Wall clock time and date at job start Tue Mar 31 2020 19:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99940 * 2 1 4 4 H 1.48498 * 109.46719 * 239.99848 * 3 2 1 5 5 H 1.48494 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47068 * 120.00245 * 3 2 1 7 7 C 1.37876 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00024 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47385 * 179.97438 * 9 7 2 11 11 C 1.46507 * 119.99638 * 269.99424 * 10 9 7 12 12 C 1.52997 * 109.47414 * 272.33506 * 11 10 9 13 13 F 1.39903 * 109.46574 * 60.00625 * 12 11 10 14 14 F 1.39904 * 109.47104 * 179.97438 * 12 11 10 15 15 F 1.39895 * 109.47276 * 300.00541 * 12 11 10 16 16 C 1.34777 * 120.00330 * 89.99533 * 10 9 7 17 17 O 1.21608 * 119.99609 * 3.82146 * 16 10 9 18 18 C 1.47383 * 119.99972 * 183.81254 * 16 10 9 19 19 C 1.47016 * 127.19350 * 245.15798 * 18 16 10 20 20 C 1.34177 * 105.95156 * 179.97438 * 19 18 16 21 21 O 1.34204 * 109.12607 * 0.27291 * 20 19 18 22 22 C 1.33662 * 110.91157 * 359.54174 * 21 20 19 23 23 C 1.50695 * 125.80194 * 180.14997 * 22 21 20 24 24 C 1.50700 * 109.47099 * 266.50888 * 23 22 21 25 25 O 1.20825 * 120.00062 * 0.02562 * 24 23 22 26 26 O 1.34225 * 120.00062 * 180.02562 * 24 23 22 27 27 H 0.97006 * 119.99545 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47664 * 59.99157 * 9 7 2 29 29 H 1.09003 * 109.46991 * 299.99899 * 9 7 2 30 30 H 1.09003 * 109.47240 * 32.34409 * 11 10 9 31 31 H 1.09010 * 109.46736 * 152.33805 * 11 10 9 32 32 H 1.08003 * 127.02167 * 359.97438 * 19 18 16 33 33 H 1.08005 * 125.43164 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.47520 * 26.51187 * 23 22 21 35 35 H 1.09002 * 109.46943 * 146.51629 * 23 22 21 36 36 H 0.96703 * 116.99998 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6788 -4.1695 -1.2683 12 6 1.7159 -5.2611 -1.7393 13 9 0.4416 -4.7127 -1.9195 14 9 2.1701 -5.7924 -2.9512 15 9 1.6553 -6.2759 -0.7782 16 6 2.6410 -4.1248 1.1677 17 8 2.1939 -3.7098 2.2197 18 6 3.6616 -5.1881 1.1690 19 6 3.4987 -6.5758 1.6263 20 6 4.6877 -7.1683 1.4374 21 8 5.5463 -6.2761 0.9198 22 6 4.9547 -5.0902 0.7457 23 6 5.6075 -3.8535 0.1842 24 6 6.1419 -3.0107 1.3135 25 8 6.0071 -3.3771 2.4569 26 8 6.7678 -1.8532 1.0490 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.7261 -3.3788 -2.0171 31 1 3.6718 -4.5967 -1.1279 32 1 2.6047 -7.0263 2.0315 33 1 4.9183 -8.1975 1.6697 34 1 6.4274 -4.1420 -0.4734 35 1 4.8729 -3.2798 -0.3810 36 1 7.0930 -1.3470 1.8061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:05 Heat of formation + Delta-G solvation = -254.489490 kcal Electronic energy + Delta-G solvation = -30891.393020 eV Core-core repulsion = 25928.088113 eV Total energy + Delta-G solvation = -4963.304907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.80088 -47.35840 -47.23705 -42.60334 -40.10619 -39.04349 -36.13705 -35.39935 -33.38915 -32.58769 -32.29273 -29.35850 -28.23903 -26.90425 -24.02620 -23.34547 -22.38586 -21.85046 -20.70756 -19.02197 -18.32130 -18.25738 -18.08384 -17.76080 -16.96813 -16.86194 -16.28508 -16.09880 -15.80743 -15.56820 -15.33152 -14.49018 -14.29585 -14.15310 -14.09724 -14.03655 -13.72892 -13.45049 -13.42149 -13.23672 -13.07848 -12.82410 -12.80982 -12.42922 -12.30894 -11.98633 -11.73461 -11.46249 -11.33183 -11.05436 -10.69752 -10.63381 -10.31285 -9.87228 -9.72574 -9.33986 -8.64985 -8.52819 -8.11033 -6.15124 -4.21978 1.42747 2.18997 2.30357 2.61446 2.78418 3.17934 3.25100 3.30270 3.31066 3.34153 3.46448 4.08571 4.23990 4.26286 4.35163 4.42840 4.76586 4.81374 5.07465 5.10484 5.13444 5.19737 5.23308 5.44306 5.53346 5.71237 5.93502 6.31733 6.48559 6.80280 7.00509 7.18454 7.30914 7.77981 7.85846 7.96758 8.05946 8.64184 8.82165 9.43563 10.93096 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.009514 B = 0.006536 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.368960 B = 4282.923580 C = 6132.749140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.242 3.758 10 N -0.591 5.591 11 C 0.066 3.934 12 C 0.430 3.570 13 F -0.174 7.174 14 F -0.188 7.188 15 F -0.182 7.182 16 C 0.582 3.418 17 O -0.504 6.504 18 C -0.185 4.185 19 C -0.167 4.167 20 C -0.029 4.029 21 O -0.169 6.169 22 C 0.021 3.979 23 C -0.043 4.043 24 C 0.482 3.518 25 O -0.496 6.496 26 O -0.511 6.511 27 H 0.266 0.734 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.158 0.842 33 H 0.210 0.790 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -11.946 -4.585 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.076 0.924 9 C 0.124 3.876 10 N -0.324 5.324 11 C -0.062 4.062 12 C 0.374 3.626 13 F -0.155 7.155 14 F -0.170 7.170 15 F -0.163 7.163 16 C 0.368 3.632 17 O -0.378 6.378 18 C -0.190 4.190 19 C -0.187 4.187 20 C -0.095 4.095 21 O -0.066 6.066 22 C -0.031 4.031 23 C -0.080 4.080 24 C 0.323 3.677 25 O -0.383 6.383 26 O -0.324 6.324 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.149 0.851 31 H 0.126 0.874 32 H 0.175 0.825 33 H 0.226 0.774 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 11.225 -11.960 -4.069 16.899 hybrid contribution 0.218 0.955 0.497 1.099 sum 11.443 -11.004 -3.572 16.272 Atomic orbital electron populations 1.69922 1.06018 1.27414 1.49260 1.24914 0.94879 0.99229 0.94714 0.86551 0.79563 0.82611 0.78692 1.19999 1.21082 1.20177 1.21290 0.93206 0.90400 1.52657 0.92392 1.19572 0.87158 0.81193 0.99692 1.48192 1.46625 1.35347 1.02206 1.22752 0.96112 0.95883 0.91458 1.21509 0.82429 0.83684 0.74948 1.93223 1.42025 1.85198 1.95096 1.93153 1.88962 1.87956 1.46909 1.93177 1.96595 1.62811 1.63741 1.17325 0.81183 0.80515 0.84169 1.90817 1.56609 1.59768 1.30561 1.21476 0.94913 0.96357 1.06242 1.22687 0.99512 0.91775 1.04726 1.23829 0.88360 0.95048 1.02296 1.83647 1.40218 1.18182 1.64534 1.21384 0.91160 0.86159 1.04364 1.19784 1.03413 0.89058 0.95734 1.22835 0.74991 0.79892 0.90006 1.90795 1.53321 1.71005 1.23141 1.84465 1.69379 1.33950 1.44560 0.92414 0.93716 0.93098 0.85057 0.87350 0.82483 0.77351 0.85040 0.84142 0.72623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -14.21 9.39 -34.44 -0.32 -14.53 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.24 6.00 4.98 -5.20 -0.03 5.97 16 10 N -0.59 -11.95 2.32 -176.34 -0.41 -12.36 16 11 C 0.07 1.00 4.45 -4.04 -0.02 0.98 16 12 C 0.43 6.60 3.29 37.16 0.12 6.73 16 13 F -0.17 -3.08 16.00 2.25 0.04 -3.05 16 14 F -0.19 -2.56 17.32 2.25 0.04 -2.52 16 15 F -0.18 -2.88 15.63 2.25 0.04 -2.84 16 16 C 0.58 12.41 6.90 -12.54 -0.09 12.32 16 17 O -0.50 -13.16 16.66 5.27 0.09 -13.07 16 18 C -0.19 -3.18 4.23 -103.28 -0.44 -3.62 16 19 C -0.17 -2.40 10.60 -37.46 -0.40 -2.80 16 20 C -0.03 -0.33 12.03 29.30 0.35 0.02 16 21 O -0.17 -2.20 10.52 7.66 0.08 -2.12 16 22 C 0.02 0.30 4.72 -34.97 -0.16 0.14 16 23 C -0.04 -0.53 5.64 -29.04 -0.16 -0.69 16 24 C 0.48 7.11 8.32 36.01 0.30 7.41 16 25 O -0.50 -9.24 16.79 -18.75 -0.31 -9.56 16 26 O -0.51 -6.11 13.42 -39.24 -0.53 -6.64 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.04 1.12 7.04 -51.93 -0.37 0.76 16 29 H 0.05 1.46 7.37 -51.93 -0.38 1.07 16 30 H 0.13 1.80 8.09 -51.93 -0.42 1.38 16 31 H 0.11 1.35 4.35 -51.92 -0.23 1.13 16 32 H 0.16 2.07 8.06 -52.48 -0.42 1.64 16 33 H 0.21 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.14 1.75 6.19 -51.93 -0.32 1.43 16 36 H 0.41 3.36 9.10 45.56 0.41 3.78 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -36.35 335.34 -3.26 -39.60 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.11 Total: 2.78 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: -0.94 Total: 13.63 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.33 Total: -37.09 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.67 Total: -31.39 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.11 Total: -8.41 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.35 -3.26 -39.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.887 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds