Wall clock time and date at job start Tue Mar 31 2020 19:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34172 * 125.42401 * 2 1 4 4 C 1.47031 * 105.95741 * 179.97438 * 3 2 1 5 5 C 1.47303 * 127.19643 * 180.02562 * 4 3 2 6 6 O 1.21645 * 119.99727 * 174.07668 * 5 4 3 7 7 N 1.34776 * 120.00084 * 354.07453 * 5 4 3 8 8 C 1.36959 * 119.99923 * 175.29157 * 7 5 4 9 9 H 1.08008 * 119.99516 * 203.96112 * 8 7 5 10 10 C 1.38981 * 120.00294 * 23.95132 * 8 7 5 11 11 N 1.31408 * 119.99873 * 27.83568 * 10 8 7 12 12 Si 1.86802 * 120.00058 * 207.83004 * 10 8 7 13 13 H 1.48500 * 109.46825 * 90.00285 * 12 10 8 14 14 H 1.48493 * 109.46938 * 210.00182 * 12 10 8 15 15 H 1.48491 * 109.47218 * 330.00512 * 12 10 8 16 16 C 1.46503 * 119.99760 * 355.28298 * 7 5 4 17 17 C 1.53007 * 109.46780 * 97.50321 * 16 7 5 18 18 C 1.50694 * 109.47109 * 179.97438 * 17 16 7 19 19 O 1.20821 * 120.00265 * 0.02562 * 18 17 16 20 20 O 1.34232 * 120.00053 * 179.97438 * 18 17 16 21 21 C 1.36501 * 105.60637 * 0.02562 * 4 3 2 22 22 C 1.50697 * 125.80814 * 180.02562 * 21 4 3 23 23 F 1.39894 * 109.47422 * 90.00077 * 22 21 4 24 24 F 1.39900 * 109.47058 * 210.00093 * 22 21 4 25 25 F 1.39899 * 109.47412 * 330.00002 * 22 21 4 26 26 O 1.33673 * 108.37818 * 359.77137 * 21 4 3 27 27 H 1.08999 * 109.47089 * 90.00121 * 1 2 3 28 28 H 1.08996 * 109.47337 * 329.99720 * 1 2 3 29 29 H 1.08999 * 109.46876 * 210.00118 * 1 2 3 30 30 H 1.07997 * 127.02431 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99702 * 184.95006 * 11 10 8 32 32 H 1.08994 * 109.47071 * 217.49976 * 16 7 5 33 33 H 1.08994 * 109.47744 * 337.50741 * 16 7 5 34 34 H 1.09000 * 109.47418 * 300.00263 * 17 16 7 35 35 H 1.09004 * 109.46767 * 59.99815 * 17 16 7 36 36 H 0.96696 * 117.00119 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0933 0.0000 4 6 3.6710 0.6034 0.0006 5 6 4.9016 1.4129 0.0014 6 8 5.9855 0.8716 0.1106 7 7 4.8267 2.7532 -0.1189 8 6 5.9614 3.5139 -0.0216 9 1 5.8922 4.5520 0.2686 10 6 7.2017 2.9502 -0.2959 11 7 7.2943 1.9417 -1.1333 12 14 8.7372 3.6261 0.5256 13 1 8.9711 2.9083 1.8044 14 1 9.9045 3.4325 -0.3715 15 1 8.5564 5.0748 0.7971 16 6 3.5315 3.3962 -0.3540 17 6 2.9658 3.9042 0.9738 18 6 1.6339 4.5662 0.7320 19 8 1.1829 4.6252 -0.3874 20 8 0.9479 5.0894 1.7603 21 6 3.5791 -0.7586 0.0004 22 6 4.7391 -1.7205 0.0013 23 9 5.0968 -2.0184 1.3206 24 9 4.3695 -2.8974 -0.6587 25 9 5.8278 -1.1389 -0.6570 26 8 2.2850 -1.0937 0.0047 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 0.8899 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9590 2.1230 -0.0004 31 1 8.1480 1.5019 -1.2703 32 1 3.6610 4.2346 -1.0382 33 1 2.8412 2.6743 -0.7904 34 1 2.8364 3.0657 1.6582 35 1 3.6561 4.6261 1.4103 36 1 0.0986 5.5040 1.5559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600077971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:24 Heat of formation + Delta-G solvation = -201.111146 kcal Electronic energy + Delta-G solvation = -30858.773466 eV Core-core repulsion = 25897.783218 eV Total energy + Delta-G solvation = -4960.990248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.50896 -47.14336 -46.82871 -42.31993 -40.25410 -38.36002 -36.18827 -34.75332 -33.28221 -32.44137 -31.49847 -30.32649 -28.10312 -25.63593 -24.83159 -23.74453 -22.20225 -21.36794 -20.79444 -19.01149 -18.15664 -18.00907 -17.88615 -17.57172 -16.72814 -16.65426 -15.98773 -15.92592 -15.46120 -14.84098 -14.43580 -14.06862 -13.93813 -13.90651 -13.68796 -13.61184 -13.45494 -13.10978 -13.06213 -13.04597 -12.99748 -12.84867 -12.62309 -12.14136 -11.92007 -11.69673 -11.55830 -11.49602 -11.29917 -10.92995 -10.65681 -10.54907 -10.45998 -10.20805 -9.31429 -9.21337 -8.43656 -8.21186 -7.04208 -6.07502 -3.86058 1.51702 2.24745 2.35664 2.41034 3.07057 3.31569 3.37247 3.40824 3.47378 4.21465 4.25767 4.58556 4.76949 4.79045 4.92373 4.99048 5.09980 5.21948 5.28421 5.31312 5.36841 5.40019 5.56762 5.60868 5.67518 5.82977 5.95518 6.11115 6.18167 6.41806 6.54790 6.57778 7.18825 7.38687 7.90900 8.00146 8.79991 9.01172 9.47525 10.20913 10.80442 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.007952 B = 0.007804 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.145842 B = 3587.147440 C = 6641.688571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.015 3.985 3 C -0.234 4.234 4 C -0.092 4.092 5 C 0.449 3.551 6 O -0.487 6.487 7 N -0.422 5.422 8 C -0.324 4.324 9 H 0.093 0.907 10 C 0.038 3.962 11 N -0.744 5.744 12 Si 0.911 3.089 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.275 1.275 16 C 0.086 3.914 17 C -0.137 4.137 18 C 0.481 3.519 19 O -0.517 6.517 20 O -0.519 6.519 21 C -0.109 4.109 22 C 0.561 3.439 23 F -0.174 7.174 24 F -0.186 7.186 25 F -0.118 7.118 26 O -0.162 6.162 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.178 0.822 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 -0.335 3.601 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.035 4.035 3 C -0.253 4.253 4 C -0.098 4.098 5 C 0.239 3.761 6 O -0.363 6.363 7 N -0.140 5.140 8 C -0.450 4.450 9 H 0.110 0.890 10 C -0.177 4.177 11 N -0.380 5.380 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.214 1.214 15 H -0.200 1.200 16 C -0.038 4.038 17 C -0.176 4.176 18 C 0.324 3.676 19 O -0.406 6.406 20 O -0.330 6.330 21 C -0.161 4.161 22 C 0.506 3.494 23 F -0.155 7.155 24 F -0.168 7.168 25 F -0.098 7.098 26 O -0.059 6.059 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.195 0.805 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -12.297 -1.195 3.291 12.786 hybrid contribution 0.189 0.607 0.253 0.684 sum -12.108 -0.588 3.544 12.630 Atomic orbital electron populations 1.20367 0.84592 1.04136 1.03883 1.22501 0.93909 0.83984 1.03089 1.23577 0.91259 1.00012 1.10453 1.22180 0.95672 0.91933 1.00021 1.16597 0.86062 0.81978 0.91460 1.90775 1.26367 1.70103 1.49020 1.43209 1.04745 1.04758 1.61330 1.19385 0.83538 0.96126 1.45959 0.88951 1.24911 0.98545 0.97428 0.96767 1.70200 1.25779 1.17514 1.24487 0.86187 0.81674 0.78664 0.79657 1.20550 1.21385 1.19959 1.22100 0.88302 0.99910 0.93512 1.22050 0.90168 1.02202 1.03204 1.23753 0.86893 0.74947 0.82021 1.90721 1.69556 1.55621 1.24666 1.84595 1.37129 1.70024 1.41301 1.21765 0.82749 0.93583 1.18048 1.16678 0.81337 0.76845 0.74535 1.93203 1.92605 1.93368 1.36348 1.93169 1.91766 1.50527 1.81319 1.93504 1.53271 1.83017 1.80032 1.83555 1.14658 1.35109 1.72614 0.89654 0.89174 0.90289 0.80522 0.92238 0.90330 0.88094 0.87434 0.86651 0.73698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.40 36.01 0.37 -0.34 16 2 C 0.02 0.23 7.28 -35.74 -0.26 -0.03 16 3 C -0.23 -4.00 8.13 -37.45 -0.30 -4.30 16 4 C -0.09 -1.98 6.06 -103.28 -0.63 -2.61 16 5 C 0.45 11.34 7.12 -12.57 -0.09 11.25 16 6 O -0.49 -13.85 9.25 5.24 0.05 -13.80 16 7 N -0.42 -9.98 2.63 -116.06 -0.30 -10.28 16 8 C -0.32 -8.22 9.48 -14.99 -0.14 -8.36 16 9 H 0.09 2.17 7.97 -52.48 -0.42 1.75 16 10 C 0.04 1.01 4.29 -17.46 -0.07 0.93 16 11 N -0.74 -21.24 10.33 55.50 0.57 -20.66 16 12 Si 0.91 20.88 29.64 -169.99 -5.04 15.84 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 16 C 0.09 1.60 4.15 -4.04 -0.02 1.59 16 17 C -0.14 -2.04 5.20 -27.88 -0.14 -2.18 16 18 C 0.48 6.29 7.76 36.00 0.28 6.57 16 19 O -0.52 -7.93 16.64 -18.75 -0.31 -8.24 16 20 O -0.52 -5.22 13.42 -39.26 -0.53 -5.74 16 21 C -0.11 -2.25 6.70 -34.94 -0.23 -2.49 16 22 C 0.56 11.75 3.31 36.00 0.12 11.86 16 23 F -0.17 -3.58 17.30 2.25 0.04 -3.54 16 24 F -0.19 -3.52 17.29 2.25 0.04 -3.48 16 25 F -0.12 -2.84 13.63 2.25 0.03 -2.81 16 26 O -0.16 -2.91 10.51 7.60 0.08 -2.83 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.18 2.73 3.46 -52.49 -0.18 2.55 16 31 H 0.27 7.39 8.32 -40.82 -0.34 7.06 16 32 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 33 H 0.10 1.84 3.68 -51.93 -0.19 1.65 16 34 H 0.11 1.56 7.36 -51.93 -0.38 1.18 16 35 H 0.12 1.68 8.14 -51.93 -0.42 1.25 16 36 H 0.40 2.19 9.10 45.56 0.41 2.61 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -33.22 322.35 -3.64 -36.85 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -2.00 Total: 1.94 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -1.12 Total: 11.90 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.27 Total: -30.94 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.71 Total: -30.61 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 0.11 Total: -9.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.04 Total: 15.84 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.22 -3.64 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600077971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.257 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds