Wall clock time and date at job start Tue Mar 31 2020 19:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33480 * 125.82262 * 2 1 4 4 C 1.34901 * 109.88855 * 179.97438 * 3 2 1 5 5 C 1.46584 * 125.66685 * 179.97438 * 4 3 2 6 6 O 1.21608 * 120.00521 * 180.02562 * 5 4 3 7 7 O 1.34883 * 119.99933 * 0.04276 * 5 4 3 8 8 C 1.36160 * 108.67086 * 359.97438 * 4 3 2 9 9 C 1.37838 * 125.82058 * 179.97438 * 2 1 3 10 10 C 1.47496 * 126.76999 * 0.02562 * 9 2 1 11 11 O 1.21593 * 120.00453 * 316.26664 * 10 9 2 12 12 N 1.34782 * 119.99999 * 136.26308 * 10 9 2 13 13 C 1.46504 * 119.99695 * 3.95138 * 12 10 9 14 14 C 1.50694 * 109.47101 * 93.54722 * 13 12 10 15 15 H 1.08005 * 120.00141 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00208 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46961 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46954 * 120.00067 * 18 16 14 21 21 H 1.48496 * 109.46967 * 239.99832 * 18 16 14 22 22 C 1.46502 * 120.00081 * 183.95101 * 12 10 9 23 23 C 1.52995 * 109.46987 * 93.14647 * 22 12 10 24 24 F 1.39904 * 109.47125 * 60.00165 * 23 22 12 25 25 F 1.39898 * 109.47089 * 179.97438 * 23 22 12 26 26 F 1.39898 * 109.47310 * 299.99991 * 23 22 12 27 27 H 1.09000 * 109.47326 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46863 * 119.97652 * 1 2 3 29 29 H 1.08996 * 109.47371 * 239.97487 * 1 2 3 30 30 H 0.96704 * 116.99787 * 180.02562 * 7 5 4 31 31 H 1.07998 * 126.69097 * 179.74099 * 8 4 3 32 32 H 1.09004 * 109.46731 * 213.54335 * 13 12 10 33 33 H 1.08997 * 109.47413 * 333.54445 * 13 12 10 34 34 H 0.97000 * 119.99462 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.46772 * 213.14801 * 22 12 10 36 36 H 1.08993 * 109.46996 * 333.14469 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2882 1.0823 0.0000 4 6 3.5854 0.7120 0.0006 5 6 4.7342 1.6224 0.0002 6 8 5.8649 1.1749 0.0003 7 8 4.5372 2.9568 0.0001 8 6 3.6504 -0.6481 0.0015 9 6 2.3137 -1.1177 0.0005 10 6 1.8724 -2.5251 0.0006 11 8 0.9642 -2.8775 0.7283 12 7 2.4758 -3.4206 -0.8060 13 6 3.6258 -3.0162 -1.6186 14 6 4.8996 -3.3216 -0.8735 15 1 4.8568 -3.7716 0.1075 16 6 6.1197 -3.0267 -1.4440 17 7 6.1718 -2.4794 -2.6387 18 14 7.6986 -3.4047 -0.5200 19 1 7.3696 -4.0136 0.7938 20 1 8.5215 -4.3526 -1.3134 21 1 8.4597 -2.1477 -0.3059 22 6 1.9817 -4.7983 -0.8701 23 6 0.9784 -4.9273 -2.0180 24 9 1.6061 -4.6003 -3.2249 25 9 0.5070 -6.2430 -2.0797 26 9 -0.0946 -4.0567 -1.7996 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5135 -0.8902 29 1 -0.3634 -0.5142 0.8897 30 1 5.3255 3.5170 -0.0005 31 1 4.5463 -1.2513 -0.0018 32 1 3.6157 -3.5644 -2.5607 33 1 3.5703 -1.9465 -1.8200 34 1 7.0301 -2.2716 -3.0398 35 1 2.8178 -5.4765 -1.0403 36 1 1.4927 -5.0530 0.0701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600823566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:46 Heat of formation + Delta-G solvation = -263.200875 kcal Electronic energy + Delta-G solvation = -30330.281256 eV Core-core repulsion = 25366.598595 eV Total energy + Delta-G solvation = -4963.682661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.72152 -47.27563 -47.16862 -42.58789 -39.71157 -39.15284 -35.99997 -35.44855 -33.28630 -32.70442 -31.92890 -29.61795 -27.74358 -27.07569 -24.14037 -23.25305 -23.05259 -21.85462 -20.63762 -19.22993 -18.30432 -18.17134 -17.69455 -17.39490 -17.19009 -16.53040 -16.34835 -15.84310 -15.44835 -15.08791 -15.01666 -14.43917 -14.19662 -14.09441 -14.05793 -13.65994 -13.48141 -13.37283 -13.35522 -13.05054 -12.94096 -12.88842 -12.83383 -12.45971 -12.05987 -11.85000 -11.70688 -11.48743 -11.36077 -11.06057 -10.87754 -10.72285 -10.33074 -9.94631 -9.70946 -9.45981 -8.64469 -8.40169 -8.16394 -6.28931 -4.38779 1.06904 1.95686 2.51779 2.90138 3.08381 3.21069 3.29106 3.31590 3.32443 3.42416 3.58607 4.20411 4.28625 4.40336 4.62130 4.73462 4.97816 5.06902 5.20763 5.35800 5.48121 5.52611 5.67839 5.70640 5.85557 5.91906 6.17014 6.34605 6.48121 6.72666 6.99916 7.06288 7.21805 7.62694 7.86791 7.92320 7.99135 8.50681 8.71471 9.29836 10.77388 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.006093 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.842923 B = 4594.263640 C = 6862.560002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.088 3.912 3 O -0.149 6.149 4 C -0.100 4.100 5 C 0.572 3.428 6 O -0.483 6.483 7 O -0.512 6.512 8 C -0.034 4.034 9 C -0.232 4.232 10 C 0.598 3.402 11 O -0.550 6.550 12 N -0.587 5.587 13 C 0.227 3.773 14 C -0.554 4.554 15 H 0.066 0.934 16 C 0.074 3.926 17 N -0.877 5.877 18 Si 0.893 3.107 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.277 1.277 22 C 0.081 3.919 23 C 0.432 3.568 24 F -0.178 7.178 25 F -0.189 7.189 26 F -0.183 7.183 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.414 0.586 31 H 0.201 0.799 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.268 0.732 35 H 0.127 0.873 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 3.948 2.710 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.033 3.967 3 O -0.044 6.044 4 C -0.148 4.148 5 C 0.416 3.584 6 O -0.371 6.371 7 O -0.324 6.324 8 C -0.053 4.053 9 C -0.237 4.237 10 C 0.387 3.613 11 O -0.430 6.430 12 N -0.316 5.316 13 C 0.108 3.892 14 C -0.592 4.592 15 H 0.084 0.916 16 C -0.132 4.132 17 N -0.513 5.513 18 Si 0.720 3.280 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.203 1.203 22 C -0.045 4.045 23 C 0.376 3.624 24 F -0.159 7.159 25 F -0.170 7.170 26 F -0.164 7.164 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.272 0.728 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.145 0.855 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.714 3.788 2.894 9.933 hybrid contribution 1.560 0.036 -0.030 1.561 sum -7.154 3.824 2.864 8.603 Atomic orbital electron populations 1.20537 0.83486 1.04162 1.05275 1.23317 0.94064 0.82996 0.96372 1.83898 1.15935 1.33982 1.70604 1.20349 0.80647 0.92609 1.21167 1.18807 0.86272 0.80360 0.72991 1.91061 1.22425 1.77581 1.46037 1.84649 1.43279 1.18208 1.86240 1.23012 0.99623 0.91870 0.90806 1.20190 0.93416 0.94069 1.15990 1.17217 0.80890 0.84013 0.79191 1.90714 1.31071 1.80027 1.41213 1.47992 1.32608 1.07486 1.43564 1.19849 0.80920 0.97703 0.90681 1.21433 0.90172 1.43568 1.04034 0.91571 1.24922 0.99238 0.94235 0.94783 1.69917 1.26367 1.40356 1.14665 0.86497 0.83051 0.78469 0.79973 1.19486 1.20752 1.20273 1.22421 0.97491 0.88024 0.96601 1.21522 0.82224 0.73192 0.85452 1.93206 1.81879 1.92338 1.48521 1.93145 1.89778 1.37305 1.96792 1.93172 1.58554 1.69951 1.94736 0.90040 0.88801 0.87895 0.72757 0.78240 0.93555 0.93339 0.92219 0.85521 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.91 36.01 0.36 -0.58 16 2 C 0.09 1.43 7.41 -34.45 -0.26 1.18 16 3 O -0.15 -2.49 10.61 5.76 0.06 -2.43 16 4 C -0.10 -1.83 7.14 -36.96 -0.26 -2.10 16 5 C 0.57 9.88 8.31 34.10 0.28 10.16 16 6 O -0.48 -9.78 17.64 -19.35 -0.34 -10.12 16 7 O -0.51 -6.62 13.44 -42.60 -0.57 -7.20 16 8 C -0.03 -0.69 8.24 -39.02 -0.32 -1.01 16 9 C -0.23 -4.43 5.17 -104.96 -0.54 -4.97 16 10 C 0.60 11.83 7.05 -12.49 -0.09 11.74 16 11 O -0.55 -11.13 16.23 5.28 0.09 -11.05 16 12 N -0.59 -11.55 2.37 -176.31 -0.42 -11.97 16 13 C 0.23 5.12 4.52 -5.19 -0.02 5.09 16 14 C -0.55 -13.42 7.10 -34.44 -0.24 -13.67 16 15 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 16 C 0.07 1.87 5.43 -17.82 -0.10 1.78 16 17 N -0.88 -23.42 13.29 55.43 0.74 -22.68 16 18 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.08 1.35 5.52 -4.04 -0.02 1.33 16 23 C 0.43 7.07 3.29 37.15 0.12 7.20 16 24 F -0.18 -3.20 15.88 2.25 0.04 -3.16 16 25 F -0.19 -2.84 17.32 2.25 0.04 -2.80 16 26 F -0.18 -3.15 16.88 2.25 0.04 -3.11 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.21 8.12 -51.93 -0.42 0.79 16 30 H 0.41 3.12 9.11 45.56 0.42 3.53 16 31 H 0.20 4.54 5.45 -52.49 -0.29 4.25 16 32 H 0.05 1.11 6.91 -51.93 -0.36 0.75 16 33 H 0.05 1.17 5.51 -51.93 -0.29 0.88 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.13 1.95 8.10 -51.93 -0.42 1.53 16 36 H 0.12 1.85 7.28 -51.93 -0.38 1.48 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -30.23 336.48 -3.51 -33.74 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.13 Total: 4.39 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: -1.10 Total: 16.14 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.32 Total: -34.65 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.77 Total: -30.79 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.11 Total: -9.07 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.23 -3.51 -33.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600823566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.458 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -259.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds