13 13 O 1.21629 * 119.99616 * 270.02187 * 12 11 2 14 14 N 1.34767 * 119.99955 * 90.02363 * 12 11 2 15 15 C 1.46502 * 119.99978 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47358 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99983 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00331 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00103 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00329 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99925 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47290 * 59.99824 * 23 21 19 25 25 H 1.48497 * 109.46979 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47068 * 299.99926 * 23 21 19 27 27 H 1.09002 * 109.47764 * 270.00526 * 1 2 3 28 28 H 1.09004 * 109.46927 * 30.00365 * 1 2 3 29 29 H 1.09000 * 109.47711 * 149.99960 * 1 2 3 30 30 H 1.08002 * 122.64107 * 359.97438 * 7 6 5 31 31 H 1.08002 * 122.46172 * 179.72800 * 8 7 6 32 32 H 1.08004 * 125.12458 * 180.21400 * 9 8 7 33 33 H 0.96996 * 120.00553 * 0.02562 * 14 12 11 34 34 H 1.08998 * 109.47462 * 300.00111 * 15 14 12 35 35 H 1.09003 * 109.47116 * 60.00334 * 15 14 12 36 36 H 0.97003 * 119.99706 * 359.97438 * 18 16 15 37 37 H 0.97001 * 120.00185 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3046 1.0705 0.0000 4 7 3.4791 0.7943 0.0058 5 6 3.6797 -0.5019 0.0001 6 6 4.9746 -1.2103 0.0003 7 6 6.0913 -0.7926 -0.6315 8 6 7.1787 -1.6272 -0.4914 9 6 6.9655 -2.7155 0.2560 10 16 5.3012 -2.7296 0.8240 11 6 2.3264 -1.1000 0.0005 12 6 1.9519 -2.5238 0.0016 13 8 1.7972 -3.1110 1.0555 14 7 1.7805 -3.1764 -1.1650 15 6 1.4084 -4.5934 -1.1638 16 6 1.2799 -5.0802 -2.5842 17 8 1.4800 -4.3186 -3.5068 18 7 0.9427 -6.3619 -2.8295 19 6 0.8264 -6.8049 -4.1216 20 1 1.0045 -6.1267 -4.9431 21 6 0.4782 -8.1261 -4.3745 22 7 0.2609 -8.9511 -3.3750 23 14 0.3190 -8.7295 -6.1351 24 1 1.6174 -8.5602 -6.8358 25 1 -0.0588 -10.1656 -6.1339 26 1 -0.7276 -7.9424 -6.8354 27 1 -0.3635 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 6.1283 0.1212 -1.2059 31 1 8.1342 -1.4159 -0.9484 32 1 7.7029 -3.4738 0.4741 33 1 1.9043 -2.7082 -2.0054 34 1 2.1770 -5.1705 -0.6497 35 1 0.4554 -4.7184 -0.6498 36 1 0.7831 -6.9711 -2.0917 37 1 0.0182 -9.8735 -3.5515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586912705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:39 Heat of formation + Delta-G solvation = 21.694509 kcal Electronic energy + Delta-G solvation = -25380.596949 eV Core-core repulsion = 21446.170641 eV Total energy + Delta-G solvation = -3934.426308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.01530 -39.61328 -38.16761 -37.98266 -34.54306 -34.28755 -33.77437 -33.64753 -31.43061 -29.53361 -28.64767 -27.62099 -25.24009 -24.72079 -23.77505 -21.67844 -20.46058 -19.71378 -19.01388 -18.28843 -18.02332 -17.96975 -17.57918 -16.31244 -15.87650 -15.58162 -15.38538 -15.32061 -14.58105 -14.28327 -14.13741 -13.77123 -13.55832 -13.43933 -13.33788 -13.25142 -12.93728 -12.68957 -12.57738 -12.27217 -12.02041 -11.67191 -11.49683 -11.13683 -10.98524 -10.63393 -10.53779 -10.36553 -10.19677 -9.66879 -9.58195 -8.97021 -8.72911 -8.69379 -8.66175 -8.14704 -6.55477 -3.97639 0.40551 1.11504 1.24984 1.73764 1.96654 2.38487 2.63145 2.64806 3.10813 3.19004 3.20921 3.28953 3.68378 3.76295 4.07495 4.15469 4.67657 4.75148 4.79569 4.86111 4.98441 5.12745 5.13890 5.20801 5.29728 5.36135 5.41994 5.65657 5.80422 5.81989 5.86241 5.99249 6.05022 6.19178 6.48429 7.42097 7.59710 7.86677 7.96004 8.19787 8.40430 9.00295 9.34053 9.81845 10.61186 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.003085 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.837369 B = 9072.672520 C =10245.716434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.024 3.976 3 O 0.106 5.894 4 N -0.339 5.339 5 C 0.123 3.877 6 C -0.141 4.141 7 C -0.096 4.096 8 C -0.140 4.140 9 C -0.210 4.210 10 S 0.177 5.823 11 C -0.237 4.237 12 C 0.594 3.406 13 O -0.526 6.526 14 N -0.691 5.691 15 C 0.108 3.892 16 C 0.427 3.573 17 O -0.596 6.596 18 N -0.547 5.547 19 C -0.306 4.306 20 H 0.105 0.895 21 C 0.027 3.973 22 N -0.894 5.894 23 Si 0.933 3.067 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.170 0.830 33 H 0.414 0.586 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.396 0.604 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.320 14.536 8.820 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 O 0.041 5.959 4 N -0.044 5.044 5 C -0.038 4.038 6 C -0.260 4.260 7 C -0.130 4.130 8 C -0.170 4.170 9 C -0.347 4.347 10 S 0.443 5.557 11 C -0.245 4.245 12 C 0.377 3.623 13 O -0.403 6.403 14 N -0.344 5.344 15 C -0.019 4.019 16 C 0.212 3.788 17 O -0.483 6.483 18 N -0.181 5.181 19 C -0.436 4.436 20 H 0.123 0.877 21 C -0.176 4.176 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.188 0.812 33 H 0.252 0.748 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.230 0.770 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.202 14.426 9.851 18.537 hybrid contribution 0.534 -0.379 -1.689 1.811 sum 6.736 14.047 8.162 17.587 Atomic orbital electron populations 1.20522 0.82713 1.05512 1.04965 1.24535 0.96082 0.84697 0.98600 1.84502 1.11045 1.32924 1.67475 1.74106 0.95543 1.15196 1.19514 1.21789 0.91225 0.88445 1.02378 1.21609 0.94028 1.01137 1.09190 1.20333 0.91001 1.01271 1.00364 1.20026 1.00282 0.94904 1.01814 1.26030 1.00140 1.03432 1.05110 1.84809 1.04821 1.17304 1.48790 1.21916 0.92095 0.95589 1.14896 1.16711 0.77625 0.83784 0.84209 1.90830 1.50922 1.67516 1.31073 1.45654 1.68472 1.11434 1.08869 1.21044 1.02050 0.81395 0.97451 1.19672 0.85771 0.84001 0.89346 1.90511 1.57212 1.55272 1.45267 1.41774 1.58724 1.08364 1.09265 1.19682 1.44756 0.95089 0.84037 0.87706 1.25320 0.96606 0.95750 0.99899 1.69601 1.46099 1.06190 1.31495 0.85877 0.79083 0.77527 0.81524 1.19754 1.20819 1.19741 0.88429 0.88829 0.88435 0.83831 0.83678 0.81209 0.74796 0.89451 0.89415 0.77010 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.32 36.00 0.37 -0.25 16 2 C 0.02 0.28 7.53 -34.70 -0.26 0.02 16 3 O 0.11 1.30 11.04 18.63 0.21 1.51 16 4 N -0.34 -4.77 12.08 34.55 0.42 -4.35 16 5 C 0.12 1.80 7.36 -80.35 -0.59 1.21 16 6 C -0.14 -1.98 6.41 -36.94 -0.24 -2.21 16 7 C -0.10 -1.16 10.09 -40.92 -0.41 -1.57 16 8 C -0.14 -1.45 10.16 -41.32 -0.42 -1.87 16 9 C -0.21 -2.21 11.23 29.16 0.33 -1.88 16 10 S 0.18 2.34 23.07 -107.50 -2.48 -0.14 16 11 C -0.24 -3.42 6.26 -102.66 -0.64 -4.06 16 12 C 0.59 9.54 7.32 -12.61 -0.09 9.45 16 13 O -0.53 -9.61 17.11 5.25 0.09 -9.52 16 14 N -0.69 -11.41 5.52 -62.63 -0.35 -11.76 16 15 C 0.11 1.90 6.15 -5.19 -0.03 1.87 16 16 C 0.43 9.46 7.85 -10.98 -0.09 9.38 16 17 O -0.60 -14.92 15.24 5.55 0.08 -14.83 16 18 N -0.55 -13.15 5.29 -10.96 -0.06 -13.21 16 19 C -0.31 -8.14 9.68 -14.93 -0.14 -8.28 16 20 H 0.11 2.91 7.16 -52.49 -0.38 2.53 16 21 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 22 N -0.89 -23.35 13.05 55.50 0.72 -22.62 16 23 Si 0.93 20.17 29.55 -169.99 -5.02 15.14 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.41 6.97 7.42 -40.82 -0.30 6.66 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.40 9.13 7.90 -40.82 -0.32 8.80 16 37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -31.72 354.76 -6.87 -38.59 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -3.52 Total: 13.46 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.32 Total: 2.39 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.74 Total: -51.94 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.38 Total: -22.84 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.48 Total: -0.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.72 -6.87 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586912705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.287 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds