Wall clock time and date at job start Tue Mar 31 2020 18:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99750 * 2 1 4 4 H 1.48500 * 109.46814 * 90.00257 * 3 2 1 5 5 H 1.48490 * 109.47307 * 330.00044 * 3 2 1 6 6 H 1.48499 * 109.46957 * 210.00152 * 3 2 1 7 7 C 1.37877 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00176 * 186.70672 * 7 2 1 9 9 C 1.50706 * 120.00020 * 6.71254 * 7 2 1 10 10 C 1.52993 * 115.55081 * 275.04485 * 9 7 2 11 11 S 1.81402 * 109.47136 * 294.54944 * 10 9 7 12 12 O 1.42103 * 110.53741 * 284.82403 * 11 10 9 13 13 O 1.42099 * 110.54200 * 61.56847 * 11 10 9 14 14 N 1.65595 * 104.45057 * 173.19663 * 11 10 9 15 15 C 1.46507 * 119.99809 * 64.44758 * 14 11 10 16 16 C 1.50695 * 108.84863 * 308.52088 * 15 14 11 17 17 O 1.20823 * 119.99938 * 135.55620 * 16 15 14 18 18 O 1.34231 * 120.00394 * 315.54934 * 16 15 14 19 19 C 1.52939 * 108.88904 * 67.09910 * 15 14 11 20 20 C 1.54830 * 109.12850 * 90.64842 * 19 15 14 21 21 S 1.83989 * 100.88001 * 41.43268 * 20 19 15 22 22 C 1.53711 * 108.88196 * 189.94453 * 15 14 11 23 23 C 1.52999 * 117.49989 * 129.37073 * 9 7 2 24 24 C 1.53001 * 117.49843 * 60.71170 * 9 7 2 25 25 H 0.97001 * 120.00156 * 175.33687 * 1 2 3 26 26 H 1.09001 * 109.47120 * 54.54401 * 10 9 7 27 27 H 1.09002 * 109.47332 * 174.54608 * 10 9 7 28 28 H 0.96998 * 120.00264 * 244.44613 * 14 11 10 29 29 H 0.96699 * 117.00074 * 179.97438 * 18 16 15 30 30 H 1.08997 * 109.60352 * 210.62097 * 19 15 14 31 31 H 1.08997 * 109.60349 * 330.76281 * 19 15 14 32 32 H 1.08999 * 111.12315 * 283.54203 * 20 19 15 33 33 H 1.09005 * 111.16916 * 159.34194 * 20 19 15 34 34 H 1.08996 * 110.34713 * 0.90451 * 22 15 14 35 35 H 1.08998 * 110.33932 * 123.16049 * 22 15 14 36 36 H 1.09009 * 117.49782 * 0.02562 * 23 9 7 37 37 H 1.08995 * 117.49900 * 145.01727 * 23 9 7 38 38 H 1.08994 * 117.50089 * 214.97698 * 24 9 7 39 39 H 1.09007 * 117.49912 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 1.4465 2.6526 -0.7000 6 1 3.5465 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0790 -1.1973 0.1087 9 6 1.2588 -2.4947 -0.1537 10 6 0.6883 -3.0842 1.1377 11 16 2.0495 -3.5540 2.2410 12 8 2.6701 -4.7487 1.7862 13 8 2.8227 -2.4146 2.5920 14 7 1.3042 -3.9927 3.6531 15 6 0.4165 -5.1578 3.6816 16 6 -0.5948 -5.0265 2.5721 17 8 -0.8555 -5.9793 1.8764 18 8 -1.2062 -3.8511 2.3568 19 6 1.2480 -6.4197 3.4468 20 6 1.7237 -6.9751 4.8115 21 16 0.2051 -6.7513 5.8259 22 6 -0.3235 -5.1866 5.0286 23 6 1.7584 -3.4745 -1.2172 24 6 0.4560 -2.7015 -1.4396 25 1 -0.4850 -0.8373 -0.0683 26 1 0.0613 -2.3411 1.6304 27 1 0.0910 -3.9651 0.9022 28 1 1.4555 -3.4783 4.4615 29 1 -1.8470 -3.8155 1.6335 30 1 0.6402 -7.1691 2.9398 31 1 2.1141 -6.1776 2.8310 32 1 2.5513 -6.3869 5.2081 33 1 1.9937 -8.0284 4.7354 34 1 -0.0316 -4.3326 5.6397 35 1 -1.4016 -5.1883 4.8686 36 1 2.6268 -3.1786 -1.8060 37 1 1.6804 -4.5391 -0.9971 38 1 -0.4783 -3.2580 -1.3657 39 1 0.4676 -1.8971 -2.1751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:59 Heat of formation + Delta-G solvation = -113.506076 kcal Electronic energy + Delta-G solvation = -27058.264105 eV Core-core repulsion = 23221.126260 eV Total energy + Delta-G solvation = -3837.137845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18149 -37.73470 -37.11889 -36.49108 -36.40418 -35.41941 -32.18946 -32.03871 -29.70367 -28.48476 -26.13004 -25.02652 -23.42624 -21.52018 -20.67803 -20.01517 -19.18087 -18.36984 -17.67730 -17.61313 -16.96219 -16.90591 -15.99675 -15.71959 -15.15706 -14.96649 -14.60049 -14.13550 -13.82646 -13.77246 -13.62315 -13.21551 -12.91613 -12.81226 -12.54780 -12.32149 -12.07510 -11.79959 -11.76741 -11.53029 -11.48054 -11.27964 -11.04875 -10.84235 -10.82702 -10.74801 -10.47737 -10.16609 -10.14289 -9.89672 -9.67102 -8.73829 -8.52968 -8.41490 -8.01413 -6.50195 -4.27402 0.68595 1.42353 1.62354 1.96632 2.54557 2.98786 3.42622 3.44125 3.60642 3.86756 4.13155 4.31790 4.43612 4.51980 4.62363 4.71090 4.79400 4.87710 4.92971 5.09164 5.14492 5.34144 5.36195 5.43488 5.68887 5.79678 5.93957 6.05551 6.08692 6.21195 6.27884 6.43939 6.66775 6.80302 6.93767 7.08109 7.54473 7.96879 8.32696 8.72600 9.49354 10.89680 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.004662 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.754267 B = 6005.135084 C = 6224.795457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.037 3.963 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.582 4.582 8 H 0.064 0.936 9 C 0.019 3.981 10 C -0.562 4.562 11 S 2.598 3.402 12 O -0.969 6.969 13 O -0.927 6.927 14 N -1.114 6.114 15 C 0.201 3.799 16 C 0.456 3.544 17 O -0.484 6.484 18 O -0.498 6.498 19 C -0.173 4.173 20 C -0.057 4.057 21 S -0.278 6.278 22 C -0.067 4.067 23 C -0.200 4.200 24 C -0.159 4.159 25 H 0.274 0.726 26 H 0.146 0.854 27 H 0.096 0.904 28 H 0.422 0.578 29 H 0.419 0.581 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 -10.530 8.953 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.170 4.170 3 Si 0.895 3.105 4 H -0.210 1.210 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.619 4.619 8 H 0.082 0.918 9 C 0.017 3.983 10 C -0.695 4.695 11 S 2.695 3.305 12 O -0.959 6.959 13 O -0.917 6.917 14 N -0.873 5.873 15 C 0.107 3.893 16 C 0.294 3.706 17 O -0.369 6.369 18 O -0.311 6.311 19 C -0.212 4.212 20 C -0.205 4.205 21 S -0.052 6.052 22 C -0.216 4.216 23 C -0.238 4.238 24 C -0.198 4.198 25 H 0.085 0.915 26 H 0.164 0.836 27 H 0.114 0.886 28 H 0.257 0.743 29 H 0.280 0.720 30 H 0.127 0.873 31 H 0.162 0.838 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.787 -9.946 9.767 14.054 hybrid contribution -0.651 -0.681 -1.161 1.496 sum -2.438 -10.627 8.606 13.891 Atomic orbital electron populations 1.70750 1.06813 1.31494 1.44254 1.25796 0.96377 1.02425 0.92355 0.83571 0.74902 0.74805 0.77258 1.20965 1.21001 1.21137 1.21393 0.94879 0.89263 1.56361 0.91754 1.18668 0.99720 0.95954 0.83986 1.30560 1.16595 1.08930 1.13453 1.05505 0.76821 0.74186 0.73945 1.93398 1.73849 1.47281 1.81330 1.93606 1.66402 1.50968 1.80752 1.56331 1.62687 1.38401 1.29870 1.20558 0.87327 0.88923 0.92446 1.23601 0.81919 0.80945 0.84165 1.90763 1.61605 1.39283 1.45279 1.84785 1.55149 1.34870 1.56341 1.23466 1.03472 0.95262 0.99025 1.24315 0.96241 1.05637 0.94285 1.87871 1.32267 1.31221 1.53847 1.24222 1.03878 0.99387 0.94139 1.23152 0.98690 0.95944 1.05999 1.22770 0.93021 1.01942 1.02085 0.91459 0.83617 0.88610 0.74250 0.71961 0.87253 0.83814 0.88371 0.86564 0.86431 0.86836 0.89084 0.90517 0.91273 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 13.57 55.43 0.75 -23.84 16 2 C 0.04 1.00 5.39 -17.82 -0.10 0.90 16 3 Si 1.07 24.55 29.91 -169.99 -5.08 19.47 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.58 -15.46 7.66 -34.44 -0.26 -15.72 16 8 H 0.06 1.79 7.82 -52.49 -0.41 1.38 16 9 C 0.02 0.44 0.90 -155.66 -0.14 0.30 16 10 C -0.56 -10.92 3.62 37.15 0.13 -10.79 16 11 S 2.60 48.99 5.19 -107.50 -0.56 48.43 16 12 O -0.97 -19.13 14.78 -57.54 -0.85 -19.98 16 13 O -0.93 -21.00 17.07 -57.54 -0.98 -21.99 16 14 N -1.11 -15.22 5.31 -0.12 0.00 -15.22 16 15 C 0.20 2.52 0.96 -132.63 -0.13 2.39 16 16 C 0.46 6.20 4.15 36.00 0.15 6.35 16 17 O -0.48 -7.51 16.02 -18.75 -0.30 -7.81 16 18 O -0.50 -6.06 9.23 -39.26 -0.36 -6.42 16 19 C -0.17 -2.19 5.15 -25.80 -0.13 -2.32 16 20 C -0.06 -0.58 7.51 38.12 0.29 -0.29 16 21 S -0.28 -2.99 23.22 -107.50 -2.50 -5.48 16 22 C -0.07 -0.67 6.73 37.53 0.25 -0.42 16 23 C -0.20 -4.25 9.96 -26.69 -0.27 -4.52 16 24 C -0.16 -3.39 8.68 -26.69 -0.23 -3.63 16 25 H 0.27 7.22 6.26 -40.82 -0.26 6.96 16 26 H 0.15 2.86 6.78 -51.92 -0.35 2.50 16 27 H 0.10 1.63 4.85 -51.92 -0.25 1.38 16 28 H 0.42 4.75 8.12 -34.47 -0.28 4.47 16 29 H 0.42 3.83 8.95 45.56 0.41 4.24 16 30 H 0.11 1.41 6.75 -51.93 -0.35 1.06 16 31 H 0.14 2.12 4.66 -51.93 -0.24 1.88 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.12 0.98 7.41 -51.93 -0.38 0.59 16 35 H 0.11 1.04 7.63 -51.93 -0.40 0.64 16 36 H 0.09 1.92 8.14 -51.92 -0.42 1.49 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -33.14 334.40 -9.13 -42.27 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -3.85 Total: 13.29 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -0.43 Total: -27.75 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.75 Total: -39.06 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -2.50 Total: -56.20 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.47 kcal Atomic # 16 Polarization: 46.00 SS G_CDS: -3.05 Total: 42.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.14 -9.13 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.241 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds