Wall clock time and date at job start Tue Mar 31 2020 18:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99512 * 2 1 4 4 H 1.48503 * 109.47252 * 90.00254 * 3 2 1 5 5 H 1.48499 * 109.47788 * 330.00073 * 3 2 1 6 6 H 1.48510 * 109.47105 * 210.00135 * 3 2 1 7 7 C 1.37872 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00156 * 185.94070 * 7 2 1 9 9 C 1.50703 * 119.99918 * 5.94364 * 7 2 1 10 10 C 1.53001 * 115.54870 * 278.88301 * 9 7 2 11 11 S 1.81400 * 109.47429 * 294.32765 * 10 9 7 12 12 O 1.42099 * 110.54178 * 285.62674 * 11 10 9 13 13 O 1.42099 * 110.54153 * 62.38100 * 11 10 9 14 14 N 1.65604 * 104.44872 * 174.00661 * 11 10 9 15 15 C 1.46498 * 119.99841 * 65.28091 * 14 11 10 16 16 C 1.50691 * 108.82957 * 52.44646 * 15 14 11 17 17 O 1.20827 * 120.00448 * 219.40498 * 16 15 14 18 18 O 1.34235 * 120.00199 * 39.40644 * 16 15 14 19 19 C 1.52331 * 108.87280 * 293.91174 * 15 14 11 20 20 C 1.54260 * 112.59072 * 239.18161 * 19 15 14 21 21 S 1.83959 * 102.57914 * 24.53103 * 20 19 15 22 22 C 1.54267 * 108.86495 * 170.83728 * 15 14 11 23 23 C 1.52996 * 117.49876 * 133.18098 * 9 7 2 24 24 C 1.52995 * 117.49979 * 64.55720 * 9 7 2 25 25 H 0.97006 * 119.99381 * 174.96738 * 1 2 3 26 26 H 1.09006 * 109.46856 * 54.33095 * 10 9 7 27 27 H 1.09002 * 109.46796 * 174.32134 * 10 9 7 28 28 H 0.97004 * 119.99647 * 245.28405 * 14 11 10 29 29 H 0.96707 * 117.00123 * 184.88566 * 18 16 15 30 30 H 1.09002 * 108.86326 * 359.97438 * 19 15 14 31 31 H 1.08995 * 108.86796 * 118.36426 * 19 15 14 32 32 H 1.09000 * 110.78427 * 142.79488 * 20 19 15 33 33 H 1.08995 * 110.79066 * 266.25712 * 20 19 15 34 34 H 1.09002 * 110.78735 * 214.56329 * 22 15 14 35 35 H 1.08998 * 110.78596 * 338.01934 * 22 15 14 36 36 H 1.09000 * 117.50316 * 359.97438 * 23 9 7 37 37 H 1.09006 * 117.49954 * 145.01819 * 23 9 7 38 38 H 1.09000 * 117.49973 * 214.97983 * 24 9 7 39 39 H 1.08999 * 117.49848 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4465 2.6528 -0.7000 6 1 3.5467 1.4403 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0802 -1.1965 0.0963 9 6 1.2572 -2.4956 -0.1363 10 6 0.6235 -3.0298 1.1498 11 16 1.9291 -3.4686 2.3303 12 8 2.5692 -4.6757 1.9399 13 8 2.6861 -2.3199 2.6863 14 7 1.1158 -3.8676 3.7165 15 6 0.2401 -5.0418 3.7398 16 6 1.0135 -6.2352 3.2413 17 8 0.4766 -7.0470 2.5253 18 8 2.2990 -6.3964 3.5926 19 6 -0.9397 -4.7952 2.8084 20 6 -2.2966 -4.8694 3.5384 21 16 -1.8385 -4.4776 5.2764 22 6 -0.1990 -5.3078 5.1946 23 6 1.7977 -3.5196 -1.1363 24 6 0.5132 -2.7494 -1.4488 25 1 -0.4849 -0.8369 -0.0737 26 1 -0.0171 -2.2627 1.5850 27 1 0.0280 -3.9137 0.9214 28 1 1.2191 -3.3236 4.5130 29 1 2.7744 -7.1365 3.1908 30 1 -0.8345 -3.8071 2.3603 31 1 -0.9249 -5.5427 2.0152 32 1 -2.9892 -4.1259 3.1440 33 1 -2.7204 -5.8710 3.4665 34 1 -0.2974 -6.3775 5.3795 35 1 0.4994 -4.8551 5.8983 36 1 2.6936 -3.2518 -1.6964 37 1 1.7020 -4.5743 -0.8780 38 1 -0.4276 -3.2973 -1.3962 39 1 0.5646 -1.9752 -2.2143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:55 Heat of formation + Delta-G solvation = -144.504646 kcal Electronic energy + Delta-G solvation = -26920.278729 eV Core-core repulsion = 23081.796686 eV Total energy + Delta-G solvation = -3838.482044 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90129 -38.99551 -38.46655 -38.06424 -37.19717 -36.91956 -34.06353 -33.37132 -30.91384 -29.87784 -27.14684 -26.89888 -24.41380 -23.21572 -22.07395 -21.16041 -20.59141 -19.36922 -18.88834 -18.78848 -18.49073 -17.83023 -17.14744 -16.88901 -16.48740 -16.12298 -15.78804 -15.66215 -15.47585 -15.07796 -14.75370 -14.63995 -14.45679 -14.01547 -13.69764 -13.40035 -13.15708 -13.09585 -13.06120 -12.95608 -12.81605 -12.67212 -12.49273 -12.42185 -12.27233 -12.21039 -12.08333 -11.93989 -11.56164 -11.25343 -10.77498 -10.62165 -10.51877 -10.19122 -8.83271 -8.58644 -6.35910 -0.76772 0.62170 0.80005 1.16290 1.54221 1.60025 1.65274 1.78388 1.87186 2.54508 2.73578 2.93423 3.08706 3.12424 3.19798 3.30130 3.63051 3.72518 3.80288 3.93797 3.99000 4.07906 4.26617 4.34252 4.38711 4.42584 4.54246 4.64372 4.69444 4.76172 4.76736 4.97254 5.20822 5.37149 5.49675 5.80523 6.02771 6.19412 6.67080 6.84621 7.44145 8.82951 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.005122 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.012781 B = 5465.228316 C = 5917.537144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 1.094 2.906 4 H -0.278 1.278 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.593 4.593 8 H 0.041 0.959 9 C -0.010 4.010 10 C -0.573 4.573 11 S 2.621 3.379 12 O -0.971 6.971 13 O -0.975 6.975 14 N -1.097 6.097 15 C 0.194 3.806 16 C 0.478 3.522 17 O -0.526 6.526 18 O -0.486 6.486 19 C -0.185 4.185 20 C -0.050 4.050 21 S -0.287 6.287 22 C -0.056 4.056 23 C -0.189 4.189 24 C -0.156 4.156 25 H 0.272 0.728 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.433 0.567 29 H 0.427 0.573 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -12.879 9.607 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.205 4.205 3 Si 0.918 3.082 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.630 4.630 8 H 0.059 0.941 9 C -0.012 4.012 10 C -0.705 4.705 11 S 2.717 3.283 12 O -0.961 6.961 13 O -0.965 6.965 14 N -0.859 5.859 15 C 0.101 3.899 16 C 0.317 3.683 17 O -0.415 6.415 18 O -0.298 6.298 19 C -0.224 4.224 20 C -0.198 4.198 21 S -0.060 6.060 22 C -0.205 4.205 23 C -0.226 4.226 24 C -0.195 4.195 25 H 0.083 0.917 26 H 0.145 0.855 27 H 0.155 0.845 28 H 0.271 0.729 29 H 0.288 0.712 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.990 -10.669 10.358 15.396 hybrid contribution 0.578 -2.243 -1.259 2.636 sum -3.413 -12.912 9.099 16.160 Atomic orbital electron populations 1.70825 1.07115 1.31475 1.45906 1.26761 0.96711 1.04988 0.92077 0.83225 0.74642 0.72663 0.77701 1.20418 1.20160 1.20124 1.21554 0.93958 0.91328 1.56206 0.94108 1.18664 1.00685 0.95502 0.86330 1.30420 1.16822 1.09853 1.13404 1.04572 0.75974 0.73287 0.74504 1.93484 1.72798 1.46601 1.83237 1.93543 1.68591 1.52557 1.81807 1.55865 1.62839 1.36717 1.30467 1.20670 0.89442 0.81467 0.98300 1.23435 0.81456 0.86560 0.76844 1.90686 1.70620 1.44603 1.35586 1.84434 1.23705 1.55074 1.66597 1.23298 0.92397 1.06751 0.99983 1.24193 0.97743 1.07518 0.90336 1.88261 1.21738 1.75269 1.20691 1.24469 0.96719 1.05838 0.93473 1.23144 0.98099 0.96462 1.04916 1.22787 0.94949 1.01920 0.99848 0.91726 0.85450 0.84521 0.72869 0.71184 0.87703 0.87036 0.85454 0.86461 0.85631 0.83737 0.89663 0.88320 0.88464 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.11 13.61 21.45 0.29 -50.82 16 2 C 0.00 -0.16 5.42 84.65 0.46 0.30 16 3 Si 1.09 50.19 29.91 68.60 2.05 52.25 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.59 -32.24 7.69 25.60 0.20 -32.04 16 8 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 9 C -0.01 -0.44 0.85 -52.93 -0.04 -0.49 16 10 C -0.57 -21.98 3.85 71.98 0.28 -21.71 16 11 S 2.62 98.21 5.29 -56.49 -0.30 97.91 16 12 O -0.97 -37.23 14.03 -118.82 -1.67 -38.90 16 13 O -0.97 -45.53 17.13 -127.65 -2.19 -47.72 16 14 N -1.10 -29.47 5.14 -154.37 -0.79 -30.26 16 15 C 0.19 4.47 0.95 3.06 0.00 4.47 16 16 C 0.48 12.38 5.07 71.23 0.36 12.74 16 17 O -0.53 -15.32 16.08 21.96 0.35 -14.97 16 18 O -0.49 -11.69 11.20 -44.12 -0.49 -12.19 16 19 C -0.18 -4.10 4.19 30.80 0.13 -3.97 16 20 C -0.05 -0.87 7.46 72.41 0.54 -0.33 16 21 S -0.29 -5.60 23.27 -56.49 -1.31 -6.91 16 22 C -0.06 -0.95 6.49 72.41 0.47 -0.48 16 23 C -0.19 -7.78 9.96 30.59 0.30 -7.47 16 24 C -0.16 -6.55 8.95 30.59 0.27 -6.28 16 25 H 0.27 14.63 6.10 -92.70 -0.57 14.06 16 26 H 0.13 5.06 7.18 -2.39 -0.02 5.04 16 27 H 0.14 4.28 5.92 -2.39 -0.01 4.27 16 28 H 0.43 9.96 8.32 -96.74 -0.81 9.16 16 29 H 0.43 7.38 9.11 -74.05 -0.67 6.70 16 30 H 0.10 2.55 4.08 -2.39 -0.01 2.54 16 31 H 0.11 2.53 6.26 -2.39 -0.01 2.52 16 32 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.13 1.73 7.84 -2.39 -0.02 1.71 16 35 H 0.14 1.99 7.73 -2.39 -0.02 1.97 16 36 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.10 3.61 8.14 -2.38 -0.02 3.59 16 38 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 39 H 0.07 3.24 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -72.57 337.04 -1.24 -73.82 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.16 Total: 33.04 kcal Atomic # 6 Polarization: -58.23 SS G_CDS: 2.97 Total: -55.26 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -0.50 Total: -81.08 kcal Atomic # 8 Polarization: -109.78 SS G_CDS: -3.99 Total: -113.77 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.25 kcal Atomic # 16 Polarization: 92.61 SS G_CDS: -1.61 Total: 91.00 kcal Total: -72.57 -1.24 -73.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.687 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds