Wall clock time and date at job start Tue Mar 31 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30314 * 125.90851 * 2 1 4 4 N 1.39890 * 109.23147 * 179.80126 * 3 2 1 5 5 C 1.46498 * 125.74663 * 180.26096 * 4 3 2 6 6 C 1.34820 * 108.50631 * 0.37222 * 4 3 2 7 7 N 1.38243 * 126.44171 * 179.90488 * 6 4 3 8 8 C 1.34774 * 120.00276 * 329.55839 * 7 6 4 9 9 O 1.21776 * 119.99772 * 354.08578 * 8 7 6 10 10 C 1.46122 * 120.00052 * 174.08903 * 8 7 6 11 11 S 1.75662 * 125.23390 * 0.02562 * 10 8 7 12 12 C 1.75471 * 92.09497 * 179.97438 * 11 10 8 13 13 C 1.32748 * 111.37518 * 359.97438 * 12 11 10 14 14 C 1.39617 * 125.23003 * 179.71626 * 10 8 7 15 15 C 1.40484 * 123.72114 * 0.02562 * 14 10 8 16 16 H 1.08000 * 120.00324 * 22.13077 * 15 14 10 17 17 C 1.40332 * 120.00090 * 202.13210 * 15 14 10 18 18 N 1.30633 * 119.99476 * 11.91219 * 17 15 14 19 19 Si 1.86798 * 120.00106 * 191.91165 * 17 15 14 20 20 H 1.48496 * 109.46991 * 60.00481 * 19 17 15 21 21 H 1.48501 * 109.46792 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47205 * 299.99783 * 19 17 15 23 23 C 1.39326 * 107.11514 * 359.64005 * 6 4 3 24 24 C 1.46713 * 126.51965 * 180.23012 * 23 6 4 25 25 O 1.21593 * 120.00120 * 89.99985 * 24 23 6 26 26 O 1.34834 * 119.99941 * 270.00026 * 24 23 6 27 27 H 1.09001 * 109.47544 * 269.97485 * 1 2 3 28 28 H 1.08998 * 109.47135 * 29.97449 * 1 2 3 29 29 H 1.09001 * 109.47394 * 149.97162 * 1 2 3 30 30 H 1.09000 * 109.47192 * 274.68424 * 5 4 3 31 31 H 1.08998 * 109.46962 * 34.68492 * 5 4 3 32 32 H 1.09002 * 109.46977 * 154.68712 * 5 4 3 33 33 H 0.97007 * 119.99736 * 149.28351 * 7 6 4 34 34 H 1.07999 * 124.30566 * 179.97438 * 12 11 10 35 35 H 1.08001 * 122.78108 * 180.02562 * 13 12 11 36 36 H 0.97001 * 119.99783 * 179.97438 * 18 17 15 37 37 H 0.96696 * 117.00381 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2712 1.0555 0.0000 4 7 3.6113 0.6540 0.0046 5 6 4.7723 1.5474 0.0114 6 6 3.6544 -0.6935 -0.0009 7 7 4.7921 -1.4787 -0.0007 8 6 5.9201 -1.0309 -0.5868 9 8 5.9087 0.0158 -1.2091 10 6 7.1567 -1.8013 -0.4756 11 16 7.3286 -3.3233 0.3846 12 6 9.0304 -3.4381 -0.0277 13 6 9.4222 -2.4013 -0.7582 14 6 8.3819 -1.4441 -1.0418 15 6 8.5800 -0.2789 -1.8011 16 1 7.9074 0.5589 -1.6902 17 6 9.6516 -0.2034 -2.7040 18 7 10.3222 -1.2810 -3.0131 19 14 10.1192 1.4378 -3.4636 20 1 10.4879 2.3937 -2.3886 21 1 11.2750 1.2492 -4.3767 22 1 8.9662 1.9750 -4.2298 23 6 2.3366 -1.1458 -0.0006 24 6 1.8936 -2.5445 -0.0007 25 8 1.7103 -3.1243 1.0523 26 8 1.6897 -3.1870 -1.1684 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5143 30 1 5.0133 1.8379 -1.0111 31 1 4.5425 2.4373 0.5974 32 1 5.6250 1.0317 0.4532 33 1 4.7797 -2.3504 0.4248 34 1 9.6765 -4.2491 0.2744 35 1 10.4355 -2.2862 -1.1139 36 1 11.0628 -1.2290 -3.6374 37 1 1.3978 -4.1074 -1.1180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600773888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:18 Heat of formation + Delta-G solvation = -37.395168 kcal Electronic energy + Delta-G solvation = -26343.462264 eV Core-core repulsion = 22406.473636 eV Total energy + Delta-G solvation = -3936.988628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.88059 -40.85425 -40.28282 -38.04365 -37.01772 -35.99124 -35.05963 -34.84474 -31.41366 -30.79307 -30.34730 -28.30151 -27.07801 -24.89222 -24.09712 -22.88167 -21.71731 -20.76832 -20.51270 -19.70552 -19.18165 -18.66721 -17.91184 -17.54503 -17.16312 -16.94899 -16.81072 -16.04129 -15.79989 -15.52527 -15.38242 -14.50343 -14.43951 -14.27550 -14.23621 -14.06201 -13.87499 -13.64195 -13.34297 -13.29589 -13.06746 -12.96819 -12.72018 -12.58176 -12.27833 -12.13947 -12.09588 -11.78778 -11.53997 -11.46093 -11.11811 -10.57703 -10.03685 -9.54129 -9.39209 -9.05471 -8.98086 -6.58056 0.08609 0.56853 0.96559 1.06168 1.25251 1.30566 1.32983 1.35923 1.46141 1.70501 1.87702 1.97395 2.11672 2.27858 2.40841 3.20565 3.40760 3.77168 4.07393 4.26654 4.29966 4.35657 4.47394 4.58200 4.70144 4.75952 4.77101 4.87344 4.92103 4.98752 5.17930 5.28533 5.46166 5.48209 5.50063 5.66567 5.83968 6.10927 6.29222 6.49926 6.57172 6.68347 6.98228 7.27509 7.93948 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.004130 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.757807 B = 6778.741805 C = 8178.958752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.134 3.866 3 N -0.310 5.310 4 N -0.360 5.360 5 C 0.126 3.874 6 C 0.378 3.622 7 N -0.655 5.655 8 C 0.583 3.417 9 O -0.560 6.560 10 C -0.468 4.468 11 S -0.014 6.014 12 C -0.181 4.181 13 C -0.127 4.127 14 C 0.118 3.882 15 C -0.392 4.392 16 H 0.098 0.902 17 C 0.036 3.964 18 N -0.776 5.776 19 Si 0.990 3.010 20 H -0.253 1.253 21 H -0.254 1.254 22 H -0.268 1.268 23 C -0.340 4.340 24 C 0.587 3.413 25 O -0.531 6.531 26 O -0.503 6.503 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.421 0.579 34 H 0.177 0.823 35 H 0.145 0.855 36 H 0.305 0.695 37 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -0.581 2.359 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.034 4.034 3 N -0.133 5.133 4 N -0.142 5.142 5 C -0.013 4.013 6 C 0.149 3.851 7 N -0.304 5.304 8 C 0.385 3.615 9 O -0.444 6.444 10 C -0.586 4.586 11 S 0.241 5.759 12 C -0.315 4.315 13 C -0.159 4.159 14 C 0.107 3.893 15 C -0.421 4.421 16 H 0.116 0.884 17 C -0.186 4.186 18 N -0.399 5.399 19 Si 0.809 3.191 20 H -0.177 1.177 21 H -0.177 1.177 22 H -0.192 1.192 23 C -0.357 4.357 24 C 0.429 3.571 25 O -0.420 6.420 26 O -0.316 6.316 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.260 0.740 34 H 0.194 0.806 35 H 0.162 0.838 36 H 0.117 0.883 37 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -8.099 0.713 2.853 8.617 hybrid contribution 1.446 -0.717 -0.947 1.872 sum -6.653 -0.004 1.905 6.921 Atomic orbital electron populations 1.20444 0.82684 1.05059 1.04880 1.22717 0.98445 0.87044 0.95170 1.77011 0.84934 1.22463 1.28846 1.48475 1.06800 1.02769 1.56199 1.22115 0.82585 0.92575 1.04068 1.18153 0.87320 0.83939 0.95677 1.42823 1.08525 1.20636 1.58416 1.17084 0.81403 0.84597 0.78428 1.90733 1.85000 1.24688 1.43980 1.22530 0.96269 1.06885 1.32932 1.82645 1.08703 1.22913 1.61646 1.25418 0.97885 1.03248 1.04936 1.21632 1.00840 0.94687 0.98784 1.18300 0.88990 0.92216 0.89816 1.20215 1.07732 1.00102 1.14092 0.88434 1.27136 0.93504 1.02390 0.95614 1.69639 1.15033 1.31278 1.23977 0.85101 0.78787 0.76385 0.78805 1.17656 1.17737 1.19239 1.18601 0.90752 0.92628 1.33680 1.19391 0.71733 0.85080 0.80897 1.90882 1.48949 1.68375 1.33837 1.84723 1.79494 1.33352 1.34081 0.88275 0.88487 0.89235 0.90109 0.88551 0.90608 0.74044 0.80581 0.83782 0.88269 0.70784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 10.28 71.23 0.73 -0.74 16 2 C 0.13 4.19 7.26 43.58 0.32 4.50 16 3 N -0.31 -10.91 12.47 -46.63 -0.58 -11.49 16 4 N -0.36 -13.78 3.94 -365.11 -1.44 -15.22 16 5 C 0.13 4.54 9.23 127.77 1.18 5.72 16 6 C 0.38 14.79 7.33 132.63 0.97 15.76 16 7 N -0.65 -26.41 5.32 -311.41 -1.66 -28.07 16 8 C 0.58 26.90 6.66 86.29 0.57 27.47 16 9 O -0.56 -27.47 9.56 -4.59 -0.04 -27.51 16 10 C -0.47 -22.13 6.50 24.65 0.16 -21.97 16 11 S -0.01 -0.54 22.26 -56.49 -1.26 -1.80 16 12 C -0.18 -7.03 11.06 66.64 0.74 -6.29 16 13 C -0.13 -5.68 9.05 22.61 0.20 -5.48 16 14 C 0.12 5.85 5.68 -20.89 -0.12 5.74 16 15 C -0.39 -19.56 8.54 23.33 0.20 -19.36 16 16 H 0.10 5.07 5.99 -2.91 -0.02 5.05 16 17 C 0.04 1.61 5.37 85.38 0.46 2.07 16 18 N -0.78 -34.17 10.84 21.89 0.24 -33.93 16 19 Si 0.99 34.24 29.58 68.60 2.03 36.27 16 20 H -0.25 -8.50 7.11 99.48 0.71 -7.80 16 21 H -0.25 -7.90 7.11 99.48 0.71 -7.20 16 22 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 23 C -0.34 -11.88 6.02 -20.01 -0.12 -12.00 16 24 C 0.59 18.28 7.83 70.04 0.55 18.83 16 25 O -0.53 -18.15 17.90 19.53 0.35 -17.80 16 26 O -0.50 -12.52 13.44 -57.47 -0.77 -13.29 16 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.57 8.00 -2.39 -0.02 1.56 16 30 H 0.08 3.11 7.00 -2.39 -0.02 3.09 16 31 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.08 2.96 6.00 -2.39 -0.01 2.95 16 33 H 0.42 15.84 7.91 -92.70 -0.73 15.10 16 34 H 0.18 5.44 8.06 -2.91 -0.02 5.41 16 35 H 0.14 6.39 6.40 -2.91 -0.02 6.37 16 36 H 0.31 11.80 8.29 -92.71 -0.77 11.03 16 37 H 0.43 5.82 9.11 -74.06 -0.67 5.14 16 Total: -1.00 -63.21 338.65 2.48 -60.73 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.22 Total: 37.85 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.84 Total: 14.26 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -3.44 Total: -88.72 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -0.47 Total: -58.60 kcal Atomic # 14 Polarization: 34.24 SS G_CDS: 2.03 Total: 36.27 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -1.26 Total: -1.80 kcal Total: -63.21 2.48 -60.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600773888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.333 kcal (2) G-P(sol) polarization free energy of solvation -63.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds