Wall clock time and date at job start Tue Mar 31 2020 18:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00070 * 2 1 4 4 H 1.48508 * 109.47110 * 270.00014 * 3 2 1 5 5 H 1.48501 * 109.47266 * 30.00021 * 3 2 1 6 6 H 1.48502 * 109.47205 * 150.00083 * 3 2 1 7 7 C 1.38979 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99988 * 190.17093 * 7 2 1 9 9 N 1.36975 * 119.99697 * 10.17511 * 7 2 1 10 10 C 1.46498 * 120.00154 * 46.64976 * 9 7 2 11 11 C 1.53007 * 109.47167 * 95.36867 * 10 9 7 12 12 C 1.50692 * 109.46942 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00529 * 0.02562 * 12 11 10 14 14 O 1.34232 * 120.00005 * 179.97438 * 12 11 10 15 15 C 1.34781 * 119.99628 * 226.64434 * 9 7 2 16 16 O 1.21654 * 119.99633 * 185.76873 * 15 9 7 17 17 C 1.47143 * 120.00014 * 5.78010 * 15 9 7 18 18 C 1.38101 * 126.82392 * 6.63465 * 17 15 9 19 19 N 1.34119 * 107.87430 * 179.84164 * 18 17 15 20 20 H 0.96999 * 125.14629 * 180.13242 * 19 18 17 21 21 N 1.39763 * 109.69999 * 0.43941 * 19 18 17 22 22 C 1.31379 * 109.10503 * 359.72597 * 21 19 18 23 23 C 1.48258 * 126.51762 * 179.97438 * 22 21 19 24 24 C 1.39406 * 122.78353 * 324.76602 * 23 22 21 25 25 C 1.33037 * 114.91920 * 179.82456 * 24 23 22 26 26 S 1.75811 * 109.94678 * 0.41824 * 25 24 23 27 27 C 1.34643 * 122.78079 * 145.04830 * 23 22 21 28 28 H 0.97000 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47107 * 335.36720 * 10 9 7 30 30 H 1.09002 * 109.47127 * 215.36556 * 10 9 7 31 31 H 1.09002 * 109.46843 * 299.99862 * 11 10 9 32 32 H 1.08997 * 109.47226 * 59.99926 * 11 10 9 33 33 H 0.96701 * 117.00071 * 180.02562 * 14 12 11 34 34 H 1.07997 * 126.06453 * 359.97438 * 18 17 15 35 35 H 1.08004 * 122.54059 * 0.02562 * 24 23 22 36 36 H 1.08004 * 125.02550 * 180.19749 * 25 24 23 37 37 H 1.08004 * 125.22609 * 359.97062 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0090 -1.2036 0.0005 8 1 3.0762 -1.2109 0.1657 9 7 1.3402 -2.3806 -0.2085 10 6 0.3754 -2.4900 -1.3055 11 6 1.0629 -3.0959 -2.5308 12 6 0.0703 -3.2090 -3.6590 13 8 -1.0699 -2.8423 -3.4997 14 8 0.4531 -3.7163 -4.8413 15 6 1.5699 -3.4380 0.5950 16 8 1.0567 -4.5128 0.3474 17 6 2.4411 -3.2922 1.7719 18 6 2.9892 -2.1207 2.2560 19 7 3.7145 -2.4238 3.3426 20 1 4.2074 -1.7850 3.8810 21 7 3.6582 -3.8004 3.5777 22 6 2.9051 -4.3629 2.6599 23 6 2.5856 -5.8060 2.5436 24 6 3.4969 -6.8095 2.8692 25 6 3.0448 -8.0505 2.7096 26 16 1.3930 -8.0145 2.1086 27 6 1.3931 -6.2560 2.1096 28 1 -0.4850 0.8401 0.0004 29 1 -0.0050 -1.4995 -1.5550 30 1 -0.4518 -3.1304 -0.9993 31 1 1.8901 -2.4555 -2.8370 32 1 1.4433 -4.0864 -2.2813 33 1 -0.2188 -3.7686 -5.5348 34 1 2.8555 -1.1350 1.8355 35 1 4.4932 -6.5957 3.2272 36 1 3.6102 -8.9474 2.9152 37 1 0.5642 -5.6326 1.8083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:36 Heat of formation + Delta-G solvation = -6.559959 kcal Electronic energy + Delta-G solvation = -26442.944974 eV Core-core repulsion = 22507.293460 eV Total energy + Delta-G solvation = -3935.651513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46655 -39.79939 -38.16516 -37.29642 -35.78968 -34.96524 -32.16131 -31.23644 -31.03399 -29.24166 -28.52292 -25.45820 -24.31943 -23.91971 -21.70477 -21.07570 -20.26983 -19.25181 -18.22342 -17.97182 -17.63070 -16.95857 -16.18101 -15.91620 -15.78195 -15.38053 -14.93766 -14.52589 -14.25256 -14.20480 -13.46642 -13.24351 -13.07200 -12.72694 -12.59118 -12.48286 -12.11254 -11.97062 -11.90110 -11.71364 -11.27796 -11.18036 -11.14729 -10.82570 -10.58388 -10.54331 -10.35824 -10.15753 -10.09710 -9.41346 -9.17064 -8.68310 -8.20582 -8.09090 -7.72099 -7.53987 -6.54338 -4.39065 1.39493 2.03549 2.26793 2.38498 2.50329 2.67181 2.96185 3.04335 3.07799 3.31824 3.43726 3.55935 3.89309 4.43931 4.72902 4.84081 5.14889 5.34668 5.59152 5.62043 5.72303 5.81330 6.00228 6.01899 6.19268 6.33471 6.34261 6.41973 6.43339 6.76817 6.82609 6.85985 6.91834 7.07992 7.15957 7.30837 7.74494 7.83724 8.10377 8.18969 8.30966 8.86361 9.39743 9.82557 10.46514 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.005069 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.537611 B = 5522.438009 C = 7978.872609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.048 3.952 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.352 4.352 8 H 0.092 0.908 9 N -0.437 5.437 10 C 0.140 3.860 11 C -0.127 4.127 12 C 0.483 3.517 13 O -0.516 6.516 14 O -0.525 6.525 15 C 0.557 3.443 16 O -0.597 6.597 17 C -0.252 4.252 18 C 0.110 3.890 19 N -0.485 5.485 20 H 0.434 0.566 21 N -0.309 5.309 22 C 0.176 3.824 23 C -0.057 4.057 24 C -0.102 4.102 25 C -0.239 4.239 26 S 0.078 5.922 27 C -0.119 4.119 28 H 0.274 0.726 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.401 0.599 34 H 0.217 0.783 35 H 0.137 0.863 36 H 0.159 0.841 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 -5.209 0.733 7.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.161 4.161 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.481 4.481 8 H 0.110 0.890 9 N -0.155 5.155 10 C 0.016 3.984 11 C -0.166 4.166 12 C 0.325 3.675 13 O -0.403 6.403 14 O -0.336 6.336 15 C 0.348 3.652 16 O -0.484 6.484 17 C -0.267 4.267 18 C -0.037 4.037 19 N -0.191 5.191 20 H 0.277 0.723 21 N -0.130 5.130 22 C 0.004 3.996 23 C -0.070 4.070 24 C -0.133 4.133 25 C -0.373 4.373 26 S 0.339 5.661 27 C -0.257 4.257 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.258 0.742 34 H 0.233 0.767 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.520 -6.738 1.598 8.270 hybrid contribution 0.883 2.630 -0.661 2.852 sum 5.403 -4.108 0.938 6.852 Atomic orbital electron populations 1.69845 1.06106 1.28242 1.43876 1.25610 0.95368 0.99784 0.95366 0.86221 0.79412 0.81713 0.79117 1.19839 1.20572 1.19150 1.19440 0.92365 0.83272 1.52982 0.89029 1.43055 1.37884 1.10395 1.24128 1.21060 0.90700 1.02821 0.83835 1.21923 0.97795 1.04917 0.92000 1.23831 0.88768 0.72351 0.82516 1.90702 1.21592 1.45697 1.82332 1.84599 1.47675 1.77424 1.23949 1.17447 0.81658 0.84505 0.81554 1.90498 1.55726 1.27311 1.74845 1.21252 1.11260 0.91035 1.03112 1.24828 0.90294 1.02163 0.86454 1.46089 1.41860 1.06527 1.24590 0.72300 1.77079 1.24069 0.88661 1.23207 1.21281 0.94368 0.91884 0.92017 1.16640 0.94089 0.89242 1.07027 1.20060 1.00597 0.91154 1.01451 1.25210 0.99402 1.00905 1.11802 1.84109 1.12065 1.04493 1.65394 1.26641 1.02918 0.95718 1.00441 0.91494 0.87509 0.91795 0.87977 0.88020 0.74186 0.76739 0.84563 0.82355 0.78871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.54 11.55 55.50 0.64 -19.90 16 2 C 0.05 1.06 5.07 -17.46 -0.09 0.97 16 3 Si 0.91 16.90 29.56 -169.99 -5.03 11.88 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 7 C -0.35 -7.72 6.22 -14.98 -0.09 -7.81 16 8 H 0.09 1.89 6.15 -52.49 -0.32 1.57 16 9 N -0.44 -9.96 2.47 -116.12 -0.29 -10.25 16 10 C 0.14 3.13 4.09 -4.04 -0.02 3.11 16 11 C -0.13 -2.39 6.10 -27.88 -0.17 -2.56 16 12 C 0.48 8.58 8.33 36.00 0.30 8.88 16 13 O -0.52 -10.67 16.74 -18.75 -0.31 -10.98 16 14 O -0.52 -7.33 13.42 -39.26 -0.53 -7.85 16 15 C 0.56 12.82 7.57 -12.64 -0.10 12.73 16 16 O -0.60 -14.18 12.08 5.23 0.06 -14.12 16 17 C -0.25 -5.32 6.18 -102.95 -0.64 -5.95 16 18 C 0.11 2.01 10.18 -16.60 -0.17 1.84 16 19 N -0.48 -7.72 7.20 30.83 0.22 -7.50 16 20 H 0.43 5.06 8.96 -182.85 -1.64 3.42 16 21 N -0.31 -5.69 12.66 34.58 0.44 -5.25 16 22 C 0.18 3.51 7.08 -80.55 -0.57 2.94 16 23 C -0.06 -1.07 5.67 -106.61 -0.61 -1.67 16 24 C -0.10 -1.62 10.01 -40.95 -0.41 -2.03 16 25 C -0.24 -3.32 11.19 28.93 0.32 -3.00 16 26 S 0.08 1.15 23.32 -107.50 -2.51 -1.36 16 27 C -0.12 -2.21 9.16 29.46 0.27 -1.94 16 28 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 29 H 0.11 2.60 5.86 -51.93 -0.30 2.29 16 30 H 0.06 1.54 7.64 -51.93 -0.40 1.14 16 31 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 32 H 0.10 1.93 8.02 -51.93 -0.42 1.51 16 33 H 0.40 3.67 9.10 45.56 0.41 4.08 16 34 H 0.22 3.83 5.02 -52.49 -0.26 3.57 16 35 H 0.14 2.00 8.06 -52.48 -0.42 1.57 16 36 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.19 3.97 5.73 -52.48 -0.30 3.67 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -29.40 336.21 -7.82 -37.22 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -3.63 Total: 17.53 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.96 Total: 5.49 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 1.01 Total: -42.89 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.78 Total: -32.95 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.40 -7.82 -37.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.664 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds