Wall clock time and date at job start Tue Mar 31 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30314 * 125.90851 * 2 1 4 4 N 1.39890 * 109.23147 * 179.80126 * 3 2 1 5 5 C 1.46498 * 125.74663 * 180.26096 * 4 3 2 6 6 C 1.34820 * 108.50631 * 0.37222 * 4 3 2 7 7 N 1.38243 * 126.44171 * 179.90488 * 6 4 3 8 8 C 1.34774 * 120.00276 * 329.55839 * 7 6 4 9 9 O 1.21776 * 119.99772 * 354.08578 * 8 7 6 10 10 C 1.46122 * 120.00052 * 174.08903 * 8 7 6 11 11 S 1.75662 * 125.23390 * 0.02562 * 10 8 7 12 12 C 1.75471 * 92.09497 * 179.97438 * 11 10 8 13 13 C 1.32748 * 111.37518 * 359.97438 * 12 11 10 14 14 C 1.39617 * 125.23003 * 179.71626 * 10 8 7 15 15 C 1.40484 * 123.72114 * 0.02562 * 14 10 8 16 16 H 1.08000 * 120.00324 * 22.13077 * 15 14 10 17 17 C 1.40332 * 120.00090 * 202.13210 * 15 14 10 18 18 N 1.30633 * 119.99476 * 11.91219 * 17 15 14 19 19 Si 1.86798 * 120.00106 * 191.91165 * 17 15 14 20 20 H 1.48496 * 109.46991 * 60.00481 * 19 17 15 21 21 H 1.48501 * 109.46792 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47205 * 299.99783 * 19 17 15 23 23 C 1.39326 * 107.11514 * 359.64005 * 6 4 3 24 24 C 1.46713 * 126.51965 * 180.23012 * 23 6 4 25 25 O 1.21593 * 120.00120 * 89.99985 * 24 23 6 26 26 O 1.34834 * 119.99941 * 270.00026 * 24 23 6 27 27 H 1.09001 * 109.47544 * 269.97485 * 1 2 3 28 28 H 1.08998 * 109.47135 * 29.97449 * 1 2 3 29 29 H 1.09001 * 109.47394 * 149.97162 * 1 2 3 30 30 H 1.09000 * 109.47192 * 274.68424 * 5 4 3 31 31 H 1.08998 * 109.46962 * 34.68492 * 5 4 3 32 32 H 1.09002 * 109.46977 * 154.68712 * 5 4 3 33 33 H 0.97007 * 119.99736 * 149.28351 * 7 6 4 34 34 H 1.07999 * 124.30566 * 179.97438 * 12 11 10 35 35 H 1.08001 * 122.78108 * 180.02562 * 13 12 11 36 36 H 0.97001 * 119.99783 * 179.97438 * 18 17 15 37 37 H 0.96696 * 117.00381 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2712 1.0555 0.0000 4 7 3.6113 0.6540 0.0046 5 6 4.7723 1.5474 0.0114 6 6 3.6544 -0.6935 -0.0009 7 7 4.7921 -1.4787 -0.0007 8 6 5.9201 -1.0309 -0.5868 9 8 5.9087 0.0158 -1.2091 10 6 7.1567 -1.8013 -0.4756 11 16 7.3286 -3.3233 0.3846 12 6 9.0304 -3.4381 -0.0277 13 6 9.4222 -2.4013 -0.7582 14 6 8.3819 -1.4441 -1.0418 15 6 8.5800 -0.2789 -1.8011 16 1 7.9074 0.5589 -1.6902 17 6 9.6516 -0.2034 -2.7040 18 7 10.3222 -1.2810 -3.0131 19 14 10.1192 1.4378 -3.4636 20 1 10.4879 2.3937 -2.3886 21 1 11.2750 1.2492 -4.3767 22 1 8.9662 1.9750 -4.2298 23 6 2.3366 -1.1458 -0.0006 24 6 1.8936 -2.5445 -0.0007 25 8 1.7103 -3.1243 1.0523 26 8 1.6897 -3.1870 -1.1684 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 5.0133 1.8379 -1.0111 31 1 4.5425 2.4373 0.5974 32 1 5.6250 1.0317 0.4532 33 1 4.7797 -2.3504 0.4248 34 1 9.6765 -4.2491 0.2744 35 1 10.4355 -2.2862 -1.1139 36 1 11.0628 -1.2290 -3.6374 37 1 1.3978 -4.1074 -1.1180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600773888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:19 Heat of formation + Delta-G solvation = -19.187350 kcal Electronic energy + Delta-G solvation = -26342.672714 eV Core-core repulsion = 22406.473636 eV Total energy + Delta-G solvation = -3936.199078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46978 -39.54853 -38.69498 -36.37553 -35.80889 -34.38428 -33.55883 -33.33450 -29.91376 -29.42566 -28.93765 -26.64883 -25.73825 -23.37932 -22.65067 -21.29246 -20.33339 -19.12801 -19.01002 -18.19589 -17.83571 -17.24482 -16.41772 -15.98158 -15.70785 -15.43327 -15.33254 -14.60258 -14.23454 -14.07397 -13.91966 -13.32368 -13.10896 -12.98812 -12.72597 -12.58219 -12.52440 -12.18732 -12.02989 -11.80132 -11.59531 -11.41295 -11.36968 -11.18557 -10.92839 -10.67790 -10.44078 -10.39385 -10.07047 -9.86004 -9.47565 -8.88016 -8.63209 -8.01264 -7.75014 -7.39288 -7.34379 -4.83829 1.71633 2.09259 2.25696 2.44213 2.55089 2.81871 2.82806 2.86237 2.91912 3.38799 3.45285 3.50160 3.60861 3.61996 4.02710 4.66043 4.95566 5.02138 5.43441 5.48209 5.58923 5.65595 5.74631 5.78743 5.84661 5.97479 6.14381 6.23163 6.35104 6.54436 6.57754 6.70964 6.89079 6.93940 7.17571 7.27492 7.39730 7.67654 7.99808 8.04801 8.07763 8.27035 8.39130 8.97304 9.54606 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.004130 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.757807 B = 6778.741805 C = 8178.958752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.132 3.868 3 N -0.297 5.297 4 N -0.349 5.349 5 C 0.120 3.880 6 C 0.405 3.595 7 N -0.662 5.662 8 C 0.586 3.414 9 O -0.542 6.542 10 C -0.436 4.436 11 S -0.050 6.050 12 C -0.194 4.194 13 C -0.102 4.102 14 C 0.143 3.857 15 C -0.360 4.360 16 H 0.115 0.885 17 C 0.066 3.934 18 N -0.760 5.760 19 Si 0.928 3.072 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.256 1.256 23 C -0.333 4.333 24 C 0.578 3.422 25 O -0.513 6.513 26 O -0.508 6.508 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.417 0.583 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.294 0.706 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 -0.082 2.363 7.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.036 4.036 3 N -0.120 5.120 4 N -0.132 5.132 5 C -0.020 4.020 6 C 0.176 3.824 7 N -0.311 5.311 8 C 0.388 3.612 9 O -0.425 6.425 10 C -0.555 4.555 11 S 0.204 5.796 12 C -0.327 4.327 13 C -0.134 4.134 14 C 0.132 3.868 15 C -0.390 4.390 16 H 0.132 0.868 17 C -0.159 4.159 18 N -0.382 5.382 19 Si 0.750 3.250 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.350 4.350 24 C 0.420 3.580 25 O -0.401 6.401 26 O -0.318 6.318 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.255 0.745 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.105 0.895 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.267 1.261 2.852 7.908 hybrid contribution 1.315 -0.773 -0.971 1.808 sum -5.952 0.488 1.881 6.261 Atomic orbital electron populations 1.20222 0.86216 1.03497 1.03267 1.21916 0.96433 0.88166 0.97067 1.77020 0.85321 1.21639 1.28031 1.48304 1.06150 1.02765 1.55968 1.22259 0.83100 0.91990 1.04680 1.17858 0.86971 0.83474 0.94129 1.43114 1.08830 1.20505 1.58683 1.17032 0.80834 0.84844 0.78465 1.90747 1.84519 1.24014 1.43224 1.22162 0.96034 1.05163 1.32119 1.82907 1.08882 1.25079 1.62750 1.24972 0.97453 1.03363 1.06960 1.21689 1.01162 0.93775 0.96798 1.17890 0.88004 0.91462 0.89457 1.20144 1.06395 1.00093 1.12355 0.86756 1.26489 0.94177 0.99352 0.95853 1.69657 1.14783 1.30033 1.23767 0.85990 0.79109 0.80352 0.79507 1.18053 1.19806 1.18004 1.18213 0.91115 0.91115 1.34549 1.19691 0.72098 0.85580 0.80605 1.90885 1.47940 1.68151 1.33101 1.84791 1.79968 1.31403 1.35666 0.90068 0.90180 0.90671 0.88639 0.91355 0.88862 0.74481 0.84149 0.83568 0.89459 0.73693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.28 36.00 0.37 -0.48 16 2 C 0.13 2.16 7.26 -82.01 -0.60 1.56 16 3 N -0.30 -5.35 12.47 33.91 0.42 -4.92 16 4 N -0.35 -6.63 3.94 -66.76 -0.26 -6.89 16 5 C 0.12 2.08 9.23 59.85 0.55 2.63 16 6 C 0.41 7.88 7.33 -153.57 -1.13 6.76 16 7 N -0.66 -13.13 5.32 -12.43 -0.07 -13.20 16 8 C 0.59 13.10 6.66 -13.10 -0.09 13.01 16 9 O -0.54 -12.72 9.56 5.12 0.05 -12.67 16 10 C -0.44 -10.10 6.50 -35.91 -0.23 -10.33 16 11 S -0.05 -1.01 22.26 -107.50 -2.39 -3.41 16 12 C -0.19 -3.88 11.06 28.85 0.32 -3.56 16 13 C -0.10 -2.27 9.05 -39.13 -0.35 -2.62 16 14 C 0.14 3.45 5.68 -106.20 -0.60 2.85 16 15 C -0.36 -8.66 8.54 -37.95 -0.32 -8.98 16 16 H 0.11 2.81 5.99 -52.49 -0.31 2.49 16 17 C 0.07 1.44 5.37 -17.27 -0.09 1.35 16 18 N -0.76 -16.65 10.84 55.57 0.60 -16.05 16 19 Si 0.93 16.63 29.58 -169.99 -5.03 11.60 16 20 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 21 H -0.27 -4.68 7.11 56.52 0.40 -4.27 16 22 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 23 C -0.33 -5.97 6.02 -104.84 -0.63 -6.60 16 24 C 0.58 9.46 7.83 34.15 0.27 9.73 16 25 O -0.51 -9.16 17.90 -19.34 -0.35 -9.51 16 26 O -0.51 -6.86 13.44 -40.86 -0.55 -7.41 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 30 H 0.10 1.75 7.00 -51.93 -0.36 1.39 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 1.73 6.00 -51.93 -0.31 1.42 16 33 H 0.42 7.80 7.91 -40.82 -0.32 7.47 16 34 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 35 H 0.15 3.21 6.40 -52.49 -0.34 2.87 16 36 H 0.29 5.75 8.29 -40.82 -0.34 5.41 16 37 H 0.41 3.28 9.11 45.56 0.42 3.70 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -28.87 338.65 -7.48 -36.35 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -2.47 Total: 15.68 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.54 Total: 5.32 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.70 Total: -41.06 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.85 Total: -29.59 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.39 Total: -3.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.87 -7.48 -36.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600773888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.163 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds