Wall clock time and date at job start Tue Mar 31 2020 18:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00070 * 2 1 4 4 H 1.48508 * 109.47110 * 270.00014 * 3 2 1 5 5 H 1.48501 * 109.47266 * 30.00021 * 3 2 1 6 6 H 1.48502 * 109.47205 * 150.00083 * 3 2 1 7 7 C 1.38979 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99988 * 190.17093 * 7 2 1 9 9 N 1.36975 * 119.99697 * 10.17511 * 7 2 1 10 10 C 1.46498 * 120.00154 * 46.64976 * 9 7 2 11 11 C 1.53007 * 109.47167 * 95.36867 * 10 9 7 12 12 C 1.50692 * 109.46942 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00529 * 0.02562 * 12 11 10 14 14 O 1.34232 * 120.00005 * 179.97438 * 12 11 10 15 15 C 1.34781 * 119.99628 * 226.64434 * 9 7 2 16 16 O 1.21654 * 119.99633 * 185.76873 * 15 9 7 17 17 C 1.47143 * 120.00014 * 5.78010 * 15 9 7 18 18 C 1.38101 * 126.82392 * 6.63465 * 17 15 9 19 19 N 1.34119 * 107.87430 * 179.84164 * 18 17 15 20 20 H 0.96999 * 125.14629 * 180.13242 * 19 18 17 21 21 N 1.39763 * 109.69999 * 0.43941 * 19 18 17 22 22 C 1.31379 * 109.10503 * 359.72597 * 21 19 18 23 23 C 1.48258 * 126.51762 * 179.97438 * 22 21 19 24 24 C 1.39406 * 122.78353 * 324.76602 * 23 22 21 25 25 C 1.33037 * 114.91920 * 179.82456 * 24 23 22 26 26 S 1.75811 * 109.94678 * 0.41824 * 25 24 23 27 27 C 1.34643 * 122.78079 * 145.04830 * 23 22 21 28 28 H 0.97000 * 119.99906 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47107 * 335.36720 * 10 9 7 30 30 H 1.09002 * 109.47127 * 215.36556 * 10 9 7 31 31 H 1.09002 * 109.46843 * 299.99862 * 11 10 9 32 32 H 1.08997 * 109.47226 * 59.99926 * 11 10 9 33 33 H 0.96701 * 117.00071 * 180.02562 * 14 12 11 34 34 H 1.07997 * 126.06453 * 359.97438 * 18 17 15 35 35 H 1.08004 * 122.54059 * 0.02562 * 24 23 22 36 36 H 1.08004 * 125.02550 * 180.19749 * 25 24 23 37 37 H 1.08004 * 125.22609 * 359.97062 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0090 -1.2036 0.0005 8 1 3.0762 -1.2109 0.1657 9 7 1.3402 -2.3806 -0.2085 10 6 0.3754 -2.4900 -1.3055 11 6 1.0629 -3.0959 -2.5308 12 6 0.0703 -3.2090 -3.6590 13 8 -1.0699 -2.8423 -3.4997 14 8 0.4531 -3.7163 -4.8413 15 6 1.5699 -3.4380 0.5950 16 8 1.0567 -4.5128 0.3474 17 6 2.4411 -3.2922 1.7719 18 6 2.9892 -2.1207 2.2560 19 7 3.7145 -2.4238 3.3426 20 1 4.2074 -1.7850 3.8810 21 7 3.6582 -3.8004 3.5777 22 6 2.9051 -4.3629 2.6599 23 6 2.5856 -5.8060 2.5436 24 6 3.4969 -6.8095 2.8692 25 6 3.0448 -8.0505 2.7096 26 16 1.3930 -8.0145 2.1086 27 6 1.3931 -6.2560 2.1096 28 1 -0.4850 0.8401 0.0004 29 1 -0.0050 -1.4995 -1.5550 30 1 -0.4518 -3.1304 -0.9993 31 1 1.8901 -2.4555 -2.8370 32 1 1.4433 -4.0864 -2.2813 33 1 -0.2188 -3.7686 -5.5348 34 1 2.8555 -1.1350 1.8355 35 1 4.4932 -6.5957 3.2272 36 1 3.6102 -8.9474 2.9152 37 1 0.5642 -5.6326 1.8083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:35 Heat of formation + Delta-G solvation = -25.923146 kcal Electronic energy + Delta-G solvation = -26443.784624 eV Core-core repulsion = 22507.293460 eV Total energy + Delta-G solvation = -3936.491164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95134 -41.24497 -39.84561 -38.57802 -37.16584 -36.67023 -33.85963 -32.69217 -32.62928 -30.71345 -29.88580 -27.18108 -25.91407 -25.27683 -23.23017 -22.44302 -21.74342 -20.89472 -19.80281 -19.31453 -19.02577 -18.22044 -17.66371 -17.49062 -17.41799 -16.88853 -16.22909 -16.09297 -15.82160 -15.77892 -15.03129 -14.62888 -14.59723 -14.27081 -13.98167 -13.86516 -13.54356 -13.44436 -13.26295 -13.20030 -12.82833 -12.77306 -12.54140 -12.46641 -12.03591 -11.93039 -11.85536 -11.71000 -11.61742 -10.87350 -10.78230 -10.35378 -9.61048 -9.47475 -9.33765 -9.00799 -8.24531 -6.15291 0.08557 0.79646 0.87532 0.99219 1.16376 1.22408 1.50323 1.54861 1.63654 1.97581 2.07054 2.16991 2.34770 2.76899 3.12638 3.16912 3.75307 3.95790 4.06939 4.19232 4.34769 4.47768 4.52729 4.67998 4.73031 4.80595 4.87751 4.95158 5.06060 5.13210 5.36681 5.46221 5.48387 5.59257 5.62439 5.63742 6.11295 6.42967 6.46363 6.69482 7.03091 7.14029 7.66613 8.09488 8.77471 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.005069 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.537611 B = 5522.438009 C = 7978.872609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.010 3.990 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.239 1.239 7 C -0.355 4.355 8 H 0.108 0.892 9 N -0.447 5.447 10 C 0.148 3.852 11 C -0.118 4.118 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.509 6.509 15 C 0.544 3.456 16 O -0.615 6.615 17 C -0.290 4.290 18 C 0.127 3.873 19 N -0.461 5.461 20 H 0.455 0.545 21 N -0.308 5.308 22 C 0.163 3.837 23 C -0.070 4.070 24 C -0.122 4.122 25 C -0.214 4.214 26 S 0.118 5.882 27 C -0.156 4.156 28 H 0.272 0.728 29 H 0.086 0.914 30 H 0.032 0.968 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.426 0.574 34 H 0.224 0.776 35 H 0.150 0.850 36 H 0.199 0.801 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.896 -5.720 1.008 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.195 4.195 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.161 1.161 7 C -0.482 4.482 8 H 0.126 0.874 9 N -0.164 5.164 10 C 0.024 3.976 11 C -0.157 4.157 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.322 6.322 15 C 0.337 3.663 16 O -0.503 6.503 17 C -0.304 4.304 18 C -0.023 4.023 19 N -0.170 5.170 20 H 0.303 0.697 21 N -0.130 5.130 22 C -0.008 4.008 23 C -0.084 4.084 24 C -0.152 4.152 25 C -0.349 4.349 26 S 0.380 5.620 27 C -0.294 4.294 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.135 0.865 32 H 0.119 0.881 33 H 0.287 0.713 34 H 0.240 0.760 35 H 0.167 0.833 36 H 0.216 0.784 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.131 -7.267 1.873 10.352 hybrid contribution 0.064 2.687 -0.758 2.792 sum 7.194 -4.580 1.115 8.601 Atomic orbital electron populations 1.69997 1.08028 1.28817 1.45699 1.26388 0.95730 1.02812 0.94575 0.85211 0.79159 0.77112 0.78766 1.20391 1.21560 1.16132 1.19807 0.92994 0.82998 1.52450 0.87448 1.43237 1.37888 1.10897 1.24410 1.20783 0.90432 1.01069 0.85343 1.21676 0.97991 1.04725 0.91278 1.23442 0.87677 0.71798 0.83256 1.90701 1.22831 1.47420 1.83140 1.84514 1.48325 1.76139 1.23232 1.17852 0.81968 0.84359 0.82168 1.90488 1.56466 1.27958 1.75401 1.21300 1.12770 0.92790 1.03566 1.24722 0.89516 1.01502 0.86532 1.46064 1.40817 1.06253 1.23819 0.69748 1.77036 1.23759 0.89529 1.22703 1.21555 0.94543 0.92660 0.91998 1.16932 0.94742 0.89424 1.07298 1.20124 1.00926 0.91152 1.02978 1.25697 0.98707 1.01630 1.08869 1.83901 1.12655 1.00921 1.64542 1.26417 1.02467 0.98221 1.02317 0.91841 0.89588 0.94941 0.86537 0.88148 0.71266 0.76025 0.83287 0.78399 0.81923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.56 11.55 21.67 0.25 -44.31 16 2 C 0.01 0.44 5.07 84.93 0.43 0.87 16 3 Si 0.97 33.90 29.56 68.60 2.03 35.93 16 4 H -0.28 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.29 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.24 -7.15 7.11 99.48 0.71 -6.44 16 7 C -0.35 -15.57 6.22 84.07 0.52 -15.04 16 8 H 0.11 4.29 6.15 -2.91 -0.02 4.27 16 9 N -0.45 -21.02 2.47 -639.52 -1.58 -22.59 16 10 C 0.15 6.96 4.09 86.38 0.35 7.31 16 11 C -0.12 -4.51 6.10 29.85 0.18 -4.33 16 12 C 0.49 17.58 8.33 71.23 0.59 18.17 16 13 O -0.55 -23.31 16.74 21.97 0.37 -22.94 16 14 O -0.51 -13.32 13.42 -51.44 -0.69 -14.01 16 15 C 0.54 26.04 7.57 86.58 0.66 26.69 16 16 O -0.61 -30.87 12.08 -4.20 -0.05 -30.92 16 17 C -0.29 -12.38 6.18 -18.78 -0.12 -12.50 16 18 C 0.13 4.51 10.18 84.31 0.86 5.36 16 19 N -0.46 -13.83 7.20 -56.36 -0.41 -14.24 16 20 H 0.46 9.34 8.96 -213.54 -1.91 7.43 16 21 N -0.31 -11.00 12.66 -44.52 -0.56 -11.57 16 22 C 0.16 6.54 7.08 44.07 0.31 6.85 16 23 C -0.07 -2.63 5.67 -21.16 -0.12 -2.75 16 24 C -0.12 -3.68 10.01 21.39 0.21 -3.47 16 25 C -0.21 -5.36 11.19 66.66 0.75 -4.62 16 26 S 0.12 3.34 23.32 -56.49 -1.32 2.02 16 27 C -0.16 -5.94 9.16 67.00 0.61 -5.32 16 28 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 29 H 0.09 4.41 5.86 -2.39 -0.01 4.39 16 30 H 0.03 1.68 7.64 -2.39 -0.02 1.66 16 31 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 32 H 0.10 3.88 8.02 -2.39 -0.02 3.86 16 33 H 0.43 6.84 9.10 -74.06 -0.67 6.17 16 34 H 0.22 7.58 5.02 -2.91 -0.01 7.56 16 35 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.20 3.33 8.06 -2.91 -0.02 3.30 16 37 H 0.16 7.20 5.73 -2.91 -0.02 7.18 16 Total: -1.00 -66.48 336.21 1.88 -64.60 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -1.40 Total: 40.80 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 5.25 Total: 17.23 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -2.30 Total: -92.71 kcal Atomic # 8 Polarization: -67.50 SS G_CDS: -0.37 Total: -67.87 kcal Atomic # 14 Polarization: 33.90 SS G_CDS: 2.03 Total: 35.93 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.32 Total: 2.02 kcal Total: -66.48 1.88 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.676 kcal (2) G-P(sol) polarization free energy of solvation -66.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds