Wall clock time and date at job start Tue Mar 31 2020 18:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99512 * 2 1 4 4 H 1.48503 * 109.47252 * 90.00254 * 3 2 1 5 5 H 1.48499 * 109.47788 * 330.00073 * 3 2 1 6 6 H 1.48510 * 109.47105 * 210.00135 * 3 2 1 7 7 C 1.37872 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00156 * 185.94070 * 7 2 1 9 9 C 1.50703 * 119.99918 * 5.94364 * 7 2 1 10 10 C 1.53001 * 115.54870 * 278.88301 * 9 7 2 11 11 S 1.81400 * 109.47429 * 294.32765 * 10 9 7 12 12 O 1.42099 * 110.54178 * 285.62674 * 11 10 9 13 13 O 1.42099 * 110.54153 * 62.38100 * 11 10 9 14 14 N 1.65604 * 104.44872 * 174.00661 * 11 10 9 15 15 C 1.46498 * 119.99841 * 65.28091 * 14 11 10 16 16 C 1.50691 * 108.82957 * 52.44646 * 15 14 11 17 17 O 1.20827 * 120.00448 * 219.40498 * 16 15 14 18 18 O 1.34235 * 120.00199 * 39.40644 * 16 15 14 19 19 C 1.52331 * 108.87280 * 293.91174 * 15 14 11 20 20 C 1.54260 * 112.59072 * 239.18161 * 19 15 14 21 21 S 1.83959 * 102.57914 * 24.53103 * 20 19 15 22 22 C 1.54267 * 108.86495 * 170.83728 * 15 14 11 23 23 C 1.52996 * 117.49876 * 133.18098 * 9 7 2 24 24 C 1.52995 * 117.49979 * 64.55720 * 9 7 2 25 25 H 0.97006 * 119.99381 * 174.96738 * 1 2 3 26 26 H 1.09006 * 109.46856 * 54.33095 * 10 9 7 27 27 H 1.09002 * 109.46796 * 174.32134 * 10 9 7 28 28 H 0.97004 * 119.99647 * 245.28405 * 14 11 10 29 29 H 0.96707 * 117.00123 * 184.88566 * 18 16 15 30 30 H 1.09002 * 108.86326 * 359.97438 * 19 15 14 31 31 H 1.08995 * 108.86796 * 118.36426 * 19 15 14 32 32 H 1.09000 * 110.78427 * 142.79488 * 20 19 15 33 33 H 1.08995 * 110.79066 * 266.25712 * 20 19 15 34 34 H 1.09002 * 110.78735 * 214.56329 * 22 15 14 35 35 H 1.08998 * 110.78596 * 338.01934 * 22 15 14 36 36 H 1.09000 * 117.50316 * 359.97438 * 23 9 7 37 37 H 1.09006 * 117.49954 * 145.01819 * 23 9 7 38 38 H 1.09000 * 117.49973 * 214.97983 * 24 9 7 39 39 H 1.08999 * 117.49848 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4465 2.6528 -0.7000 6 1 3.5467 1.4403 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0802 -1.1965 0.0963 9 6 1.2572 -2.4956 -0.1363 10 6 0.6235 -3.0298 1.1498 11 16 1.9291 -3.4686 2.3303 12 8 2.5692 -4.6757 1.9399 13 8 2.6861 -2.3199 2.6863 14 7 1.1158 -3.8676 3.7165 15 6 0.2401 -5.0418 3.7398 16 6 1.0135 -6.2352 3.2413 17 8 0.4766 -7.0470 2.5253 18 8 2.2990 -6.3964 3.5926 19 6 -0.9397 -4.7952 2.8084 20 6 -2.2966 -4.8694 3.5384 21 16 -1.8385 -4.4776 5.2764 22 6 -0.1990 -5.3078 5.1946 23 6 1.7977 -3.5196 -1.1363 24 6 0.5132 -2.7494 -1.4488 25 1 -0.4849 -0.8369 -0.0737 26 1 -0.0171 -2.2627 1.5850 27 1 0.0280 -3.9137 0.9214 28 1 1.2191 -3.3236 4.5130 29 1 2.7744 -7.1365 3.1908 30 1 -0.8345 -3.8071 2.3603 31 1 -0.9249 -5.5427 2.0152 32 1 -2.9892 -4.1259 3.1440 33 1 -2.7204 -5.8710 3.4665 34 1 -0.2974 -6.3775 5.3795 35 1 0.4994 -4.8551 5.8983 36 1 2.6936 -3.2518 -1.6964 37 1 1.7020 -4.5743 -0.8780 38 1 -0.4276 -3.2973 -1.3962 39 1 0.5646 -1.9752 -2.2143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:56 Heat of formation + Delta-G solvation = -119.724325 kcal Electronic energy + Delta-G solvation = -26919.204174 eV Core-core repulsion = 23081.796686 eV Total energy + Delta-G solvation = -3837.407488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.83305 -37.50880 -37.14283 -36.50174 -36.05844 -35.33119 -32.34340 -32.05040 -29.83366 -28.47493 -26.03417 -25.04120 -23.42418 -21.51162 -20.64308 -19.71745 -19.25445 -18.18939 -17.60387 -17.41415 -16.95445 -16.75729 -15.77654 -15.59542 -15.13838 -14.96288 -14.41870 -14.15236 -13.90500 -13.76862 -13.59830 -13.49968 -12.96205 -12.61608 -12.33929 -12.18305 -12.01490 -11.73497 -11.58707 -11.40900 -11.37453 -11.26288 -11.13664 -10.97515 -10.80976 -10.76124 -10.50649 -10.30672 -10.12969 -9.84137 -9.59995 -8.74743 -8.56334 -8.39341 -8.00672 -6.49159 -4.27210 0.73869 1.42777 1.76318 2.07939 2.79104 3.04064 3.43900 3.45699 3.61777 3.82499 4.15537 4.33594 4.45110 4.51174 4.60238 4.71728 4.79185 4.88133 4.96487 5.11641 5.12323 5.29234 5.39689 5.43166 5.56694 5.63402 5.80083 5.93421 6.06348 6.23264 6.44364 6.48890 6.66095 6.87794 6.92777 7.08562 7.82361 7.97267 8.32713 8.72907 9.49767 10.90191 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.005122 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.012781 B = 5465.228316 C = 5917.537144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.582 4.582 8 H 0.064 0.936 9 C 0.022 3.978 10 C -0.578 4.578 11 S 2.604 3.396 12 O -0.962 6.962 13 O -0.928 6.928 14 N -1.111 6.111 15 C 0.198 3.802 16 C 0.480 3.520 17 O -0.508 6.508 18 O -0.483 6.483 19 C -0.180 4.180 20 C -0.057 4.057 21 S -0.265 6.265 22 C -0.064 4.064 23 C -0.198 4.198 24 C -0.162 4.162 25 H 0.274 0.726 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.423 0.577 29 H 0.413 0.587 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 -11.646 8.854 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.170 4.170 3 Si 0.894 3.106 4 H -0.209 1.209 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.619 4.619 8 H 0.082 0.918 9 C 0.020 3.980 10 C -0.710 4.710 11 S 2.701 3.299 12 O -0.952 6.952 13 O -0.918 6.918 14 N -0.869 5.869 15 C 0.104 3.896 16 C 0.318 3.682 17 O -0.395 6.395 18 O -0.292 6.292 19 C -0.219 4.219 20 C -0.206 4.206 21 S -0.038 6.038 22 C -0.213 4.213 23 C -0.235 4.235 24 C -0.201 4.201 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.125 0.875 28 H 0.259 0.741 29 H 0.272 0.728 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.227 -9.427 9.607 13.841 hybrid contribution 0.313 -2.524 -1.040 2.747 sum -2.914 -11.950 8.568 14.990 Atomic orbital electron populations 1.70761 1.06810 1.31484 1.44263 1.25813 0.96379 1.02484 0.92306 0.83575 0.74879 0.74800 0.77320 1.20878 1.20971 1.21127 1.21397 0.94727 0.89230 1.56500 0.91782 1.18584 0.99269 0.95855 0.84338 1.30507 1.16643 1.08914 1.14910 1.05330 0.76209 0.74289 0.74099 1.93503 1.72280 1.46816 1.82648 1.93604 1.66775 1.50578 1.80820 1.56352 1.62810 1.36028 1.31722 1.20412 0.89916 0.82926 0.96340 1.23217 0.81280 0.86472 0.77227 1.90692 1.70251 1.43815 1.34786 1.84456 1.23935 1.54295 1.66563 1.23287 0.91337 1.07538 0.99738 1.24134 0.98813 1.06047 0.91562 1.88131 1.20981 1.74818 1.19837 1.24384 0.97196 1.04589 0.95140 1.23099 0.98407 0.95761 1.06227 1.22809 0.93620 1.02224 1.01491 0.91495 0.84815 0.87538 0.74139 0.72755 0.86678 0.86934 0.86423 0.88300 0.87537 0.85384 0.89125 0.90463 0.91116 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 13.61 55.43 0.75 -24.22 16 2 C 0.04 1.00 5.42 -17.82 -0.10 0.90 16 3 Si 1.07 24.84 29.91 -169.99 -5.08 19.75 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.58 -15.60 7.69 -34.44 -0.26 -15.87 16 8 H 0.06 1.79 7.82 -52.49 -0.41 1.38 16 9 C 0.02 0.51 0.85 -155.66 -0.13 0.38 16 10 C -0.58 -11.35 3.85 37.16 0.14 -11.21 16 11 S 2.60 49.76 5.29 -107.50 -0.57 49.19 16 12 O -0.96 -19.04 14.03 -66.77 -0.94 -19.98 16 13 O -0.93 -21.47 17.13 -57.54 -0.99 -22.46 16 14 N -1.11 -15.78 5.14 -0.14 0.00 -15.78 16 15 C 0.20 2.50 0.95 -132.66 -0.13 2.37 16 16 C 0.48 6.75 5.07 36.00 0.18 6.93 16 17 O -0.51 -7.96 16.08 -18.75 -0.30 -8.26 16 18 O -0.48 -6.29 11.20 -46.95 -0.53 -6.82 16 19 C -0.18 -2.20 4.19 -26.41 -0.11 -2.31 16 20 C -0.06 -0.57 7.46 37.82 0.28 -0.29 16 21 S -0.26 -2.89 23.27 -107.50 -2.50 -5.40 16 22 C -0.06 -0.63 6.49 37.82 0.25 -0.39 16 23 C -0.20 -4.17 9.96 -26.73 -0.27 -4.44 16 24 C -0.16 -3.49 8.95 -26.73 -0.24 -3.72 16 25 H 0.27 7.35 6.10 -40.82 -0.25 7.11 16 26 H 0.13 2.68 7.18 -51.92 -0.37 2.30 16 27 H 0.11 1.77 5.92 -51.92 -0.31 1.46 16 28 H 0.42 5.18 8.32 -34.47 -0.29 4.89 16 29 H 0.41 3.96 9.11 45.56 0.41 4.37 16 30 H 0.12 1.50 4.08 -51.93 -0.21 1.29 16 31 H 0.11 1.41 6.26 -51.93 -0.32 1.09 16 32 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 0.91 7.84 -51.93 -0.41 0.50 16 35 H 0.13 1.07 7.73 -51.93 -0.40 0.67 16 36 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -34.07 337.04 -9.34 -43.41 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -3.89 Total: 13.11 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -0.38 Total: -27.64 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.75 Total: -39.99 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -2.75 Total: -57.51 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.75 kcal Atomic # 16 Polarization: 46.87 SS G_CDS: -3.07 Total: 43.80 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.07 -9.34 -43.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.313 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds