Wall clock time and date at job start Tue Mar 31 2020 19:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33480 * 125.82262 * 2 1 4 4 C 1.34901 * 109.88855 * 179.97438 * 3 2 1 5 5 C 1.46584 * 125.66685 * 179.97438 * 4 3 2 6 6 O 1.21608 * 120.00521 * 180.02562 * 5 4 3 7 7 O 1.34883 * 119.99933 * 0.04276 * 5 4 3 8 8 C 1.36160 * 108.67086 * 359.97438 * 4 3 2 9 9 C 1.37838 * 125.82058 * 179.97438 * 2 1 3 10 10 C 1.47496 * 126.76999 * 0.02562 * 9 2 1 11 11 O 1.21593 * 120.00453 * 316.26664 * 10 9 2 12 12 N 1.34782 * 119.99999 * 136.26308 * 10 9 2 13 13 C 1.46504 * 119.99695 * 3.95138 * 12 10 9 14 14 C 1.50694 * 109.47101 * 93.54722 * 13 12 10 15 15 H 1.08005 * 120.00141 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00208 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46961 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46954 * 120.00067 * 18 16 14 21 21 H 1.48496 * 109.46967 * 239.99832 * 18 16 14 22 22 C 1.46502 * 120.00081 * 183.95101 * 12 10 9 23 23 C 1.52995 * 109.46987 * 93.14647 * 22 12 10 24 24 F 1.39904 * 109.47125 * 60.00165 * 23 22 12 25 25 F 1.39898 * 109.47089 * 179.97438 * 23 22 12 26 26 F 1.39898 * 109.47310 * 299.99991 * 23 22 12 27 27 H 1.09000 * 109.47326 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46863 * 119.97652 * 1 2 3 29 29 H 1.08996 * 109.47371 * 239.97487 * 1 2 3 30 30 H 0.96704 * 116.99787 * 180.02562 * 7 5 4 31 31 H 1.07998 * 126.69097 * 179.74099 * 8 4 3 32 32 H 1.09004 * 109.46731 * 213.54335 * 13 12 10 33 33 H 1.08997 * 109.47413 * 333.54445 * 13 12 10 34 34 H 0.97000 * 119.99462 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.46772 * 213.14801 * 22 12 10 36 36 H 1.08993 * 109.46996 * 333.14469 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2882 1.0823 0.0000 4 6 3.5854 0.7120 0.0006 5 6 4.7342 1.6224 0.0002 6 8 5.8649 1.1749 0.0003 7 8 4.5372 2.9568 0.0001 8 6 3.6504 -0.6481 0.0015 9 6 2.3137 -1.1177 0.0005 10 6 1.8724 -2.5251 0.0006 11 8 0.9642 -2.8775 0.7283 12 7 2.4758 -3.4206 -0.8060 13 6 3.6258 -3.0162 -1.6186 14 6 4.8996 -3.3216 -0.8735 15 1 4.8568 -3.7716 0.1075 16 6 6.1197 -3.0267 -1.4440 17 7 6.1718 -2.4794 -2.6387 18 14 7.6986 -3.4047 -0.5200 19 1 7.3696 -4.0136 0.7938 20 1 8.5215 -4.3526 -1.3134 21 1 8.4597 -2.1477 -0.3059 22 6 1.9817 -4.7983 -0.8701 23 6 0.9784 -4.9273 -2.0180 24 9 1.6061 -4.6003 -3.2249 25 9 0.5070 -6.2430 -2.0797 26 9 -0.0946 -4.0567 -1.7996 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5135 -0.8902 29 1 -0.3634 -0.5142 0.8897 30 1 5.3255 3.5170 -0.0005 31 1 4.5463 -1.2513 -0.0018 32 1 3.6157 -3.5644 -2.5607 33 1 3.5703 -1.9465 -1.8200 34 1 7.0301 -2.2716 -3.0398 35 1 2.8178 -5.4765 -1.0403 36 1 1.4927 -5.0530 0.0701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600823566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:46 Heat of formation + Delta-G solvation = -282.280886 kcal Electronic energy + Delta-G solvation = -30331.108627 eV Core-core repulsion = 25366.598595 eV Total energy + Delta-G solvation = -4964.510032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.06162 -48.58167 -48.54907 -43.97564 -41.05252 -40.68049 -37.26840 -37.05929 -34.85494 -34.41262 -33.18191 -31.10802 -29.22270 -28.61980 -25.59639 -24.99432 -24.41015 -23.24436 -22.07066 -20.57733 -19.68278 -19.51700 -19.09523 -18.95018 -18.64082 -18.06240 -17.89611 -17.36385 -16.91769 -16.48231 -16.35899 -16.15476 -15.68539 -15.46036 -15.41242 -14.99778 -14.81485 -14.72009 -14.70937 -14.49051 -14.42307 -14.32567 -14.03860 -13.87637 -13.44967 -13.31921 -13.10477 -12.90572 -12.82268 -12.74356 -12.67714 -12.19788 -12.12041 -11.76588 -11.26961 -11.01839 -10.58400 -9.88014 -9.70511 -8.24209 -6.37156 -0.30269 0.50142 1.19238 1.39037 1.45149 1.49287 1.52007 1.67973 1.93828 2.01997 2.18044 2.40409 2.87079 3.06355 3.09080 3.28435 3.49791 3.50885 3.94316 4.10520 4.22821 4.37376 4.40784 4.56551 4.60260 4.67576 4.69687 5.08916 5.15630 5.19181 5.33575 5.45940 5.68214 5.69285 5.98179 6.24722 6.72754 6.83249 7.00385 7.33888 8.81900 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.006093 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.842923 B = 4594.263640 C = 6862.560002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.113 3.887 3 O -0.138 6.138 4 C -0.106 4.106 5 C 0.581 3.419 6 O -0.521 6.521 7 O -0.494 6.494 8 C -0.053 4.053 9 C -0.265 4.265 10 C 0.599 3.401 11 O -0.556 6.556 12 N -0.592 5.592 13 C 0.246 3.754 14 C -0.546 4.546 15 H 0.063 0.937 16 C 0.034 3.966 17 N -0.908 5.908 18 Si 0.943 3.057 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.288 1.288 22 C 0.078 3.922 23 C 0.439 3.561 24 F -0.189 7.189 25 F -0.178 7.178 26 F -0.186 7.186 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.439 0.561 31 H 0.171 0.829 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.138 0.862 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 4.520 3.408 11.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 O -0.033 6.033 4 C -0.154 4.154 5 C 0.426 3.574 6 O -0.412 6.412 7 O -0.308 6.308 8 C -0.073 4.073 9 C -0.269 4.269 10 C 0.388 3.612 11 O -0.436 6.436 12 N -0.321 5.321 13 C 0.126 3.874 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.169 4.169 17 N -0.546 5.546 18 Si 0.769 3.231 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.214 1.214 22 C -0.048 4.048 23 C 0.383 3.617 24 F -0.170 7.170 25 F -0.159 7.159 26 F -0.168 7.168 27 H 0.134 0.866 28 H 0.120 0.880 29 H 0.128 0.872 30 H 0.302 0.698 31 H 0.189 0.811 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.039 4.372 3.604 11.528 hybrid contribution 1.863 -0.078 -0.219 1.878 sum -8.176 4.294 3.385 9.836 Atomic orbital electron populations 1.20800 0.80064 1.06710 1.05800 1.24071 0.95553 0.81832 0.92929 1.83929 1.15233 1.33944 1.70172 1.20392 0.81611 0.92352 1.21058 1.18635 0.85231 0.81430 0.72093 1.91047 1.23682 1.78519 1.47982 1.84590 1.44838 1.16281 1.85125 1.22706 0.99303 0.92767 0.92531 1.20272 0.93516 0.94636 1.18500 1.17306 0.80687 0.84294 0.78880 1.90696 1.31350 1.80255 1.41324 1.47896 1.32054 1.08838 1.43333 1.19408 0.81408 0.96453 0.90162 1.21580 0.90875 1.42302 1.03665 0.91887 1.25510 1.01656 0.94375 0.95329 1.70000 1.26714 1.41942 1.15956 0.85715 0.80250 0.77758 0.79348 1.18782 1.20134 1.21406 1.22625 0.98096 0.86612 0.97447 1.21365 0.81977 0.73487 0.84853 1.93190 1.82126 1.92497 1.49199 1.93168 1.89604 1.36425 1.96707 1.93164 1.58692 1.70206 1.94710 0.86582 0.88032 0.87197 0.69797 0.81137 0.95016 0.94965 0.92405 0.84453 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 9.91 71.24 0.71 -0.92 16 2 C 0.11 3.45 7.41 25.59 0.19 3.64 16 3 O -0.14 -4.39 10.61 -0.39 0.00 -4.39 16 4 C -0.11 -3.87 7.14 23.96 0.17 -3.70 16 5 C 0.58 19.81 8.31 70.00 0.58 20.39 16 6 O -0.52 -21.39 17.64 19.48 0.34 -21.05 16 7 O -0.49 -11.78 13.44 -56.43 -0.76 -12.54 16 8 C -0.05 -2.20 8.24 22.64 0.19 -2.01 16 9 C -0.27 -10.01 5.17 -20.08 -0.10 -10.11 16 10 C 0.60 23.33 7.05 86.68 0.61 23.94 16 11 O -0.56 -21.71 16.23 -4.01 -0.07 -21.78 16 12 N -0.59 -23.17 2.37 -829.97 -1.97 -25.14 16 13 C 0.25 11.26 4.52 85.63 0.39 11.65 16 14 C -0.55 -26.84 7.10 25.60 0.18 -26.66 16 15 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 16 C 0.03 1.73 5.43 84.65 0.46 2.19 16 17 N -0.91 -49.57 13.29 21.45 0.28 -49.29 16 18 Si 0.94 41.92 29.54 68.60 2.03 43.95 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 C 0.08 2.50 5.52 86.38 0.48 2.98 16 23 C 0.44 13.87 3.29 71.98 0.24 14.11 16 24 F -0.19 -6.69 15.88 44.97 0.71 -5.97 16 25 F -0.18 -5.04 17.32 44.97 0.78 -4.27 16 26 F -0.19 -6.15 16.88 44.97 0.76 -5.40 16 27 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.11 2.24 8.12 -2.39 -0.02 2.22 16 30 H 0.44 5.56 9.11 -74.05 -0.67 4.89 16 31 H 0.17 8.10 5.45 -2.91 -0.02 8.08 16 32 H 0.03 1.55 6.91 -2.38 -0.02 1.53 16 33 H 0.03 1.60 5.51 -2.39 -0.01 1.59 16 34 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.14 4.09 8.10 -2.39 -0.02 4.07 16 36 H 0.14 3.96 7.28 -2.39 -0.02 3.94 16 Total: -1.00 -65.12 336.48 6.70 -58.41 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.51 Total: 11.95 kcal Atomic # 6 Polarization: 31.41 SS G_CDS: 4.08 Total: 35.50 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.68 Total: -74.42 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -0.48 Total: -59.75 kcal Atomic # 9 Polarization: -17.89 SS G_CDS: 2.25 Total: -15.63 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -65.12 6.70 -58.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600823566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.868 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -288.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -282.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds