Wall clock time and date at job start Tue Mar 31 2020 19:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99940 * 2 1 4 4 H 1.48498 * 109.46719 * 239.99848 * 3 2 1 5 5 H 1.48494 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47068 * 120.00245 * 3 2 1 7 7 C 1.37876 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00024 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47385 * 179.97438 * 9 7 2 11 11 C 1.46507 * 119.99638 * 269.99424 * 10 9 7 12 12 C 1.52997 * 109.47414 * 272.33506 * 11 10 9 13 13 F 1.39903 * 109.46574 * 60.00625 * 12 11 10 14 14 F 1.39904 * 109.47104 * 179.97438 * 12 11 10 15 15 F 1.39895 * 109.47276 * 300.00541 * 12 11 10 16 16 C 1.34777 * 120.00330 * 89.99533 * 10 9 7 17 17 O 1.21608 * 119.99609 * 3.82146 * 16 10 9 18 18 C 1.47383 * 119.99972 * 183.81254 * 16 10 9 19 19 C 1.47016 * 127.19350 * 245.15798 * 18 16 10 20 20 C 1.34177 * 105.95156 * 179.97438 * 19 18 16 21 21 O 1.34204 * 109.12607 * 0.27291 * 20 19 18 22 22 C 1.33662 * 110.91157 * 359.54174 * 21 20 19 23 23 C 1.50695 * 125.80194 * 180.14997 * 22 21 20 24 24 C 1.50700 * 109.47099 * 266.50888 * 23 22 21 25 25 O 1.20825 * 120.00062 * 0.02562 * 24 23 22 26 26 O 1.34225 * 120.00062 * 180.02562 * 24 23 22 27 27 H 0.97006 * 119.99545 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47664 * 59.99157 * 9 7 2 29 29 H 1.09003 * 109.46991 * 299.99899 * 9 7 2 30 30 H 1.09003 * 109.47240 * 32.34409 * 11 10 9 31 31 H 1.09010 * 109.46736 * 152.33805 * 11 10 9 32 32 H 1.08003 * 127.02167 * 359.97438 * 19 18 16 33 33 H 1.08005 * 125.43164 * 179.97438 * 20 19 18 34 34 H 1.08999 * 109.47520 * 26.51187 * 23 22 21 35 35 H 1.09002 * 109.46943 * 146.51629 * 23 22 21 36 36 H 0.96703 * 116.99998 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6788 -4.1695 -1.2683 12 6 1.7159 -5.2611 -1.7393 13 9 0.4416 -4.7127 -1.9195 14 9 2.1701 -5.7924 -2.9512 15 9 1.6553 -6.2759 -0.7782 16 6 2.6410 -4.1248 1.1677 17 8 2.1939 -3.7098 2.2197 18 6 3.6616 -5.1881 1.1690 19 6 3.4987 -6.5758 1.6263 20 6 4.6877 -7.1683 1.4374 21 8 5.5463 -6.2761 0.9198 22 6 4.9547 -5.0902 0.7457 23 6 5.6075 -3.8535 0.1842 24 6 6.1419 -3.0107 1.3135 25 8 6.0071 -3.3771 2.4569 26 8 6.7678 -1.8532 1.0490 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.7261 -3.3788 -2.0171 31 1 3.6718 -4.5967 -1.1279 32 1 2.6047 -7.0263 2.0315 33 1 4.9183 -8.1975 1.6697 34 1 6.4274 -4.1420 -0.4734 35 1 4.8729 -3.2798 -0.3810 36 1 7.0930 -1.3470 1.8061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066891.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:04 Heat of formation + Delta-G solvation = -280.731946 kcal Electronic energy + Delta-G solvation = -30892.530978 eV Core-core repulsion = 25928.088113 eV Total energy + Delta-G solvation = -4964.442865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.06908 -48.57974 -48.56317 -43.67709 -41.22420 -40.68570 -37.22197 -37.10017 -35.04410 -34.12498 -33.33603 -30.94783 -29.58121 -28.44118 -25.72610 -24.73203 -23.58095 -23.16025 -21.90377 -20.37936 -19.55471 -19.48816 -19.23653 -19.11520 -18.54891 -18.09903 -17.79531 -17.40871 -17.24110 -16.73459 -16.63025 -16.20384 -15.74413 -15.49900 -15.45920 -15.22343 -14.99272 -14.74008 -14.70736 -14.47509 -14.41401 -14.18063 -14.04444 -13.81758 -13.67394 -13.47908 -13.19918 -12.91729 -12.85460 -12.58823 -12.56571 -12.23243 -11.84769 -11.79639 -11.21720 -10.76577 -10.62529 -9.91925 -9.66637 -8.23085 -6.37972 0.30257 1.08546 1.17080 1.39859 1.40967 1.44446 1.51064 1.58782 1.89908 1.97667 2.23680 2.40528 2.81663 3.00046 3.07295 3.15287 3.27773 3.53837 3.89603 3.93744 4.00700 4.18665 4.22146 4.25152 4.54454 4.66237 4.84654 4.98318 5.17023 5.30769 5.35175 5.52321 5.71429 5.95459 5.98728 6.28732 6.69142 6.86588 7.03639 7.33190 8.85281 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.009514 B = 0.006536 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.368960 B = 4282.923580 C = 6132.749140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.251 1.251 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.258 3.742 10 N -0.591 5.591 11 C 0.063 3.937 12 C 0.434 3.566 13 F -0.192 7.192 14 F -0.172 7.172 15 F -0.184 7.184 16 C 0.582 3.418 17 O -0.571 6.571 18 C -0.222 4.222 19 C -0.199 4.199 20 C 0.004 3.996 21 O -0.160 6.160 22 C 0.032 3.968 23 C -0.048 4.048 24 C 0.482 3.518 25 O -0.545 6.545 26 O -0.503 6.503 27 H 0.267 0.733 28 H 0.038 0.962 29 H -0.001 1.001 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.262 0.738 34 H 0.185 0.815 35 H 0.141 0.859 36 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.716 -12.822 -6.329 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.174 1.174 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.139 3.861 10 N -0.322 5.322 11 C -0.063 4.063 12 C 0.379 3.621 13 F -0.173 7.173 14 F -0.153 7.153 15 F -0.166 7.166 16 C 0.372 3.628 17 O -0.449 6.449 18 C -0.227 4.227 19 C -0.219 4.219 20 C -0.062 4.062 21 O -0.056 6.056 22 C -0.020 4.020 23 C -0.084 4.084 24 C 0.325 3.675 25 O -0.435 6.435 26 O -0.316 6.316 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.018 0.982 30 H 0.167 0.833 31 H 0.160 0.840 32 H 0.176 0.824 33 H 0.278 0.722 34 H 0.202 0.798 35 H 0.158 0.842 36 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 14.396 -12.854 -5.880 20.175 hybrid contribution -0.736 1.150 1.037 1.714 sum 13.660 -11.704 -4.844 18.629 Atomic orbital electron populations 1.70062 1.07757 1.28327 1.50453 1.25846 0.95682 1.03063 0.94263 0.85495 0.78325 0.77920 0.79299 1.17449 1.21006 1.20472 1.21618 0.93692 0.91054 1.51968 0.91523 1.19021 0.87518 0.82778 0.96831 1.47996 1.45668 1.34306 1.04194 1.23090 0.97317 0.96469 0.89388 1.21407 0.81648 0.83673 0.75413 1.93195 1.43388 1.85538 1.95222 1.93185 1.88629 1.87679 1.45827 1.93179 1.96550 1.62855 1.63968 1.17942 0.81118 0.80552 0.83233 1.90767 1.59201 1.62106 1.32853 1.21246 0.95203 0.96543 1.09666 1.22856 1.01310 0.90981 1.06721 1.24732 0.86520 0.96167 0.98768 1.83706 1.40030 1.17754 1.64077 1.21583 0.90110 0.87227 1.03064 1.20046 1.05028 0.87839 0.95489 1.23303 0.74146 0.80236 0.89844 1.90786 1.55402 1.72231 1.25128 1.84437 1.68663 1.33125 1.45418 0.92392 0.94357 0.98240 0.83251 0.84019 0.82423 0.72189 0.79780 0.84177 0.70807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 2 C 0.01 0.61 5.46 84.65 0.46 1.08 16 3 Si 0.97 42.60 29.54 68.60 2.03 44.63 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -29.31 9.39 25.60 0.24 -29.07 16 8 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.26 13.41 4.98 85.63 0.43 13.84 16 10 N -0.59 -24.36 2.32 -830.07 -1.93 -26.29 16 11 C 0.06 1.83 4.45 86.38 0.38 2.21 16 12 C 0.43 12.89 3.29 71.98 0.24 13.12 16 13 F -0.19 -6.86 16.00 44.97 0.72 -6.14 16 14 F -0.17 -4.27 17.32 44.97 0.78 -3.49 16 15 F -0.18 -5.70 15.63 44.97 0.70 -5.00 16 16 C 0.58 25.66 6.90 86.65 0.60 26.26 16 17 O -0.57 -31.78 16.66 -4.05 -0.07 -31.84 16 18 C -0.22 -7.50 4.23 -18.99 -0.08 -7.58 16 19 C -0.20 -5.45 10.60 23.65 0.25 -5.20 16 20 C 0.00 0.08 12.03 66.89 0.80 0.88 16 21 O -0.16 -3.53 10.52 4.49 0.05 -3.49 16 22 C 0.03 0.86 4.72 25.26 0.12 0.98 16 23 C -0.05 -1.03 5.64 29.10 0.16 -0.87 16 24 C 0.48 13.34 8.32 71.24 0.59 13.93 16 25 O -0.55 -20.08 16.79 21.97 0.37 -19.71 16 26 O -0.50 -10.84 13.42 -51.37 -0.69 -11.53 16 27 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 28 H 0.04 2.01 7.04 -2.39 -0.02 2.00 16 29 H 0.00 -0.03 7.37 -2.39 -0.02 -0.05 16 30 H 0.15 3.81 8.09 -2.39 -0.02 3.79 16 31 H 0.14 3.16 4.35 -2.38 -0.01 3.15 16 32 H 0.16 4.14 8.06 -2.91 -0.02 4.11 16 33 H 0.26 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.18 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.14 3.09 6.19 -2.39 -0.01 3.08 16 36 H 0.43 6.17 9.10 -74.06 -0.67 5.50 16 Total: -1.00 -84.44 335.34 6.95 -77.49 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.51 Total: 10.18 kcal Atomic # 6 Polarization: 25.38 SS G_CDS: 4.20 Total: 29.58 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.64 Total: -80.68 kcal Atomic # 8 Polarization: -66.23 SS G_CDS: -0.34 Total: -66.57 kcal Atomic # 9 Polarization: -16.82 SS G_CDS: 2.20 Total: -14.62 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -84.44 6.95 -77.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066891.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.246 kcal (2) G-P(sol) polarization free energy of solvation -84.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds