Wall clock time and date at job start Tue Mar 31 2020 18:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.33503 * 126.69003 * 2 1 4 4 N 1.20660 * 113.45743 * 179.69838 * 3 2 1 5 5 C 1.31168 * 112.02473 * 0.50146 * 4 3 2 6 6 C 1.47607 * 127.47467 * 179.79975 * 5 4 3 7 7 C 1.34926 * 125.27086 * 324.67880 * 6 5 4 8 8 C 1.37788 * 114.71210 * 180.27300 * 7 6 5 9 9 C 1.33743 * 115.07808 * 359.49326 * 8 7 6 10 10 S 1.75860 * 109.75054 * 0.47665 * 9 8 7 11 11 C 1.37165 * 126.68485 * 179.97438 * 2 1 3 12 12 C 1.47225 * 128.57906 * 359.97438 * 11 2 1 13 13 O 1.21629 * 119.99616 * 270.02187 * 12 11 2 14 14 N 1.34767 * 119.99955 * 90.02363 * 12 11 2 15 15 C 1.46502 * 119.99978 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47358 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99983 * 0.02562 * 16 15 14 18 18 N 1.34781 * 120.00331 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00103 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00329 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99925 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47290 * 59.99824 * 23 21 19 25 25 H 1.48497 * 109.46979 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47068 * 299.99926 * 23 21 19 27 27 H 1.09002 * 109.47764 * 270.00526 * 1 2 3 28 28 H 1.09004 * 109.46927 * 30.00365 * 1 2 3 29 29 H 1.09000 * 109.47711 * 149.99960 * 1 2 3 30 30 H 1.08002 * 122.64107 * 359.97438 * 7 6 5 31 31 H 1.08002 * 122.46172 * 179.72800 * 8 7 6 32 32 H 1.08004 * 125.12458 * 180.21400 * 9 8 7 33 33 H 0.96996 * 120.00553 * 0.02562 * 14 12 11 34 34 H 1.08998 * 109.47462 * 300.00111 * 15 14 12 35 35 H 1.09003 * 109.47116 * 60.00334 * 15 14 12 36 36 H 0.97003 * 119.99706 * 359.97438 * 18 16 15 37 37 H 0.97001 * 120.00185 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3046 1.0705 0.0000 4 7 3.4791 0.7943 0.0058 5 6 3.6797 -0.5019 0.0001 6 6 4.9746 -1.2103 0.0003 7 6 6.0913 -0.7926 -0.6315 8 6 7.1787 -1.6272 -0.4914 9 6 6.9655 -2.7155 0.2560 10 16 5.3012 -2.7296 0.8240 11 6 2.3264 -1.1000 0.0005 12 6 1.9519 -2.5238 0.0016 13 8 1.7972 -3.1110 1.0555 14 7 1.7805 -3.1764 -1.1650 15 6 1.4084 -4.5934 -1.1638 16 6 1.2799 -5.0802 -2.5842 17 8 1.4800 -4.3186 -3.5068 18 7 0.9427 -6.3619 -2.8295 19 6 0.8264 -6.8049 -4.1216 20 1 1.0045 -6.1267 -4.9431 21 6 0.4782 -8.1261 -4.3745 22 7 0.2609 -8.9511 -3.3750 23 14 0.3190 -8.7295 -6.1351 24 1 1.6174 -8.5602 -6.8358 25 1 -0.0588 -10.1656 -6.1339 26 1 -0.7276 -7.9424 -6.8354 27 1 -0.3635 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 6.1283 0.1212 -1.2059 31 1 8.1342 -1.4159 -0.9484 32 1 7.7029 -3.4738 0.4741 33 1 1.9043 -2.7082 -2.0054 34 1 2.1770 -5.1705 -0.6497 35 1 0.4554 -4.7184 -0.6498 36 1 0.7831 -6.9711 -2.0917 37 1 0.0182 -9.8735 -3.5515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586912705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:38 Heat of formation + Delta-G solvation = 0.018686 kcal Electronic energy + Delta-G solvation = -25381.536883 eV Core-core repulsion = 21446.170641 eV Total energy + Delta-G solvation = -3935.366242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.03748 -41.03836 -39.88689 -38.88447 -36.27494 -35.44813 -35.20976 -34.61460 -33.37294 -30.48797 -29.84136 -28.76981 -26.76649 -25.87424 -25.02047 -22.65987 -21.65065 -21.41775 -20.18657 -19.90730 -19.24937 -18.95733 -18.71061 -17.61479 -17.16778 -17.03136 -16.74796 -16.60857 -16.27916 -15.74949 -15.57940 -15.10258 -14.74164 -14.37090 -14.26080 -14.07937 -13.99388 -13.73616 -13.60107 -13.54599 -13.53892 -13.41343 -12.90120 -12.46634 -12.45206 -12.13710 -11.90959 -11.64079 -11.56214 -11.50074 -10.61278 -10.53859 -10.34795 -10.09021 -9.66821 -9.62437 -8.50569 -6.00606 -0.53974 0.15092 0.28726 0.81904 0.99705 1.16912 1.38383 1.43535 1.53485 1.61732 1.74054 1.90531 2.05978 2.31145 2.75774 3.08556 3.15877 3.17463 3.61356 3.73303 4.05560 4.11823 4.19576 4.29907 4.39903 4.41031 4.48389 4.52218 4.57410 4.66918 4.97069 5.05089 5.08101 5.17205 5.35771 5.38717 5.91398 6.26586 6.48448 6.88674 6.97257 7.04081 7.43854 7.94515 8.65911 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.003085 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.837369 B = 9072.672520 C =10245.716434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.048 3.952 3 O 0.112 5.888 4 N -0.353 5.353 5 C 0.113 3.887 6 C -0.170 4.170 7 C -0.091 4.091 8 C -0.143 4.143 9 C -0.193 4.193 10 S 0.125 5.875 11 C -0.273 4.273 12 C 0.607 3.393 13 O -0.550 6.550 14 N -0.691 5.691 15 C 0.121 3.879 16 C 0.433 3.567 17 O -0.624 6.624 18 N -0.556 5.556 19 C -0.338 4.338 20 H 0.086 0.914 21 C -0.007 4.007 22 N -0.914 5.914 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.270 1.270 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.200 0.800 33 H 0.413 0.587 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.400 0.600 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.647 15.042 8.559 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.016 4.016 3 O 0.048 5.952 4 N -0.058 5.058 5 C -0.047 4.047 6 C -0.288 4.288 7 C -0.126 4.126 8 C -0.172 4.172 9 C -0.330 4.330 10 S 0.389 5.611 11 C -0.281 4.281 12 C 0.391 3.609 13 O -0.429 6.429 14 N -0.344 5.344 15 C -0.006 4.006 16 C 0.220 3.780 17 O -0.513 6.513 18 N -0.192 5.192 19 C -0.467 4.467 20 H 0.104 0.896 21 C -0.208 4.208 22 N -0.554 5.554 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.195 1.195 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.171 0.829 31 H 0.196 0.804 32 H 0.217 0.783 33 H 0.251 0.749 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.234 0.766 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.530 14.947 9.608 18.930 hybrid contribution 0.478 -0.446 -1.583 1.712 sum 7.008 14.501 8.025 17.994 Atomic orbital electron populations 1.20796 0.79798 1.06793 1.06489 1.25167 0.97345 0.83569 0.95488 1.84486 1.10730 1.32921 1.67098 1.74076 0.96298 1.14996 1.20402 1.22006 0.91709 0.88692 1.02315 1.21759 0.94593 1.01634 1.10820 1.20663 0.90954 1.01618 0.99327 1.20377 1.01022 0.94254 1.01530 1.26386 0.98650 1.04010 1.03949 1.84918 1.07809 1.18118 1.50227 1.21812 0.92914 0.95204 1.18147 1.16754 0.76504 0.84265 0.83365 1.90808 1.51978 1.68326 1.31748 1.45628 1.68742 1.10873 1.09110 1.20896 1.03400 0.82163 0.94175 1.20341 0.83695 0.83112 0.90877 1.90490 1.57904 1.55907 1.46958 1.41805 1.59534 1.09116 1.08709 1.19684 1.46714 0.95629 0.84670 0.89640 1.26079 0.95705 0.95376 1.03676 1.69664 1.46154 1.06527 1.33075 0.84968 0.78955 0.77387 0.76945 1.19621 1.19629 1.19457 0.86553 0.85844 0.88780 0.82878 0.80413 0.78284 0.74938 0.88440 0.87614 0.76608 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.32 71.23 0.74 -0.36 16 2 C 0.05 1.07 7.53 25.43 0.19 1.26 16 3 O 0.11 2.66 11.04 76.90 0.85 3.51 16 4 N -0.35 -9.81 12.08 -45.09 -0.54 -10.36 16 5 C 0.11 3.34 7.36 44.30 0.33 3.67 16 6 C -0.17 -4.77 6.41 23.98 0.15 -4.62 16 7 C -0.09 -2.13 10.09 21.40 0.22 -1.91 16 8 C -0.14 -2.66 10.16 21.14 0.21 -2.44 16 9 C -0.19 -3.74 11.23 66.80 0.75 -2.99 16 10 S 0.12 3.30 23.07 -56.49 -1.30 2.00 16 11 C -0.27 -7.84 6.26 -18.59 -0.12 -7.95 16 12 C 0.61 19.47 7.32 86.61 0.63 20.10 16 13 O -0.55 -20.10 17.11 -4.12 -0.07 -20.17 16 14 N -0.69 -22.76 5.52 -470.31 -2.60 -25.36 16 15 C 0.12 4.22 6.15 85.63 0.53 4.74 16 16 C 0.43 19.34 7.85 87.66 0.69 20.03 16 17 O -0.62 -31.68 15.24 -3.07 -0.05 -31.73 16 18 N -0.56 -27.08 5.29 -306.98 -1.62 -28.70 16 19 C -0.34 -18.19 9.68 84.04 0.81 -17.38 16 20 H 0.09 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 22 N -0.91 -47.49 13.05 21.66 0.28 -47.21 16 23 Si 0.99 40.93 29.55 68.60 2.03 42.96 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 30 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 31 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.41 14.00 7.42 -92.71 -0.69 13.31 16 34 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 36 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 37 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -68.86 354.76 2.32 -66.54 By element: Atomic # 1 Polarization: 36.52 SS G_CDS: -0.26 Total: 36.26 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.60 Total: 12.25 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -4.48 Total: -111.62 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: 0.73 Total: -48.39 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.30 Total: 2.00 kcal Total: -68.86 2.32 -66.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586912705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.562 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds