Wall clock time and date at job start Tue Mar 31 2020 18:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99750 * 2 1 4 4 H 1.48500 * 109.46814 * 90.00257 * 3 2 1 5 5 H 1.48490 * 109.47307 * 330.00044 * 3 2 1 6 6 H 1.48499 * 109.46957 * 210.00152 * 3 2 1 7 7 C 1.37877 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00176 * 186.70672 * 7 2 1 9 9 C 1.50706 * 120.00020 * 6.71254 * 7 2 1 10 10 C 1.52993 * 115.55081 * 275.04485 * 9 7 2 11 11 S 1.81402 * 109.47136 * 294.54944 * 10 9 7 12 12 O 1.42103 * 110.53741 * 284.82403 * 11 10 9 13 13 O 1.42099 * 110.54200 * 61.56847 * 11 10 9 14 14 N 1.65595 * 104.45057 * 173.19663 * 11 10 9 15 15 C 1.46507 * 119.99809 * 64.44758 * 14 11 10 16 16 C 1.50695 * 108.84863 * 308.52088 * 15 14 11 17 17 O 1.20823 * 119.99938 * 135.55620 * 16 15 14 18 18 O 1.34231 * 120.00394 * 315.54934 * 16 15 14 19 19 C 1.52939 * 108.88904 * 67.09910 * 15 14 11 20 20 C 1.54830 * 109.12850 * 90.64842 * 19 15 14 21 21 S 1.83989 * 100.88001 * 41.43268 * 20 19 15 22 22 C 1.53711 * 108.88196 * 189.94453 * 15 14 11 23 23 C 1.52999 * 117.49989 * 129.37073 * 9 7 2 24 24 C 1.53001 * 117.49843 * 60.71170 * 9 7 2 25 25 H 0.97001 * 120.00156 * 175.33687 * 1 2 3 26 26 H 1.09001 * 109.47120 * 54.54401 * 10 9 7 27 27 H 1.09002 * 109.47332 * 174.54608 * 10 9 7 28 28 H 0.96998 * 120.00264 * 244.44613 * 14 11 10 29 29 H 0.96699 * 117.00074 * 179.97438 * 18 16 15 30 30 H 1.08997 * 109.60352 * 210.62097 * 19 15 14 31 31 H 1.08997 * 109.60349 * 330.76281 * 19 15 14 32 32 H 1.08999 * 111.12315 * 283.54203 * 20 19 15 33 33 H 1.09005 * 111.16916 * 159.34194 * 20 19 15 34 34 H 1.08996 * 110.34713 * 0.90451 * 22 15 14 35 35 H 1.08998 * 110.33932 * 123.16049 * 22 15 14 36 36 H 1.09009 * 117.49782 * 0.02562 * 23 9 7 37 37 H 1.08995 * 117.49900 * 145.01727 * 23 9 7 38 38 H 1.08994 * 117.50089 * 214.97698 * 24 9 7 39 39 H 1.09007 * 117.49912 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 1.4465 2.6526 -0.7000 6 1 3.5465 1.4402 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0790 -1.1973 0.1087 9 6 1.2588 -2.4947 -0.1537 10 6 0.6883 -3.0842 1.1377 11 16 2.0495 -3.5540 2.2410 12 8 2.6701 -4.7487 1.7862 13 8 2.8227 -2.4146 2.5920 14 7 1.3042 -3.9927 3.6531 15 6 0.4165 -5.1578 3.6816 16 6 -0.5948 -5.0265 2.5721 17 8 -0.8555 -5.9793 1.8764 18 8 -1.2062 -3.8511 2.3568 19 6 1.2480 -6.4197 3.4468 20 6 1.7237 -6.9751 4.8115 21 16 0.2051 -6.7513 5.8259 22 6 -0.3235 -5.1866 5.0286 23 6 1.7584 -3.4745 -1.2172 24 6 0.4560 -2.7015 -1.4396 25 1 -0.4850 -0.8373 -0.0683 26 1 0.0613 -2.3411 1.6304 27 1 0.0910 -3.9651 0.9022 28 1 1.4555 -3.4783 4.4615 29 1 -1.8470 -3.8155 1.6335 30 1 0.6402 -7.1691 2.9398 31 1 2.1141 -6.1776 2.8310 32 1 2.5513 -6.3869 5.2081 33 1 1.9937 -8.0284 4.7354 34 1 -0.0316 -4.3326 5.6397 35 1 -1.4016 -5.1883 4.8686 36 1 2.6268 -3.1786 -1.8060 37 1 1.6804 -4.5391 -0.9971 38 1 -0.4783 -3.2580 -1.3657 39 1 0.4676 -1.8971 -2.1751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:58 Heat of formation + Delta-G solvation = -137.855221 kcal Electronic energy + Delta-G solvation = -27059.319963 eV Core-core repulsion = 23221.126260 eV Total energy + Delta-G solvation = -3838.193703 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25059 -39.07180 -38.63223 -37.99031 -37.49737 -37.01090 -34.02512 -33.22745 -30.62546 -30.06649 -27.13111 -26.97539 -24.38785 -23.22929 -22.02575 -21.51460 -20.53488 -19.49550 -19.02665 -18.78507 -18.69701 -17.83710 -17.31806 -16.99031 -16.62247 -16.11508 -15.85153 -15.69959 -15.58176 -14.86971 -14.76758 -14.63378 -14.39398 -13.99219 -13.80965 -13.64564 -13.27294 -13.13056 -13.06588 -13.05226 -12.77217 -12.66492 -12.63191 -12.40580 -12.38029 -12.10009 -11.98496 -11.93379 -11.54367 -11.06704 -10.95081 -10.60496 -10.48354 -10.16997 -8.82365 -8.57193 -6.33837 -0.80336 0.56455 0.61162 1.11650 1.54121 1.55606 1.61250 1.71776 1.79784 2.55271 2.66620 2.97410 3.06710 3.12976 3.17095 3.34342 3.66929 3.74248 3.76147 3.84223 4.05090 4.10486 4.26240 4.30567 4.36423 4.50691 4.57360 4.65423 4.75378 4.84600 4.97657 5.02842 5.21360 5.27231 5.36174 5.78706 6.03927 6.21440 6.58191 6.69437 7.45892 8.85247 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.004662 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.754267 B = 6005.135084 C = 6224.795457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.001 4.001 3 Si 1.095 2.905 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.594 4.594 8 H 0.040 0.960 9 C -0.009 4.009 10 C -0.558 4.558 11 S 2.612 3.388 12 O -0.980 6.980 13 O -0.971 6.971 14 N -1.097 6.097 15 C 0.198 3.802 16 C 0.455 3.545 17 O -0.505 6.505 18 O -0.497 6.497 19 C -0.176 4.176 20 C -0.052 4.052 21 S -0.287 6.287 22 C -0.063 4.063 23 C -0.196 4.196 24 C -0.151 4.151 25 H 0.273 0.727 26 H 0.144 0.856 27 H 0.120 0.880 28 H 0.435 0.565 29 H 0.432 0.568 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -11.296 10.018 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.204 4.204 3 Si 0.919 3.081 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.631 4.631 8 H 0.058 0.942 9 C -0.012 4.012 10 C -0.690 4.690 11 S 2.709 3.291 12 O -0.970 6.970 13 O -0.961 6.961 14 N -0.860 5.860 15 C 0.105 3.895 16 C 0.294 3.706 17 O -0.392 6.392 18 O -0.312 6.312 19 C -0.216 4.216 20 C -0.200 4.200 21 S -0.061 6.061 22 C -0.213 4.213 23 C -0.233 4.233 24 C -0.190 4.190 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.138 0.862 28 H 0.274 0.726 29 H 0.296 0.704 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.144 0.856 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.532 -10.705 10.827 15.435 hybrid contribution -0.439 -0.525 -1.490 1.639 sum -2.971 -11.230 9.337 14.904 Atomic orbital electron populations 1.70811 1.07075 1.31563 1.45722 1.26722 0.96711 1.04837 0.92087 0.83209 0.74562 0.72669 0.77699 1.20332 1.20259 1.20350 1.21527 0.94068 0.91300 1.56237 0.94152 1.18741 1.00944 0.95546 0.85923 1.30456 1.16942 1.09650 1.11983 1.04806 0.76540 0.73251 0.74489 1.93403 1.74352 1.47150 1.82075 1.93550 1.67999 1.52822 1.81732 1.55801 1.62583 1.38907 1.28681 1.20764 0.87032 0.88028 0.93676 1.23787 0.81896 0.80891 0.84022 1.90762 1.62425 1.39968 1.46025 1.84758 1.55388 1.34166 1.56890 1.23430 1.02621 0.95304 1.00231 1.24374 0.96149 1.06919 0.92543 1.87954 1.32665 1.31658 1.53841 1.24304 1.04328 0.99923 0.92713 1.23193 0.98542 0.96626 1.04969 1.22739 0.94197 1.01538 1.00545 0.91578 0.83795 0.86199 0.72639 0.70391 0.87580 0.85777 0.87449 0.84747 0.84329 0.85568 0.89642 0.88716 0.88592 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 13.57 21.45 0.29 -49.64 16 2 C 0.00 -0.04 5.39 84.66 0.46 0.42 16 3 Si 1.09 49.40 29.91 68.60 2.05 51.46 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.59 -31.88 7.66 25.60 0.20 -31.69 16 8 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 9 C -0.01 -0.42 0.90 -52.93 -0.05 -0.47 16 10 C -0.56 -21.07 3.62 71.98 0.26 -20.81 16 11 S 2.61 96.72 5.19 -56.49 -0.29 96.42 16 12 O -0.98 -38.04 14.78 -127.65 -1.89 -39.93 16 13 O -0.97 -44.21 17.07 -127.65 -2.18 -46.39 16 14 N -1.10 -28.11 5.31 -154.30 -0.82 -28.93 16 15 C 0.20 4.54 0.96 3.07 0.00 4.54 16 16 C 0.46 11.45 4.15 71.23 0.30 11.75 16 17 O -0.50 -14.75 16.02 21.97 0.35 -14.40 16 18 O -0.50 -11.01 9.23 -51.42 -0.47 -11.49 16 19 C -0.18 -4.16 5.15 31.20 0.16 -4.00 16 20 C -0.05 -0.94 7.51 72.61 0.55 -0.39 16 21 S -0.29 -5.45 23.22 -56.49 -1.31 -6.76 16 22 C -0.06 -1.10 6.73 72.22 0.49 -0.61 16 23 C -0.20 -8.16 9.96 30.62 0.30 -7.86 16 24 C -0.15 -6.32 8.68 30.62 0.27 -6.05 16 25 H 0.27 14.30 6.26 -92.71 -0.58 13.72 16 26 H 0.14 5.49 6.78 -2.39 -0.02 5.48 16 27 H 0.12 3.86 4.85 -2.39 -0.01 3.85 16 28 H 0.43 8.92 8.12 -96.75 -0.79 8.14 16 29 H 0.43 6.93 8.95 -74.06 -0.66 6.27 16 30 H 0.11 2.59 6.75 -2.39 -0.02 2.57 16 31 H 0.12 3.51 4.66 -2.39 -0.01 3.50 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.14 1.84 7.41 -2.39 -0.02 1.82 16 35 H 0.13 1.92 7.63 -2.39 -0.02 1.90 16 36 H 0.09 3.60 8.14 -2.38 -0.02 3.58 16 37 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -70.62 334.40 -1.48 -72.11 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.14 Total: 32.73 kcal Atomic # 6 Polarization: -58.11 SS G_CDS: 2.93 Total: -55.18 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -0.53 Total: -78.57 kcal Atomic # 8 Polarization: -108.02 SS G_CDS: -4.19 Total: -112.20 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.46 kcal Atomic # 16 Polarization: 91.27 SS G_CDS: -1.61 Total: 89.66 kcal Total: -70.62 -1.48 -72.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.748 kcal (2) G-P(sol) polarization free energy of solvation -70.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds