Wall clock time and date at job start Tue Mar 31 2020 18:27:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.35229 * 126.06811 * 2 1
4 4 C 1.40424 * 107.86723 * 179.85071 * 3 2 1
5 5 N 1.40069 * 125.97691 * 180.16552 * 4 3 2
6 6 C 1.34775 * 120.00236 * 0.27234 * 5 4 3
7 7 O 1.21601 * 119.99615 * 359.97438 * 6 5 4
8 8 C 1.47591 * 120.00262 * 180.02562 * 6 5 4
9 9 C 1.38739 * 123.63238 * 37.87265 * 8 6 5
10 10 C 1.33384 * 115.05806 * 179.76852 * 9 8 6
11 11 S 1.70515 * 111.40578 * 0.48878 * 10 9 8
12 12 C 1.38154 * 123.62965 * 218.16615 * 8 6 5
13 13 C 1.46786 * 125.50178 * 359.97438 * 12 8 6
14 14 O 1.21566 * 119.99751 * 6.12752 * 13 12 8
15 15 O 1.34862 * 119.99714 * 186.13414 * 13 12 8
16 16 N 1.31239 * 108.04710 * 0.41511 * 4 3 2
17 17 N 1.34974 * 126.06301 * 180.31111 * 2 1 3
18 18 C 1.46495 * 125.97582 * 359.97438 * 17 2 1
19 19 C 1.50701 * 109.47109 * 90.00444 * 18 17 2
20 20 H 1.08000 * 120.00074 * 359.97438 * 19 18 17
21 21 C 1.37875 * 119.99981 * 180.02562 * 19 18 17
22 22 N 1.31519 * 120.00106 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 120.00099 * 179.97438 * 21 19 18
24 24 H 1.48504 * 109.46774 * 359.97438 * 23 21 19
25 25 H 1.48497 * 109.47276 * 119.99624 * 23 21 19
26 26 H 1.48505 * 109.47166 * 239.99987 * 23 21 19
27 27 H 1.09007 * 109.46904 * 269.69253 * 1 2 3
28 28 H 1.08997 * 109.47229 * 149.69424 * 1 2 3
29 29 H 1.08996 * 109.47080 * 29.69069 * 1 2 3
30 30 H 1.07999 * 126.06348 * 0.02562 * 3 2 1
31 31 H 0.96999 * 120.00026 * 180.26619 * 5 4 3
32 32 H 1.08002 * 122.47198 * 359.97438 * 9 8 6
33 33 H 1.08000 * 124.29494 * 180.18658 * 10 9 8
34 34 H 0.96702 * 116.99735 * 180.02562 * 15 13 12
35 35 H 1.08998 * 109.46972 * 209.99945 * 18 17 2
36 36 H 1.09001 * 109.47324 * 329.99778 * 18 17 2
37 37 H 0.96996 * 119.99632 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3032 1.0931 0.0000
4 6 3.6372 0.6545 0.0035
5 7 4.7729 1.4743 0.0079
6 6 4.6362 2.8150 0.0147
7 8 3.5269 3.3130 0.0165
8 6 5.8329 3.6789 0.0187
9 6 6.9895 3.3928 -0.6921
10 6 7.9654 4.2939 -0.5696
11 16 7.5076 5.5702 0.4643
12 6 5.9241 4.8564 0.7355
13 6 4.8690 5.4207 1.5857
14 8 3.8511 4.7888 1.7912
15 8 5.0289 6.6404 2.1386
16 7 3.6337 -0.6579 -0.0036
17 7 2.3016 -1.0911 -0.0059
18 6 1.8499 -2.4846 -0.0130
19 6 1.6945 -2.9552 -1.4362
20 1 1.9103 -2.2832 -2.2537
21 6 1.2760 -4.2432 -1.6946
22 7 1.0127 -5.0613 -0.6991
23 14 1.0827 -4.8262 -3.4587
24 1 1.4382 -3.7225 -4.3865
25 1 1.9812 -5.9839 -3.6987
26 1 -0.3254 -5.2354 -3.6934
27 1 -0.3633 -0.0055 1.0277
28 1 -0.3633 -0.8872 -0.5186
29 1 -0.3633 0.8927 -0.5090
30 1 1.9718 2.1210 0.0004
31 1 5.6578 1.0770 0.0062
32 1 7.0910 2.5076 -1.3025
33 1 8.9254 4.2215 -1.0590
34 1 4.3070 6.9699 2.6912
35 1 2.5846 -3.1073 0.4974
36 1 0.8914 -2.5585 0.5009
37 1 0.7186 -5.9675 -0.8810
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001600277127.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:27:12
Heat of formation + Delta-G solvation = -28.928768 kcal
Electronic energy + Delta-G solvation = -25386.444701 eV
Core-core repulsion = 21449.823203 eV
Total energy + Delta-G solvation = -3936.621498 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.077 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.38399 -41.43813 -40.51432 -38.31305 -37.04350 -36.34535 -35.30361 -33.06652
-32.66436 -31.34694 -28.92462 -27.92214 -27.43827 -25.04194 -23.81040 -23.31611
-21.62121 -21.28271 -19.93938 -19.83477 -18.81865 -18.66325 -17.80841 -17.37992
-17.14822 -16.75251 -16.66472 -16.36930 -16.13297 -15.78481 -15.52268 -14.85660
-14.58092 -14.36712 -14.26354 -14.06219 -13.84520 -13.67185 -13.57878 -13.42416
-13.15620 -12.85127 -12.69794 -12.60166 -12.28111 -12.14356 -12.11046 -11.84435
-11.57834 -11.33853 -10.97513 -10.74049 -10.14224 -9.69627 -9.60179 -9.15958
-8.33418 -6.51139 -0.98990 0.21453 0.70241 0.79578 1.06376 1.34689
1.37036 1.38629 1.43254 1.52354 1.80616 1.93775 2.24679 2.31789
2.39723 2.96252 3.45760 3.83193 3.94129 4.04768 4.12111 4.39163
4.43869 4.69356 4.73906 4.78461 4.85419 4.94012 4.96019 5.00602
5.01388 5.11201 5.23751 5.52090 5.53423 5.80024 5.88703 6.21251
6.24000 6.61288 6.87555 6.95066 7.05996 7.19930 8.73013
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.021776 B = 0.002561 C = 0.002375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1285.498257 B =10929.603527 C =11784.477683
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C 0.089 3.911
3 C -0.299 4.299
4 C 0.275 3.725
5 N -0.616 5.616
6 C 0.569 3.431
7 O -0.509 6.509
8 C -0.075 4.075
9 C -0.143 4.143
10 C -0.216 4.216
11 S 0.374 5.626
12 C -0.255 4.255
13 C 0.541 3.459
14 O -0.512 6.512
15 O -0.503 6.503
16 N -0.353 5.353
17 N -0.341 5.341
18 C 0.275 3.725
19 C -0.552 4.552
20 H 0.049 0.951
21 C 0.023 3.977
22 N -0.918 5.918
23 Si 0.973 3.027
24 H -0.274 1.274
25 H -0.273 1.273
26 H -0.267 1.267
27 H 0.092 0.908
28 H 0.070 0.930
29 H 0.100 0.900
30 H 0.161 0.839
31 H 0.424 0.576
32 H 0.169 0.831
33 H 0.220 0.780
34 H 0.437 0.563
35 H 0.026 0.974
36 H 0.052 0.948
37 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.528 24.241 2.479 28.894
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.042 4.042
3 C -0.330 4.330
4 C 0.021 3.979
5 N -0.266 5.266
6 C 0.354 3.646
7 O -0.382 6.382
8 C -0.096 4.096
9 C -0.171 4.171
10 C -0.353 4.353
11 S 0.645 5.355
12 C -0.375 4.375
13 C 0.383 3.617
14 O -0.401 6.401
15 O -0.318 6.318
16 N -0.184 5.184
17 N -0.123 5.123
18 C 0.156 3.844
19 C -0.591 4.591
20 H 0.068 0.932
21 C -0.178 4.178
22 N -0.557 5.557
23 Si 0.797 3.203
24 H -0.198 1.198
25 H -0.198 1.198
26 H -0.192 1.192
27 H 0.110 0.890
28 H 0.089 0.911
29 H 0.119 0.881
30 H 0.178 0.822
31 H 0.263 0.737
32 H 0.186 0.814
33 H 0.236 0.764
34 H 0.299 0.701
35 H 0.044 0.956
36 H 0.070 0.930
37 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 16.181 24.308 2.859 29.340
hybrid contribution -1.548 -1.520 -0.799 2.311
sum 14.633 22.788 2.060 27.160
Atomic orbital electron populations
1.20500 0.85291 1.04426 1.04096 1.21713 0.96684 0.86365 0.99402
1.21400 0.90182 0.99808 1.21622 1.19222 0.88546 0.89236 1.00941
1.42339 1.07108 1.04596 1.72600 1.18174 0.89342 0.80725 0.76362
1.90783 1.27025 1.74030 1.46349 1.19155 0.94979 0.94464 1.01006
1.20090 0.90410 1.03720 1.02905 1.25876 1.05887 0.99057 1.04529
1.82951 0.98517 1.18569 1.35501 1.23986 1.02848 1.01701 1.08970
1.19609 0.84683 0.79783 0.77665 1.91111 1.29517 1.61300 1.58166
1.84475 1.52050 1.32067 1.63222 1.77171 1.00063 1.09571 1.31585
1.48805 1.01677 1.07523 1.54318 1.19274 0.94937 0.72259 0.97916
1.21460 1.47520 0.98419 0.91666 0.93228 1.25746 0.93901 0.95844
1.02348 1.70013 1.45102 1.07435 1.33103 0.85284 0.78488 0.78097
0.78454 1.19841 1.19847 1.19208 0.88955 0.91104 0.88101 0.82192
0.73738 0.81367 0.76353 0.70094 0.95625 0.93028 0.91703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -3.05 9.89 71.24 0.70 -2.34 16
2 C 0.09 4.00 6.92 41.38 0.29 4.29 16
3 C -0.30 -13.42 9.52 22.11 0.21 -13.21 16
4 C 0.27 12.06 8.11 133.35 1.08 13.14 16
5 N -0.62 -21.00 5.41 -310.34 -1.68 -22.68 16
6 C 0.57 19.04 7.04 86.71 0.61 19.65 16
7 O -0.51 -20.95 11.38 18.76 0.21 -20.74 16
8 C -0.07 -1.76 5.75 -20.71 -0.12 -1.88 16
9 C -0.14 -2.08 9.64 21.29 0.21 -1.87 16
10 C -0.22 -1.66 10.87 66.72 0.73 -0.94 16
11 S 0.37 3.49 22.92 -56.49 -1.29 2.19 16
12 C -0.25 -5.33 6.50 24.49 0.16 -5.17 16
13 C 0.54 13.25 8.25 70.06 0.58 13.83 16
14 O -0.51 -17.74 14.40 27.21 0.39 -17.35 16
15 O -0.50 -7.51 13.30 -57.75 -0.77 -8.28 16
16 N -0.35 -17.35 12.59 -54.49 -0.69 -18.04 16
17 N -0.34 -17.23 3.59 -338.46 -1.22 -18.44 16
18 C 0.27 14.93 5.81 85.63 0.50 15.42 16
19 C -0.55 -31.53 9.39 25.60 0.24 -31.28 16
20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16
21 C 0.02 1.25 5.46 84.65 0.46 1.71 16
22 N -0.92 -52.41 13.29 21.45 0.28 -52.12 16
23 Si 0.97 43.52 29.54 68.60 2.03 45.55 16
24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16
26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
27 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16
28 H 0.07 2.71 7.71 -2.39 -0.02 2.69 16
29 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16
30 H 0.16 7.18 5.91 -2.91 -0.02 7.16 16
31 H 0.42 11.41 8.51 -92.71 -0.79 10.62 16
32 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16
33 H 0.22 -0.04 8.06 -2.91 -0.02 -0.07 16
34 H 0.44 2.93 9.11 -74.06 -0.67 2.25 16
35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.05 2.77 7.65 -2.39 -0.02 2.76 16
37 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16
Total: -1.00 -83.12 346.42 2.62 -80.50
By element:
Atomic # 1 Polarization: 18.36 SS G_CDS: -0.30 Total: 18.07 kcal
Atomic # 6 Polarization: 5.70 SS G_CDS: 5.64 Total: 11.34 kcal
Atomic # 7 Polarization: -107.99 SS G_CDS: -3.30 Total: -111.28 kcal
Atomic # 8 Polarization: -46.21 SS G_CDS: -0.16 Total: -46.37 kcal
Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal
Atomic # 16 Polarization: 3.49 SS G_CDS: -1.29 Total: 2.19 kcal
Total: -83.12 2.62 -80.50 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001600277127.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.575 kcal
(2) G-P(sol) polarization free energy of solvation -83.121 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.547 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds