Wall clock time and date at job start Tue Mar 31 2020 19:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99853 * 2 1 4 4 H 1.48509 * 109.47201 * 240.00193 * 3 2 1 5 5 H 1.48496 * 109.47520 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47319 * 120.00468 * 3 2 1 7 7 C 1.37867 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00054 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64219 * 56.86218 * 9 7 2 11 11 C 1.55153 * 110.71965 * 180.02562 * 9 7 2 12 12 C 1.54911 * 101.61849 * 154.02392 * 11 9 7 13 13 N 1.47464 * 104.80740 * 323.04000 * 12 11 9 14 14 C 1.34773 * 125.62778 * 204.04645 * 13 12 11 15 15 O 1.21736 * 120.00009 * 174.18566 * 14 13 12 16 16 C 1.46336 * 120.00173 * 354.18352 * 14 13 12 17 17 S 1.75807 * 125.48971 * 5.90507 * 16 14 13 18 18 C 1.70534 * 91.75480 * 179.97438 * 17 16 14 19 19 C 1.33423 * 111.32352 * 359.97438 * 18 17 16 20 20 C 1.37812 * 125.49072 * 185.59160 * 16 14 13 21 21 C 1.48246 * 123.58035 * 0.02562 * 20 16 14 22 22 N 1.34115 * 126.68525 * 6.15014 * 21 20 16 23 23 N 1.28980 * 107.26174 * 179.89642 * 22 21 20 24 24 N 1.28725 * 108.96669 * 0.37342 * 23 22 21 25 25 H 0.97010 * 125.33311 * 179.73483 * 24 23 22 26 26 N 1.28868 * 109.34383 * 359.76558 * 24 23 22 27 27 C 1.47022 * 108.72373 * 24.07119 * 13 12 11 28 28 H 0.97005 * 119.99775 * 0.02562 * 1 2 3 29 29 H 0.96705 * 113.99443 * 303.14240 * 10 9 7 30 30 H 1.09004 * 111.00875 * 272.11609 * 11 9 7 31 31 H 1.08999 * 111.00717 * 35.92869 * 11 9 7 32 32 H 1.08997 * 110.36978 * 81.84671 * 12 11 9 33 33 H 1.09002 * 110.36742 * 204.16779 * 12 11 9 34 34 H 1.08000 * 124.33875 * 180.02562 * 18 17 16 35 35 H 1.08004 * 122.46739 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.88291 * 239.55386 * 27 13 12 37 37 H 1.09001 * 110.01275 * 118.46356 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.3655 -2.5696 -1.1200 11 6 2.2332 -3.7001 -0.0005 12 6 1.3749 -4.8052 0.6641 13 7 0.5905 -4.1032 1.6968 14 6 0.0653 -4.6673 2.8024 15 8 -0.4755 -3.9718 3.6424 16 6 0.1449 -6.1161 2.9929 17 16 1.0147 -7.2359 1.9537 18 6 0.5537 -8.5674 2.9143 19 6 -0.2025 -8.1838 3.9444 20 6 -0.4449 -6.8216 4.0193 21 6 -1.2557 -6.1907 5.0881 22 7 -1.6278 -4.9041 5.1577 23 7 -2.3212 -4.7640 6.2361 24 7 -2.3893 -5.8987 6.8401 25 1 -2.8515 -6.0617 7.6773 26 7 -1.7469 -6.7840 6.1589 27 6 0.4760 -2.6865 1.3207 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2691 -1.8414 -1.1659 30 1 2.5097 -3.9788 -1.0174 31 1 3.1184 -3.4809 0.5965 32 1 0.7115 -5.2631 -0.0697 33 1 2.0153 -5.5598 1.1207 34 1 0.8382 -9.5900 2.7149 35 1 -0.5937 -8.8831 4.6686 36 1 0.9124 -2.0600 2.0986 37 1 -0.5717 -2.4224 1.1767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592674593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:11 Heat of formation + Delta-G solvation = 107.132877 kcal Electronic energy + Delta-G solvation = -26547.243060 eV Core-core repulsion = 22648.814389 eV Total energy + Delta-G solvation = -3898.428671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.17491 -39.49800 -38.12848 -36.76901 -34.32825 -33.97775 -32.80643 -32.15231 -30.49957 -29.63233 -27.88746 -26.19752 -24.82135 -24.21922 -23.01023 -22.43455 -20.59090 -19.52565 -19.29306 -18.50456 -17.55611 -17.15404 -16.89603 -15.85078 -15.62175 -15.33914 -14.97501 -14.47115 -14.12770 -13.92627 -13.49181 -13.45236 -13.10635 -12.88279 -12.74715 -12.38261 -12.16310 -11.88179 -11.73635 -11.43092 -11.22920 -11.06889 -10.98587 -10.83501 -10.76395 -10.68098 -10.50975 -10.44104 -10.12598 -9.35496 -9.11931 -8.81971 -8.65401 -8.50317 -8.31076 -7.81611 -6.28079 -4.36817 0.31966 1.29482 1.36570 1.84506 1.92529 2.42914 2.89214 3.24029 3.30100 3.31574 3.52918 3.70373 3.94324 4.28188 4.37656 4.84846 4.99853 5.06724 5.20504 5.28588 5.50198 5.62098 5.71870 5.76479 5.83007 5.96111 6.00034 6.10740 6.23117 6.46242 6.53273 6.73342 6.85354 6.98937 7.28686 7.37682 7.74591 7.99200 8.17761 8.44987 8.65096 8.78193 9.31894 9.43967 10.79767 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.003845 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.660624 B = 7281.185600 C = 8755.165103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.586 6.586 11 C -0.112 4.112 12 C 0.093 3.907 13 N -0.609 5.609 14 C 0.569 3.431 15 O -0.479 6.479 16 C -0.209 4.209 17 S 0.263 5.737 18 C -0.270 4.270 19 C -0.117 4.117 20 C 0.023 3.977 21 C 0.220 3.780 22 N -0.180 5.180 23 N -0.070 5.070 24 N -0.240 5.240 25 H 0.469 0.531 26 N -0.299 5.299 27 C 0.107 3.893 28 H 0.272 0.728 29 H 0.387 0.613 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.147 0.853 36 H 0.069 0.931 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -17.079 7.338 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.396 6.396 11 C -0.150 4.150 12 C -0.031 4.031 13 N -0.343 5.343 14 C 0.354 3.646 15 O -0.352 6.352 16 C -0.333 4.333 17 S 0.532 5.468 18 C -0.406 4.406 19 C -0.148 4.148 20 C 0.004 3.996 21 C -0.061 4.061 22 N -0.054 5.054 23 N -0.067 5.067 24 N -0.084 5.084 25 H 0.322 0.678 26 N -0.153 5.153 27 C -0.015 4.015 28 H 0.082 0.918 29 H 0.239 0.761 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.187 0.813 35 H 0.164 0.836 36 H 0.087 0.913 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.063 -16.514 6.700 17.821 hybrid contribution -0.856 0.472 1.909 2.145 sum -0.919 -16.042 8.609 18.229 Atomic orbital electron populations 1.69562 1.06014 1.28149 1.49672 1.25057 0.95036 0.99758 0.93283 0.86451 0.79540 0.82067 0.78794 1.19992 1.21062 1.20011 1.21471 0.93690 0.90080 1.52492 0.91497 1.19461 0.85836 0.91987 0.81809 1.86066 1.51411 1.53493 1.48659 1.22739 0.97642 0.94373 1.00290 1.22481 0.94356 0.95494 0.90788 1.48663 1.52353 1.12421 1.20886 1.16627 0.80778 0.84970 0.82221 1.91058 1.42222 1.61399 1.40494 1.25109 1.07930 0.98863 1.01431 1.83673 1.45634 0.92620 1.24903 1.25534 1.06171 1.06410 1.02514 1.19698 1.01256 0.93737 1.00144 1.16469 0.98786 0.92159 0.92155 1.22991 1.00651 0.88724 0.93717 1.77278 1.06873 1.13582 1.07682 1.79177 1.14997 1.08732 1.03746 1.47784 1.35291 1.04133 1.21148 0.67814 1.74830 1.13227 1.20294 1.06922 1.23045 1.01877 0.77042 0.99505 0.91794 0.76093 0.90177 0.90296 0.90866 0.92183 0.81305 0.83577 0.91306 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.63 10.98 55.43 0.61 -23.03 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -13.83 8.11 -34.44 -0.28 -14.11 16 8 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 9 C 0.25 5.90 0.86 -89.94 -0.08 5.82 16 10 O -0.59 -14.47 13.09 -35.23 -0.46 -14.93 16 11 C -0.11 -2.15 6.22 -24.58 -0.15 -2.30 16 12 C 0.09 1.59 5.43 -2.51 -0.01 1.58 16 13 N -0.61 -12.50 3.33 -172.15 -0.57 -13.07 16 14 C 0.57 11.67 7.78 -13.01 -0.10 11.57 16 15 O -0.48 -11.30 12.92 5.16 0.07 -11.24 16 16 C -0.21 -3.43 6.41 -36.48 -0.23 -3.67 16 17 S 0.26 3.07 18.56 -107.50 -2.00 1.08 16 18 C -0.27 -2.69 10.88 29.05 0.32 -2.37 16 19 C -0.12 -1.38 9.96 -41.15 -0.41 -1.79 16 20 C 0.02 0.35 5.90 -105.82 -0.62 -0.27 16 21 C 0.22 3.69 7.93 -156.26 -1.24 2.45 16 22 N -0.18 -3.48 8.40 32.13 0.27 -3.21 16 23 N -0.07 -1.12 13.47 60.35 0.81 -0.31 16 24 N -0.24 -2.78 7.90 60.35 0.48 -2.30 16 25 H 0.47 2.82 8.96 -340.34 -3.05 -0.23 16 26 N -0.30 -4.08 12.34 32.15 0.40 -3.68 16 27 C 0.11 2.55 5.54 -3.07 -0.02 2.53 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 9.92 6.98 45.56 0.32 10.24 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.44 8.03 -51.93 -0.42 1.03 16 32 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 33 H 0.06 0.85 5.22 -30.91 -0.16 0.69 16 34 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.07 1.79 7.82 -51.93 -0.41 1.39 16 37 H 0.07 1.75 8.07 -51.93 -0.42 1.34 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -32.13 325.67 -8.81 -40.94 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.37 Total: 8.35 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.93 Total: 1.21 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 1.99 Total: -45.60 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.39 Total: -26.17 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.00 Total: 1.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.13 -8.81 -40.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.073 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds