Wall clock time and date at job start Tue Mar 31 2020 19:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34172 * 125.42401 * 2 1 4 4 C 1.47031 * 105.95741 * 179.97438 * 3 2 1 5 5 C 1.47303 * 127.19643 * 180.02562 * 4 3 2 6 6 O 1.21645 * 119.99727 * 174.07668 * 5 4 3 7 7 N 1.34776 * 120.00084 * 354.07453 * 5 4 3 8 8 C 1.36959 * 119.99923 * 175.29157 * 7 5 4 9 9 H 1.08008 * 119.99516 * 203.96112 * 8 7 5 10 10 C 1.38981 * 120.00294 * 23.95132 * 8 7 5 11 11 N 1.31408 * 119.99873 * 27.83568 * 10 8 7 12 12 Si 1.86802 * 120.00058 * 207.83004 * 10 8 7 13 13 H 1.48500 * 109.46825 * 90.00285 * 12 10 8 14 14 H 1.48493 * 109.46938 * 210.00182 * 12 10 8 15 15 H 1.48491 * 109.47218 * 330.00512 * 12 10 8 16 16 C 1.46503 * 119.99760 * 355.28298 * 7 5 4 17 17 C 1.53007 * 109.46780 * 97.50321 * 16 7 5 18 18 C 1.50694 * 109.47109 * 179.97438 * 17 16 7 19 19 O 1.20821 * 120.00265 * 0.02562 * 18 17 16 20 20 O 1.34232 * 120.00053 * 179.97438 * 18 17 16 21 21 C 1.36501 * 105.60637 * 0.02562 * 4 3 2 22 22 C 1.50697 * 125.80814 * 180.02562 * 21 4 3 23 23 F 1.39894 * 109.47422 * 90.00077 * 22 21 4 24 24 F 1.39900 * 109.47058 * 210.00093 * 22 21 4 25 25 F 1.39899 * 109.47412 * 330.00002 * 22 21 4 26 26 O 1.33673 * 108.37818 * 359.77137 * 21 4 3 27 27 H 1.08999 * 109.47089 * 90.00121 * 1 2 3 28 28 H 1.08996 * 109.47337 * 329.99720 * 1 2 3 29 29 H 1.08999 * 109.46876 * 210.00118 * 1 2 3 30 30 H 1.07997 * 127.02431 * 359.97438 * 3 2 1 31 31 H 0.97001 * 119.99702 * 184.95006 * 11 10 8 32 32 H 1.08994 * 109.47071 * 217.49976 * 16 7 5 33 33 H 1.08994 * 109.47744 * 337.50741 * 16 7 5 34 34 H 1.09000 * 109.47418 * 300.00263 * 17 16 7 35 35 H 1.09004 * 109.46767 * 59.99815 * 17 16 7 36 36 H 0.96696 * 117.00119 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2847 1.0933 0.0000 4 6 3.6710 0.6034 0.0006 5 6 4.9016 1.4129 0.0014 6 8 5.9855 0.8716 0.1106 7 7 4.8267 2.7532 -0.1189 8 6 5.9614 3.5139 -0.0216 9 1 5.8922 4.5520 0.2686 10 6 7.2017 2.9502 -0.2959 11 7 7.2943 1.9417 -1.1333 12 14 8.7372 3.6261 0.5256 13 1 8.9711 2.9083 1.8044 14 1 9.9045 3.4325 -0.3715 15 1 8.5564 5.0748 0.7971 16 6 3.5315 3.3962 -0.3540 17 6 2.9658 3.9042 0.9738 18 6 1.6339 4.5662 0.7320 19 8 1.1829 4.6252 -0.3874 20 8 0.9479 5.0894 1.7603 21 6 3.5791 -0.7586 0.0004 22 6 4.7391 -1.7205 0.0013 23 9 5.0968 -2.0184 1.3206 24 9 4.3695 -2.8974 -0.6587 25 9 5.8278 -1.1389 -0.6570 26 8 2.2850 -1.0937 0.0047 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 0.8899 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9590 2.1230 -0.0004 31 1 8.1480 1.5019 -1.2703 32 1 3.6610 4.2346 -1.0382 33 1 2.8412 2.6743 -0.7904 34 1 2.8364 3.0657 1.6582 35 1 3.6561 4.6261 1.4103 36 1 0.0986 5.5040 1.5559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600077971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:23 Heat of formation + Delta-G solvation = -223.392787 kcal Electronic energy + Delta-G solvation = -30859.739670 eV Core-core repulsion = 25897.783218 eV Total energy + Delta-G solvation = -4961.956453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.18021 -48.77005 -48.58357 -43.76622 -41.32934 -40.08262 -37.20577 -36.40721 -34.93775 -33.78087 -33.10850 -31.85970 -29.40720 -27.40541 -26.27641 -25.22582 -23.78749 -22.89215 -21.94835 -20.59326 -19.69517 -19.59177 -19.28446 -19.11973 -18.30427 -17.97854 -17.39683 -17.10610 -16.86088 -16.59173 -15.90382 -15.83058 -15.58025 -15.52573 -15.24567 -15.13761 -15.09264 -14.77783 -14.73019 -14.31435 -14.12953 -13.91634 -13.80165 -13.68659 -13.40338 -13.21338 -13.11495 -12.78602 -12.77366 -12.50619 -12.44311 -12.06219 -11.86138 -11.61923 -11.19787 -10.74944 -10.09814 -9.82567 -8.99583 -8.04333 -5.84999 -0.01908 0.90055 0.98840 1.22301 1.45861 1.53673 1.57728 1.92113 2.04395 2.42435 2.73240 2.81087 3.08301 3.24046 3.27109 3.30838 3.64978 3.85484 3.92366 3.98224 4.18024 4.29983 4.47351 4.53972 4.61649 4.69093 4.71553 4.79524 4.96503 5.08908 5.31475 5.43264 5.65048 5.78620 6.05912 6.88184 7.05770 7.15980 7.58660 8.34261 8.83578 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.007952 B = 0.007804 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3520.145842 B = 3587.147440 C = 6641.688571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.041 3.959 3 C -0.242 4.242 4 C -0.116 4.116 5 C 0.437 3.563 6 O -0.528 6.528 7 N -0.432 5.432 8 C -0.339 4.339 9 H 0.108 0.892 10 C -0.009 4.009 11 N -0.788 5.788 12 Si 0.969 3.031 13 H -0.294 1.294 14 H -0.292 1.292 15 H -0.250 1.250 16 C 0.086 3.914 17 C -0.130 4.130 18 C 0.499 3.501 19 O -0.540 6.540 20 O -0.508 6.508 21 C -0.120 4.120 22 C 0.560 3.440 23 F -0.175 7.175 24 F -0.175 7.175 25 F -0.142 7.142 26 O -0.159 6.159 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.195 0.805 31 H 0.257 0.743 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 0.658 4.643 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.009 4.009 3 C -0.260 4.260 4 C -0.122 4.122 5 C 0.227 3.773 6 O -0.406 6.406 7 N -0.151 5.151 8 C -0.466 4.466 9 H 0.126 0.874 10 C -0.219 4.219 11 N -0.425 5.425 12 Si 0.795 3.205 13 H -0.221 1.221 14 H -0.218 1.218 15 H -0.173 1.173 16 C -0.037 4.037 17 C -0.169 4.169 18 C 0.342 3.658 19 O -0.431 6.431 20 O -0.321 6.321 21 C -0.173 4.173 22 C 0.505 3.495 23 F -0.156 7.156 24 F -0.156 7.156 25 F -0.122 7.122 26 O -0.056 6.056 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.211 0.789 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -15.668 -0.151 4.347 16.260 hybrid contribution 0.982 0.255 -0.040 1.015 sum -14.686 0.104 4.307 15.305 Atomic orbital electron populations 1.20753 0.79851 1.06481 1.05912 1.23609 0.95988 0.82387 0.98938 1.23616 0.89065 1.01498 1.11844 1.22053 0.96495 0.92240 1.01387 1.17198 0.86842 0.82726 0.90519 1.90746 1.28302 1.71153 1.50430 1.43363 1.06173 1.04601 1.60922 1.19763 0.84224 0.96937 1.45713 0.87428 1.25760 1.01437 0.97623 0.97082 1.70325 1.25638 1.19798 1.26770 0.85282 0.78384 0.79148 0.77664 1.22125 1.21830 1.17324 1.22192 0.86388 0.99472 0.95670 1.21761 0.91626 1.02721 1.00781 1.23074 0.86187 0.74578 0.81945 1.90732 1.70036 1.56691 1.25638 1.84516 1.38428 1.69497 1.39706 1.21609 0.83729 0.93163 1.18793 1.16723 0.81104 0.77306 0.74370 1.93190 1.92678 1.93397 1.36327 1.93181 1.91544 1.49792 1.81075 1.93456 1.54686 1.83569 1.80534 1.83599 1.13551 1.36229 1.72257 0.87525 0.86543 0.88217 0.78871 0.93350 0.90976 0.87628 0.86915 0.86309 0.70825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.40 71.24 0.74 -0.30 16 2 C 0.04 1.11 7.28 24.76 0.18 1.29 16 3 C -0.24 -7.76 8.13 23.65 0.19 -7.57 16 4 C -0.12 -5.00 6.06 -18.99 -0.12 -5.12 16 5 C 0.44 22.71 7.12 86.63 0.62 23.33 16 6 O -0.53 -31.43 9.25 -4.17 -0.04 -31.47 16 7 N -0.43 -20.78 2.63 -639.36 -1.68 -22.46 16 8 C -0.34 -17.50 9.48 84.07 0.80 -16.71 16 9 H 0.11 5.03 7.97 -2.91 -0.02 5.01 16 10 C -0.01 -0.48 4.29 84.93 0.36 -0.12 16 11 N -0.79 -47.25 10.33 21.67 0.22 -47.02 16 12 Si 0.97 44.10 29.64 68.60 2.03 46.13 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 15 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 16 C 0.09 3.14 4.15 86.38 0.36 3.50 16 17 C -0.13 -3.61 5.20 29.85 0.16 -3.46 16 18 C 0.50 11.48 7.76 71.23 0.55 12.03 16 19 O -0.54 -15.01 16.64 21.98 0.37 -14.65 16 20 O -0.51 -8.12 13.42 -51.44 -0.69 -8.81 16 21 C -0.12 -4.97 6.70 25.28 0.17 -4.80 16 22 C 0.56 23.98 3.31 71.23 0.24 24.22 16 23 F -0.17 -7.36 17.30 44.97 0.78 -6.58 16 24 F -0.17 -6.63 17.29 44.97 0.78 -5.85 16 25 F -0.14 -7.20 13.63 44.97 0.61 -6.59 16 26 O -0.16 -5.39 10.51 4.26 0.04 -5.35 16 27 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.19 5.46 3.46 -2.91 -0.01 5.45 16 31 H 0.26 15.13 8.32 -92.71 -0.77 14.36 16 32 H 0.07 2.69 8.06 -2.39 -0.02 2.67 16 33 H 0.11 3.74 3.68 -2.39 -0.01 3.73 16 34 H 0.11 3.04 7.36 -2.39 -0.02 3.02 16 35 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.43 2.70 9.10 -74.06 -0.67 2.02 16 Total: -1.00 -76.01 322.35 7.19 -68.82 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.52 Total: 7.53 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: 4.25 Total: 26.30 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -1.46 Total: -69.48 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -0.32 Total: -60.28 kcal Atomic # 9 Polarization: -21.18 SS G_CDS: 2.17 Total: -19.01 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -76.01 7.19 -68.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600077971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.575 kcal (2) G-P(sol) polarization free energy of solvation -76.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds