Wall clock time and date at job start Tue Mar 31 2020 19:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99853 * 2 1 4 4 H 1.48509 * 109.47201 * 240.00193 * 3 2 1 5 5 H 1.48496 * 109.47520 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47319 * 120.00468 * 3 2 1 7 7 C 1.37867 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00054 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64219 * 56.86218 * 9 7 2 11 11 C 1.55153 * 110.71965 * 180.02562 * 9 7 2 12 12 C 1.54911 * 101.61849 * 154.02392 * 11 9 7 13 13 N 1.47464 * 104.80740 * 323.04000 * 12 11 9 14 14 C 1.34773 * 125.62778 * 204.04645 * 13 12 11 15 15 O 1.21736 * 120.00009 * 174.18566 * 14 13 12 16 16 C 1.46336 * 120.00173 * 354.18352 * 14 13 12 17 17 S 1.75807 * 125.48971 * 5.90507 * 16 14 13 18 18 C 1.70534 * 91.75480 * 179.97438 * 17 16 14 19 19 C 1.33423 * 111.32352 * 359.97438 * 18 17 16 20 20 C 1.37812 * 125.49072 * 185.59160 * 16 14 13 21 21 C 1.48246 * 123.58035 * 0.02562 * 20 16 14 22 22 N 1.34115 * 126.68525 * 6.15014 * 21 20 16 23 23 N 1.28980 * 107.26174 * 179.89642 * 22 21 20 24 24 N 1.28725 * 108.96669 * 0.37342 * 23 22 21 25 25 H 0.97010 * 125.33311 * 179.73483 * 24 23 22 26 26 N 1.28868 * 109.34383 * 359.76558 * 24 23 22 27 27 C 1.47022 * 108.72373 * 24.07119 * 13 12 11 28 28 H 0.97005 * 119.99775 * 0.02562 * 1 2 3 29 29 H 0.96705 * 113.99443 * 303.14240 * 10 9 7 30 30 H 1.09004 * 111.00875 * 272.11609 * 11 9 7 31 31 H 1.08999 * 111.00717 * 35.92869 * 11 9 7 32 32 H 1.08997 * 110.36978 * 81.84671 * 12 11 9 33 33 H 1.09002 * 110.36742 * 204.16779 * 12 11 9 34 34 H 1.08000 * 124.33875 * 180.02562 * 18 17 16 35 35 H 1.08004 * 122.46739 * 180.02562 * 19 18 17 36 36 H 1.09000 * 109.88291 * 239.55386 * 27 13 12 37 37 H 1.09001 * 110.01275 * 118.46356 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 0.3655 -2.5696 -1.1200 11 6 2.2332 -3.7001 -0.0005 12 6 1.3749 -4.8052 0.6641 13 7 0.5905 -4.1032 1.6968 14 6 0.0653 -4.6673 2.8024 15 8 -0.4755 -3.9718 3.6424 16 6 0.1449 -6.1161 2.9929 17 16 1.0147 -7.2359 1.9537 18 6 0.5537 -8.5674 2.9143 19 6 -0.2025 -8.1838 3.9444 20 6 -0.4449 -6.8216 4.0193 21 6 -1.2557 -6.1907 5.0881 22 7 -1.6278 -4.9041 5.1577 23 7 -2.3212 -4.7640 6.2361 24 7 -2.3893 -5.8987 6.8401 25 1 -2.8515 -6.0617 7.6773 26 7 -1.7469 -6.7840 6.1589 27 6 0.4760 -2.6865 1.3207 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2691 -1.8414 -1.1659 30 1 2.5097 -3.9788 -1.0174 31 1 3.1184 -3.4809 0.5965 32 1 0.7115 -5.2631 -0.0697 33 1 2.0153 -5.5598 1.1207 34 1 0.8382 -9.5900 2.7149 35 1 -0.5937 -8.8831 4.6686 36 1 0.9124 -2.0600 2.0986 37 1 -0.5717 -2.4224 1.1767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592674593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:11 Heat of formation + Delta-G solvation = 81.622118 kcal Electronic energy + Delta-G solvation = -26548.349290 eV Core-core repulsion = 22648.814389 eV Total energy + Delta-G solvation = -3899.534900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.33881 -41.02677 -39.42811 -38.25659 -36.08289 -35.18538 -34.14461 -33.93617 -32.02997 -30.92862 -29.55313 -27.65905 -26.37302 -25.45370 -24.41224 -23.62665 -21.93637 -21.28172 -20.41266 -19.59296 -19.16375 -18.85099 -18.06147 -17.31087 -17.02043 -16.81409 -16.57835 -16.12730 -15.40917 -15.21426 -14.90970 -14.77924 -14.69361 -14.45514 -14.14283 -13.74259 -13.54375 -13.38385 -13.17753 -12.98399 -12.86223 -12.69107 -12.35544 -12.31553 -12.24332 -12.17867 -12.01672 -11.86261 -11.58797 -11.12746 -10.68815 -10.60303 -10.25005 -9.89518 -9.57934 -9.32964 -8.25062 -6.40823 -0.79043 0.18017 0.34454 0.86017 0.92036 1.43916 1.45127 1.52651 1.52790 1.67383 2.02174 2.31248 2.39870 2.82514 3.01641 3.25309 3.57063 3.76132 4.10344 4.15628 4.19756 4.25584 4.36925 4.45941 4.51999 4.57875 4.70806 4.90905 5.04297 5.11494 5.11625 5.19057 5.28872 5.39864 5.53224 5.69132 5.77493 6.05357 6.60973 6.68190 7.20068 7.31038 7.31322 7.40498 8.80994 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.003845 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.660624 B = 7281.185600 C = 8755.165103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.558 4.558 8 H 0.070 0.930 9 C 0.235 3.765 10 O -0.588 6.588 11 C -0.107 4.107 12 C 0.098 3.902 13 N -0.616 5.616 14 C 0.562 3.438 15 O -0.524 6.524 16 C -0.265 4.265 17 S 0.315 5.685 18 C -0.232 4.232 19 C -0.130 4.130 20 C 0.022 3.978 21 C 0.200 3.800 22 N -0.235 5.235 23 N -0.088 5.088 24 N -0.204 5.204 25 H 0.491 0.509 26 N -0.280 5.280 27 C 0.126 3.874 28 H 0.271 0.729 29 H 0.378 0.622 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.216 0.784 35 H 0.169 0.831 36 H 0.032 0.968 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -20.683 7.315 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.194 3.806 10 O -0.397 6.397 11 C -0.145 4.145 12 C -0.025 4.025 13 N -0.351 5.351 14 C 0.350 3.650 15 O -0.400 6.400 16 C -0.389 4.389 17 S 0.584 5.416 18 C -0.369 4.369 19 C -0.160 4.160 20 C 0.002 3.998 21 C -0.081 4.081 22 N -0.108 5.108 23 N -0.084 5.084 24 N -0.054 5.054 25 H 0.350 0.650 26 N -0.135 5.135 27 C 0.003 3.997 28 H 0.080 0.920 29 H 0.229 0.771 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.233 0.767 35 H 0.186 0.814 36 H 0.051 0.949 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.437 -20.143 6.672 21.268 hybrid contribution -1.372 1.431 2.036 2.842 sum 0.065 -18.711 8.708 20.639 Atomic orbital electron populations 1.69679 1.07170 1.28576 1.50323 1.25804 0.95751 1.02815 0.93066 0.85531 0.78349 0.78411 0.78899 1.18982 1.21093 1.19984 1.21847 0.94091 0.91325 1.52350 0.91166 1.19673 0.86330 0.93549 0.80998 1.86051 1.51411 1.53038 1.49163 1.22740 0.96991 0.92868 1.01895 1.22615 0.94297 0.95362 0.90249 1.48677 1.53315 1.11122 1.21982 1.17267 0.79534 0.86937 0.81225 1.91028 1.43842 1.63248 1.41856 1.24724 1.12247 0.97262 1.04651 1.83244 1.43607 0.91474 1.23240 1.26026 1.03057 1.07704 1.00073 1.19841 1.02334 0.92148 1.01641 1.16892 0.97899 0.93735 0.91281 1.23417 1.01485 0.88280 0.94968 1.77270 1.08643 1.15626 1.09213 1.79093 1.15535 1.09977 1.03822 1.47846 1.33436 1.02917 1.21166 0.65001 1.74790 1.12681 1.19902 1.06081 1.22507 0.99144 0.79184 0.98909 0.92002 0.77077 0.88288 0.89534 0.89752 0.88619 0.76715 0.81374 0.94907 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.66 10.98 21.44 0.24 -50.42 16 2 C 0.03 1.39 5.28 84.65 0.45 1.84 16 3 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.56 -29.28 8.11 25.60 0.21 -29.07 16 8 H 0.07 3.54 7.76 -2.91 -0.02 3.52 16 9 C 0.24 11.39 0.86 -10.35 -0.01 11.39 16 10 O -0.59 -29.78 13.09 -148.98 -1.95 -31.73 16 11 C -0.11 -3.99 6.22 31.99 0.20 -3.79 16 12 C 0.10 3.21 5.43 86.85 0.47 3.68 16 13 N -0.62 -26.13 3.33 -816.76 -2.72 -28.85 16 14 C 0.56 24.02 7.78 86.35 0.67 24.70 16 15 O -0.52 -26.53 12.92 -4.46 -0.06 -26.59 16 16 C -0.26 -8.53 6.41 24.28 0.16 -8.38 16 17 S 0.32 6.19 18.56 -56.49 -1.05 5.14 16 18 C -0.23 -3.37 10.88 66.73 0.73 -2.65 16 19 C -0.13 -2.58 9.96 21.26 0.21 -2.37 16 20 C 0.02 0.66 5.90 -20.64 -0.12 0.54 16 21 C 0.20 6.69 7.93 137.26 1.09 7.78 16 22 N -0.23 -9.49 8.40 -52.26 -0.44 -9.93 16 23 N -0.09 -2.91 13.47 37.02 0.50 -2.41 16 24 N -0.20 -4.56 7.90 37.02 0.29 -4.27 16 25 H 0.49 5.13 8.96 -347.51 -3.12 2.02 16 26 N -0.28 -7.28 12.34 -52.21 -0.64 -7.93 16 27 C 0.13 6.40 5.54 86.73 0.48 6.88 16 28 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 29 H 0.38 20.34 6.98 -74.05 -0.52 19.83 16 30 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 31 H 0.09 3.06 8.03 -2.39 -0.02 3.04 16 32 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 33 H 0.10 2.43 5.22 -15.75 -0.08 2.34 16 34 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 36 H 0.03 1.85 7.82 -2.39 -0.02 1.83 16 37 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 Total: -1.00 -76.29 325.67 -1.80 -78.10 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -2.53 Total: 23.89 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 4.53 Total: 10.55 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -2.77 Total: -103.80 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -2.01 Total: -58.32 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.05 Total: 5.14 kcal Total: -76.29 -1.80 -78.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.720 kcal (2) G-P(sol) polarization free energy of solvation -76.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds