Wall clock time and date at job start Tue Mar 31 2020 18:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35229 * 126.06811 * 2 1 4 4 C 1.40424 * 107.86723 * 179.85071 * 3 2 1 5 5 N 1.40069 * 125.97691 * 180.16552 * 4 3 2 6 6 C 1.34775 * 120.00236 * 0.27234 * 5 4 3 7 7 O 1.21601 * 119.99615 * 359.97438 * 6 5 4 8 8 C 1.47591 * 120.00262 * 180.02562 * 6 5 4 9 9 C 1.38739 * 123.63238 * 37.87265 * 8 6 5 10 10 C 1.33384 * 115.05806 * 179.76852 * 9 8 6 11 11 S 1.70515 * 111.40578 * 0.48878 * 10 9 8 12 12 C 1.38154 * 123.62965 * 218.16615 * 8 6 5 13 13 C 1.46786 * 125.50178 * 359.97438 * 12 8 6 14 14 O 1.21566 * 119.99751 * 6.12752 * 13 12 8 15 15 O 1.34862 * 119.99714 * 186.13414 * 13 12 8 16 16 N 1.31239 * 108.04710 * 0.41511 * 4 3 2 17 17 N 1.34974 * 126.06301 * 180.31111 * 2 1 3 18 18 C 1.46495 * 125.97582 * 359.97438 * 17 2 1 19 19 C 1.50701 * 109.47109 * 90.00444 * 18 17 2 20 20 H 1.08000 * 120.00074 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99981 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00106 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00099 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46774 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47276 * 119.99624 * 23 21 19 26 26 H 1.48505 * 109.47166 * 239.99987 * 23 21 19 27 27 H 1.09007 * 109.46904 * 269.69253 * 1 2 3 28 28 H 1.08997 * 109.47229 * 149.69424 * 1 2 3 29 29 H 1.08996 * 109.47080 * 29.69069 * 1 2 3 30 30 H 1.07999 * 126.06348 * 0.02562 * 3 2 1 31 31 H 0.96999 * 120.00026 * 180.26619 * 5 4 3 32 32 H 1.08002 * 122.47198 * 359.97438 * 9 8 6 33 33 H 1.08000 * 124.29494 * 180.18658 * 10 9 8 34 34 H 0.96702 * 116.99735 * 180.02562 * 15 13 12 35 35 H 1.08998 * 109.46972 * 209.99945 * 18 17 2 36 36 H 1.09001 * 109.47324 * 329.99778 * 18 17 2 37 37 H 0.96996 * 119.99632 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0035 5 7 4.7729 1.4743 0.0079 6 6 4.6362 2.8150 0.0147 7 8 3.5269 3.3130 0.0165 8 6 5.8329 3.6789 0.0187 9 6 6.9895 3.3928 -0.6921 10 6 7.9654 4.2939 -0.5696 11 16 7.5076 5.5702 0.4643 12 6 5.9241 4.8564 0.7355 13 6 4.8690 5.4207 1.5857 14 8 3.8511 4.7888 1.7912 15 8 5.0289 6.6404 2.1386 16 7 3.6337 -0.6579 -0.0036 17 7 2.3016 -1.0911 -0.0059 18 6 1.8499 -2.4846 -0.0130 19 6 1.6945 -2.9552 -1.4362 20 1 1.9103 -2.2832 -2.2537 21 6 1.2760 -4.2432 -1.6946 22 7 1.0127 -5.0613 -0.6991 23 14 1.0827 -4.8262 -3.4587 24 1 1.4382 -3.7225 -4.3865 25 1 1.9812 -5.9839 -3.6987 26 1 -0.3254 -5.2354 -3.6934 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8927 -0.5090 30 1 1.9718 2.1210 0.0004 31 1 5.6578 1.0770 0.0062 32 1 7.0910 2.5076 -1.3025 33 1 8.9254 4.2215 -1.0590 34 1 4.3070 6.9699 2.6912 35 1 2.5846 -3.1073 0.4974 36 1 0.8914 -2.5585 0.5009 37 1 0.7186 -5.9675 -0.8810 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600277127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:12 Heat of formation + Delta-G solvation = -28.928768 kcal Electronic energy + Delta-G solvation = -25386.444701 eV Core-core repulsion = 21449.823203 eV Total energy + Delta-G solvation = -3936.621498 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38399 -41.43813 -40.51432 -38.31305 -37.04350 -36.34535 -35.30361 -33.06652 -32.66436 -31.34694 -28.92462 -27.92214 -27.43827 -25.04194 -23.81040 -23.31611 -21.62121 -21.28271 -19.93938 -19.83477 -18.81865 -18.66325 -17.80841 -17.37992 -17.14822 -16.75251 -16.66472 -16.36930 -16.13297 -15.78481 -15.52268 -14.85660 -14.58092 -14.36712 -14.26354 -14.06219 -13.84520 -13.67185 -13.57878 -13.42416 -13.15620 -12.85127 -12.69794 -12.60166 -12.28111 -12.14356 -12.11046 -11.84435 -11.57834 -11.33853 -10.97513 -10.74049 -10.14224 -9.69627 -9.60179 -9.15958 -8.33418 -6.51139 -0.98990 0.21453 0.70241 0.79578 1.06376 1.34689 1.37036 1.38629 1.43254 1.52354 1.80616 1.93775 2.24679 2.31789 2.39723 2.96252 3.45760 3.83193 3.94129 4.04768 4.12111 4.39163 4.43869 4.69356 4.73906 4.78461 4.85419 4.94012 4.96019 5.00602 5.01388 5.11201 5.23751 5.52090 5.53423 5.80024 5.88703 6.21251 6.24000 6.61288 6.87555 6.95066 7.05996 7.19930 8.73013 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.002561 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.498257 B =10929.603527 C =11784.477683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.089 3.911 3 C -0.299 4.299 4 C 0.275 3.725 5 N -0.616 5.616 6 C 0.569 3.431 7 O -0.509 6.509 8 C -0.075 4.075 9 C -0.143 4.143 10 C -0.216 4.216 11 S 0.374 5.626 12 C -0.255 4.255 13 C 0.541 3.459 14 O -0.512 6.512 15 O -0.503 6.503 16 N -0.353 5.353 17 N -0.341 5.341 18 C 0.275 3.725 19 C -0.552 4.552 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.973 3.027 24 H -0.274 1.274 25 H -0.273 1.273 26 H -0.267 1.267 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.424 0.576 32 H 0.169 0.831 33 H 0.220 0.780 34 H 0.437 0.563 35 H 0.026 0.974 36 H 0.052 0.948 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.528 24.241 2.479 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.330 4.330 4 C 0.021 3.979 5 N -0.266 5.266 6 C 0.354 3.646 7 O -0.382 6.382 8 C -0.096 4.096 9 C -0.171 4.171 10 C -0.353 4.353 11 S 0.645 5.355 12 C -0.375 4.375 13 C 0.383 3.617 14 O -0.401 6.401 15 O -0.318 6.318 16 N -0.184 5.184 17 N -0.123 5.123 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.068 0.932 21 C -0.178 4.178 22 N -0.557 5.557 23 Si 0.797 3.203 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.192 1.192 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.178 0.822 31 H 0.263 0.737 32 H 0.186 0.814 33 H 0.236 0.764 34 H 0.299 0.701 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.181 24.308 2.859 29.340 hybrid contribution -1.548 -1.520 -0.799 2.311 sum 14.633 22.788 2.060 27.160 Atomic orbital electron populations 1.20500 0.85291 1.04426 1.04096 1.21713 0.96684 0.86365 0.99402 1.21400 0.90182 0.99808 1.21622 1.19222 0.88546 0.89236 1.00941 1.42339 1.07108 1.04596 1.72600 1.18174 0.89342 0.80725 0.76362 1.90783 1.27025 1.74030 1.46349 1.19155 0.94979 0.94464 1.01006 1.20090 0.90410 1.03720 1.02905 1.25876 1.05887 0.99057 1.04529 1.82951 0.98517 1.18569 1.35501 1.23986 1.02848 1.01701 1.08970 1.19609 0.84683 0.79783 0.77665 1.91111 1.29517 1.61300 1.58166 1.84475 1.52050 1.32067 1.63222 1.77171 1.00063 1.09571 1.31585 1.48805 1.01677 1.07523 1.54318 1.19274 0.94937 0.72259 0.97916 1.21460 1.47520 0.98419 0.91666 0.93228 1.25746 0.93901 0.95844 1.02348 1.70013 1.45102 1.07435 1.33103 0.85284 0.78488 0.78097 0.78454 1.19841 1.19847 1.19208 0.88955 0.91104 0.88101 0.82192 0.73738 0.81367 0.76353 0.70094 0.95625 0.93028 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.05 9.89 71.24 0.70 -2.34 16 2 C 0.09 4.00 6.92 41.38 0.29 4.29 16 3 C -0.30 -13.42 9.52 22.11 0.21 -13.21 16 4 C 0.27 12.06 8.11 133.35 1.08 13.14 16 5 N -0.62 -21.00 5.41 -310.34 -1.68 -22.68 16 6 C 0.57 19.04 7.04 86.71 0.61 19.65 16 7 O -0.51 -20.95 11.38 18.76 0.21 -20.74 16 8 C -0.07 -1.76 5.75 -20.71 -0.12 -1.88 16 9 C -0.14 -2.08 9.64 21.29 0.21 -1.87 16 10 C -0.22 -1.66 10.87 66.72 0.73 -0.94 16 11 S 0.37 3.49 22.92 -56.49 -1.29 2.19 16 12 C -0.25 -5.33 6.50 24.49 0.16 -5.17 16 13 C 0.54 13.25 8.25 70.06 0.58 13.83 16 14 O -0.51 -17.74 14.40 27.21 0.39 -17.35 16 15 O -0.50 -7.51 13.30 -57.75 -0.77 -8.28 16 16 N -0.35 -17.35 12.59 -54.49 -0.69 -18.04 16 17 N -0.34 -17.23 3.59 -338.46 -1.22 -18.44 16 18 C 0.27 14.93 5.81 85.63 0.50 15.42 16 19 C -0.55 -31.53 9.39 25.60 0.24 -31.28 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.02 1.25 5.46 84.65 0.46 1.71 16 22 N -0.92 -52.41 13.29 21.45 0.28 -52.12 16 23 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 28 H 0.07 2.71 7.71 -2.39 -0.02 2.69 16 29 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.16 7.18 5.91 -2.91 -0.02 7.16 16 31 H 0.42 11.41 8.51 -92.71 -0.79 10.62 16 32 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.22 -0.04 8.06 -2.91 -0.02 -0.07 16 34 H 0.44 2.93 9.11 -74.06 -0.67 2.25 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.05 2.77 7.65 -2.39 -0.02 2.76 16 37 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -83.12 346.42 2.62 -80.50 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.30 Total: 18.07 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.64 Total: 11.34 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -3.30 Total: -111.28 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.16 Total: -46.37 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.29 Total: 2.19 kcal Total: -83.12 2.62 -80.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600277127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.575 kcal (2) G-P(sol) polarization free energy of solvation -83.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds