Wall clock time and date at job start Tue Mar 31 2020 18:27:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.35229 * 126.06811 * 2 1
4 4 C 1.40424 * 107.86723 * 179.85071 * 3 2 1
5 5 N 1.40069 * 125.97691 * 180.16552 * 4 3 2
6 6 C 1.34775 * 120.00236 * 0.27234 * 5 4 3
7 7 O 1.21601 * 119.99615 * 359.97438 * 6 5 4
8 8 C 1.47591 * 120.00262 * 180.02562 * 6 5 4
9 9 C 1.38739 * 123.63238 * 37.87265 * 8 6 5
10 10 C 1.33384 * 115.05806 * 179.76852 * 9 8 6
11 11 S 1.70515 * 111.40578 * 0.48878 * 10 9 8
12 12 C 1.38154 * 123.62965 * 218.16615 * 8 6 5
13 13 C 1.46786 * 125.50178 * 359.97438 * 12 8 6
14 14 O 1.21566 * 119.99751 * 6.12752 * 13 12 8
15 15 O 1.34862 * 119.99714 * 186.13414 * 13 12 8
16 16 N 1.31239 * 108.04710 * 0.41511 * 4 3 2
17 17 N 1.34974 * 126.06301 * 180.31111 * 2 1 3
18 18 C 1.46495 * 125.97582 * 359.97438 * 17 2 1
19 19 C 1.50701 * 109.47109 * 90.00444 * 18 17 2
20 20 H 1.08000 * 120.00074 * 359.97438 * 19 18 17
21 21 C 1.37875 * 119.99981 * 180.02562 * 19 18 17
22 22 N 1.31519 * 120.00106 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 120.00099 * 179.97438 * 21 19 18
24 24 H 1.48504 * 109.46774 * 359.97438 * 23 21 19
25 25 H 1.48497 * 109.47276 * 119.99624 * 23 21 19
26 26 H 1.48505 * 109.47166 * 239.99987 * 23 21 19
27 27 H 1.09007 * 109.46904 * 269.69253 * 1 2 3
28 28 H 1.08997 * 109.47229 * 149.69424 * 1 2 3
29 29 H 1.08996 * 109.47080 * 29.69069 * 1 2 3
30 30 H 1.07999 * 126.06348 * 0.02562 * 3 2 1
31 31 H 0.96999 * 120.00026 * 180.26619 * 5 4 3
32 32 H 1.08002 * 122.47198 * 359.97438 * 9 8 6
33 33 H 1.08000 * 124.29494 * 180.18658 * 10 9 8
34 34 H 0.96702 * 116.99735 * 180.02562 * 15 13 12
35 35 H 1.08998 * 109.46972 * 209.99945 * 18 17 2
36 36 H 1.09001 * 109.47324 * 329.99778 * 18 17 2
37 37 H 0.96996 * 119.99632 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3032 1.0931 0.0000
4 6 3.6372 0.6545 0.0035
5 7 4.7729 1.4743 0.0079
6 6 4.6362 2.8150 0.0147
7 8 3.5269 3.3130 0.0165
8 6 5.8329 3.6789 0.0187
9 6 6.9895 3.3928 -0.6921
10 6 7.9654 4.2939 -0.5696
11 16 7.5076 5.5702 0.4643
12 6 5.9241 4.8564 0.7355
13 6 4.8690 5.4207 1.5857
14 8 3.8511 4.7888 1.7912
15 8 5.0289 6.6404 2.1386
16 7 3.6337 -0.6579 -0.0036
17 7 2.3016 -1.0911 -0.0059
18 6 1.8499 -2.4846 -0.0130
19 6 1.6945 -2.9552 -1.4362
20 1 1.9103 -2.2832 -2.2537
21 6 1.2760 -4.2432 -1.6946
22 7 1.0127 -5.0613 -0.6991
23 14 1.0827 -4.8262 -3.4587
24 1 1.4382 -3.7225 -4.3865
25 1 1.9812 -5.9839 -3.6987
26 1 -0.3254 -5.2354 -3.6934
27 1 -0.3633 -0.0055 1.0277
28 1 -0.3633 -0.8872 -0.5186
29 1 -0.3633 0.8927 -0.5090
30 1 1.9718 2.1210 0.0004
31 1 5.6578 1.0770 0.0062
32 1 7.0910 2.5076 -1.3025
33 1 8.9254 4.2215 -1.0590
34 1 4.3070 6.9699 2.6912
35 1 2.5846 -3.1073 0.4974
36 1 0.8914 -2.5585 0.5009
37 1 0.7186 -5.9675 -0.8810
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001600277127.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:27:13
Heat of formation + Delta-G solvation = -3.573060 kcal
Electronic energy + Delta-G solvation = -25385.345195 eV
Core-core repulsion = 21449.823203 eV
Total energy + Delta-G solvation = -3935.521992 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.077 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.89099 -40.31130 -39.37234 -37.43179 -36.18341 -34.78522 -33.34475 -31.41309
-30.87538 -30.57121 -27.32366 -26.34448 -26.08073 -23.35748 -22.81714 -22.19153
-20.22039 -19.72103 -19.20448 -18.58265 -17.72710 -16.68474 -16.61638 -16.16914
-15.84396 -15.72265 -15.28477 -15.04818 -14.86035 -14.29477 -13.97809 -13.77645
-13.43046 -13.30388 -12.97887 -12.79916 -12.46191 -12.28428 -12.09361 -11.74822
-11.65204 -11.53229 -11.38738 -11.07922 -10.87698 -10.81964 -10.36865 -10.23472
-9.91318 -9.58591 -9.48208 -9.43910 -9.08687 -8.63808 -7.89161 -7.40958
-6.24398 -4.31958 -0.22013 0.87242 1.33682 1.58771 2.36220 2.62386
2.69457 2.85925 3.07018 3.20935 3.28815 3.35235 3.79363 3.87893
4.31061 4.42279 4.66444 4.71328 4.96742 5.09174 5.34761 5.50028
5.55593 5.63818 5.76267 5.98905 6.14485 6.21142 6.27860 6.51564
6.61225 6.76361 6.96732 7.07849 7.46909 7.63643 7.67845 7.70198
7.90536 8.08743 8.27649 8.67916 8.77417 9.34423 10.82842
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.021776 B = 0.002561 C = 0.002375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.498257 B =10929.603527 C =11784.477683
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C 0.091 3.909
3 C -0.286 4.286
4 C 0.266 3.734
5 N -0.623 5.623
6 C 0.571 3.429
7 O -0.470 6.470
8 C -0.056 4.056
9 C -0.130 4.130
10 C -0.235 4.235
11 S 0.283 5.717
12 C -0.213 4.213
13 C 0.539 3.461
14 O -0.454 6.454
15 O -0.518 6.518
16 N -0.320 5.320
17 N -0.317 5.317
18 C 0.258 3.742
19 C -0.535 4.535
20 H 0.065 0.935
21 C 0.065 3.935
22 N -0.892 5.892
23 Si 0.906 3.094
24 H -0.271 1.271
25 H -0.281 1.281
26 H -0.281 1.281
27 H 0.070 0.930
28 H 0.082 0.918
29 H 0.075 0.925
30 H 0.160 0.840
31 H 0.410 0.590
32 H 0.157 0.843
33 H 0.179 0.821
34 H 0.419 0.581
35 H 0.052 0.948
36 H 0.054 0.946
37 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.337 22.456 3.551 26.358
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.040 4.040
3 C -0.317 4.317
4 C 0.013 3.987
5 N -0.271 5.271
6 C 0.353 3.647
7 O -0.341 6.341
8 C -0.076 4.076
9 C -0.159 4.159
10 C -0.373 4.373
11 S 0.553 5.447
12 C -0.333 4.333
13 C 0.378 3.622
14 O -0.339 6.339
15 O -0.332 6.332
16 N -0.151 5.151
17 N -0.099 5.099
18 C 0.140 3.860
19 C -0.573 4.573
20 H 0.083 0.917
21 C -0.138 4.138
22 N -0.530 5.530
23 Si 0.733 3.267
24 H -0.196 1.196
25 H -0.207 1.207
26 H -0.206 1.206
27 H 0.089 0.911
28 H 0.101 0.899
29 H 0.094 0.906
30 H 0.177 0.823
31 H 0.245 0.755
32 H 0.175 0.825
33 H 0.197 0.803
34 H 0.279 0.721
35 H 0.070 0.930
36 H 0.072 0.928
37 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 13.943 22.476 3.911 26.737
hybrid contribution -1.032 -1.206 -1.207 1.995
sum 12.911 21.270 2.703 25.028
Atomic orbital electron populations
1.20376 0.87917 1.03831 1.02540 1.21054 0.94918 0.87098 1.00937
1.21269 0.89703 0.99885 1.20880 1.18891 0.87026 0.89524 1.03251
1.42206 1.07676 1.04545 1.72710 1.17405 0.88174 0.80997 0.78135
1.90823 1.24906 1.73496 1.44842 1.19371 0.95430 0.94388 0.98367
1.20046 0.91130 1.02297 1.02463 1.25362 1.05258 1.00527 1.06137
1.83212 1.03056 1.20523 1.37904 1.23758 1.00287 1.01028 1.08267
1.19270 0.85134 0.79498 0.78265 1.91138 1.27176 1.59693 1.55897
1.84517 1.51324 1.33923 1.63450 1.77250 0.99986 1.08360 1.29481
1.48982 1.00930 1.07763 1.52236 1.19690 0.95990 0.71358 0.98920
1.21374 1.46592 0.97970 0.91407 0.91668 1.24934 0.94712 0.96062
0.98127 1.69933 1.45030 1.06942 1.31077 0.86306 0.77865 0.78773
0.83774 1.19566 1.20672 1.20647 0.91085 0.89924 0.90618 0.82270
0.75504 0.82523 0.80335 0.72144 0.93000 0.92782 0.92323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.57 9.89 36.01 0.36 -1.22 16
2 C 0.09 2.00 6.92 -82.28 -0.57 1.43 16
3 C -0.29 -6.21 9.52 -39.83 -0.38 -6.59 16
4 C 0.27 5.63 8.11 -154.45 -1.25 4.38 16
5 N -0.62 -10.33 5.41 -12.06 -0.07 -10.40 16
6 C 0.57 9.28 7.04 -12.45 -0.09 9.19 16
7 O -0.47 -9.25 11.38 -18.56 -0.21 -9.46 16
8 C -0.06 -0.67 5.75 -105.93 -0.61 -1.28 16
9 C -0.13 -1.10 9.64 -41.09 -0.40 -1.49 16
10 C -0.24 -1.43 10.87 29.04 0.32 -1.11 16
11 S 0.28 1.87 22.92 -107.50 -2.46 -0.59 16
12 C -0.21 -2.36 6.50 -36.16 -0.23 -2.59 16
13 C 0.54 6.61 8.25 34.19 0.28 6.89 16
14 O -0.45 -7.51 14.40 -27.25 -0.39 -7.90 16
15 O -0.52 -4.20 13.30 -40.94 -0.54 -4.74 16
16 N -0.32 -7.56 12.59 31.43 0.40 -7.16 16
17 N -0.32 -7.69 3.59 -58.33 -0.21 -7.90 16
18 C 0.26 6.71 5.81 -5.20 -0.03 6.68 16
19 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16
20 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16
21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16
22 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16
23 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16
24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16
25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
28 H 0.08 1.56 7.71 -51.93 -0.40 1.15 16
29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
30 H 0.16 3.43 5.91 -52.49 -0.31 3.12 16
31 H 0.41 5.42 8.51 -40.82 -0.35 5.07 16
32 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16
33 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16
34 H 0.42 1.61 9.11 45.56 0.42 2.02 16
35 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16
36 H 0.05 1.39 7.65 -51.93 -0.40 0.99 16
37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16
LS Contribution 346.42 15.07 5.22 5.22
Total: -1.00 -36.41 346.42 -8.28 -44.69
By element:
Atomic # 1 Polarization: 8.43 SS G_CDS: -2.70 Total: 5.73 kcal
Atomic # 6 Polarization: 3.83 SS G_CDS: -3.03 Total: 0.80 kcal
Atomic # 7 Polarization: -50.78 SS G_CDS: 0.86 Total: -49.93 kcal
Atomic # 8 Polarization: -20.96 SS G_CDS: -1.15 Total: -22.11 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal
Atomic # 16 Polarization: 1.87 SS G_CDS: -2.46 Total: -0.59 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -36.41 -8.28 -44.69 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001600277127.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.118 kcal
(2) G-P(sol) polarization free energy of solvation -36.412 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.706 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.691 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.573 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds