Wall clock time and date at job start Tue Mar 31 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35241 * 107.86078 * 179.83477 * 11 10 9 13 13 C 1.40421 * 107.86585 * 0.42772 * 12 11 10 14 14 N 1.40109 * 125.97270 * 179.70391 * 13 12 11 15 15 C 1.34779 * 120.00233 * 0.02562 * 14 13 12 16 16 O 1.21649 * 119.99935 * 0.02562 * 15 14 13 17 17 C 1.47172 * 119.99830 * 180.02562 * 15 14 13 18 18 C 1.44425 * 123.46240 * 359.70173 * 17 15 14 19 19 C 1.32779 * 113.08165 * 179.81298 * 18 17 15 20 20 S 1.75501 * 110.57646 * 0.44172 * 19 18 17 21 21 C 1.36016 * 123.45842 * 179.97438 * 17 15 14 22 22 C 1.50697 * 124.59539 * 359.97438 * 21 17 15 23 23 C 1.50699 * 109.47710 * 89.99423 * 22 21 17 24 24 O 1.20831 * 119.99731 * 0.02562 * 23 22 21 25 25 O 1.34223 * 120.00179 * 180.02562 * 23 22 21 26 26 N 1.31226 * 108.04953 * 359.73570 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.07995 * 126.07118 * 359.97438 * 11 10 9 31 31 H 1.07997 * 126.06717 * 180.12300 * 12 11 10 32 32 H 0.97002 * 119.99510 * 180.02562 * 14 13 12 33 33 H 1.07998 * 123.46313 * 0.02562 * 18 17 15 34 34 H 1.07999 * 124.70868 * 180.15243 * 19 18 17 35 35 H 1.09008 * 109.47184 * 209.99672 * 22 21 17 36 36 H 1.09006 * 109.46988 * 329.99211 * 22 21 17 37 37 H 0.96706 * 116.99809 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2625 -5.4440 0.5302 13 6 3.8668 -4.9132 -0.6208 14 7 4.9603 -5.4618 -1.3037 15 6 5.5265 -6.6028 -0.8632 16 8 5.0878 -7.1567 0.1270 17 6 6.6755 -7.1786 -1.5803 18 6 7.2519 -6.5879 -2.7655 19 6 8.2830 -7.2760 -3.2413 20 16 8.5851 -8.6957 -2.2548 21 6 7.3002 -8.3248 -1.1980 22 6 6.9093 -9.1544 -0.0023 23 6 5.8919 -10.1858 -0.4173 24 8 5.5226 -10.2418 -1.5664 25 8 5.3961 -11.0423 0.4895 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5912 -4.7503 1.7305 31 1 3.5582 -6.3462 1.0450 32 1 5.3099 -5.0203 -2.0935 33 1 6.8844 -5.6780 -3.2164 34 1 8.8534 -7.0026 -4.1166 35 1 7.7916 -9.6546 0.3971 36 1 6.4800 -8.5083 0.7636 37 1 4.7463 -11.6862 0.1758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:24 Heat of formation + Delta-G solvation = -10.429472 kcal Electronic energy + Delta-G solvation = -25270.077412 eV Core-core repulsion = 21334.258104 eV Total energy + Delta-G solvation = -3935.819308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94309 -40.44577 -39.57807 -37.22813 -36.27757 -35.01361 -33.72011 -32.63839 -30.97375 -29.42092 -28.34878 -26.43980 -24.91840 -23.05408 -22.17782 -21.93766 -20.91604 -20.16320 -19.07548 -18.35981 -17.65417 -17.20682 -17.12074 -16.68870 -16.26619 -15.91950 -15.46546 -15.25102 -14.69978 -14.10931 -13.88043 -13.79973 -13.60140 -13.52952 -13.28256 -13.09751 -12.75617 -12.48101 -12.25547 -12.09362 -11.83534 -11.67044 -11.38281 -11.17568 -10.84717 -10.81938 -10.50708 -10.17126 -10.08040 -9.67151 -9.26964 -9.02670 -8.78860 -8.59445 -8.23293 -7.54841 -6.59474 -4.33650 0.36055 1.11331 1.51605 1.63327 2.02735 2.58713 2.73202 2.86258 3.10712 3.36907 3.38613 3.57496 3.72247 3.79079 4.07297 4.39731 4.47474 4.57960 4.85971 5.03622 5.13430 5.14414 5.30982 5.38486 5.59595 5.63756 5.68999 5.86716 6.15597 6.27832 6.37847 6.48967 6.56922 6.73205 7.29011 7.43570 7.67133 7.68046 7.80727 8.13026 8.32524 8.51106 8.60144 9.34645 10.78150 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.002578 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.063579 B =10857.736582 C =11983.699712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.283 4.283 13 C 0.259 3.741 14 N -0.621 5.621 15 C 0.588 3.412 16 O -0.519 6.519 17 C -0.144 4.144 18 C -0.107 4.107 19 C -0.224 4.224 20 S 0.201 5.799 21 C -0.141 4.141 22 C -0.055 4.055 23 C 0.491 3.509 24 O -0.508 6.508 25 O -0.514 6.514 26 N -0.300 5.300 27 H 0.267 0.733 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.411 0.589 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.116 0.884 36 H 0.152 0.848 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.563 -20.557 -2.411 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.098 5.098 11 C -0.099 4.099 12 C -0.314 4.314 13 C 0.006 3.994 14 N -0.268 5.268 15 C 0.374 3.626 16 O -0.396 6.396 17 C -0.162 4.162 18 C -0.136 4.136 19 C -0.359 4.359 20 S 0.468 5.532 21 C -0.262 4.262 22 C -0.094 4.094 23 C 0.332 3.668 24 O -0.396 6.396 25 O -0.326 6.326 26 N -0.131 5.131 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.247 0.753 33 H 0.171 0.829 34 H 0.190 0.810 35 H 0.134 0.866 36 H 0.169 0.831 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 18.147 -19.116 -2.818 26.509 hybrid contribution -1.196 -1.246 -0.106 1.730 sum 16.952 -20.362 -2.924 26.656 Atomic orbital electron populations 1.70852 1.06783 1.30443 1.45920 1.25928 0.96309 1.02816 0.93117 0.83419 0.74811 0.74549 0.76850 1.20511 1.21220 1.21124 1.22102 0.95387 0.90425 1.56744 0.91823 1.19772 0.86305 0.82816 0.98017 1.48796 1.23303 1.19519 1.18159 1.22566 1.00460 0.90149 0.96714 1.21524 1.02173 1.06236 1.01498 1.19059 0.91435 0.94268 0.94673 1.42235 1.29733 1.24608 1.30178 1.17422 0.81968 0.79490 0.83707 1.90647 1.62553 1.60496 1.25870 1.19972 0.99789 0.97637 0.98770 1.21240 0.96224 1.01275 0.94890 1.25451 1.04241 1.00097 1.06122 1.82964 1.27829 1.24265 1.18106 1.23709 1.02011 0.98742 1.01717 1.19930 0.97937 0.94998 0.96567 1.22958 0.80688 0.79969 0.83180 1.90746 1.58309 1.69879 1.20650 1.84492 1.58033 1.45804 1.44261 1.77358 1.03504 1.16195 1.16039 0.92265 0.93588 0.94740 0.81449 0.82089 0.75279 0.82925 0.80954 0.86647 0.83083 0.72954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.65 55.43 0.76 -25.60 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.87 29.90 -169.99 -5.08 19.79 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.61 -17.12 9.24 -34.44 -0.32 -17.44 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.32 5.57 -5.19 -0.03 6.29 16 10 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.28 -5.60 9.61 -39.83 -0.38 -5.99 16 13 C 0.26 5.26 8.11 -154.43 -1.25 4.01 16 14 N -0.62 -9.99 5.43 -12.17 -0.07 -10.06 16 15 C 0.59 8.91 7.76 -12.63 -0.10 8.81 16 16 O -0.52 -8.71 11.16 5.23 0.06 -8.65 16 17 C -0.14 -1.73 5.98 -104.63 -0.63 -2.35 16 18 C -0.11 -1.01 9.91 -39.02 -0.39 -1.40 16 19 C -0.22 -1.71 11.12 28.86 0.32 -1.39 16 20 S 0.20 1.56 22.97 -107.50 -2.47 -0.90 16 21 C -0.14 -1.49 4.84 -35.11 -0.17 -1.66 16 22 C -0.06 -0.53 5.54 -29.04 -0.16 -0.69 16 23 C 0.49 5.49 8.30 36.01 0.30 5.79 16 24 O -0.51 -7.26 16.79 -18.75 -0.31 -7.58 16 25 O -0.51 -4.46 13.42 -39.24 -0.53 -4.99 16 26 N -0.30 -7.00 12.42 31.43 0.39 -6.61 16 27 H 0.27 7.61 7.22 -40.82 -0.29 7.31 16 28 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 29 H 0.03 0.91 8.00 -51.93 -0.42 0.50 16 30 H 0.17 2.72 8.06 -52.49 -0.42 2.30 16 31 H 0.16 3.03 5.91 -52.49 -0.31 2.72 16 32 H 0.41 5.48 7.37 -40.82 -0.30 5.18 16 33 H 0.15 1.15 7.10 -52.49 -0.37 0.78 16 34 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.15 1.64 5.94 -51.93 -0.31 1.33 16 37 H 0.41 1.93 9.10 45.56 0.41 2.34 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -36.42 344.23 -7.87 -44.28 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -2.47 Total: 7.43 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.10 Total: -4.66 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 0.85 Total: -49.91 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.78 Total: -21.22 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.79 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.47 Total: -0.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.42 -7.87 -44.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.854 kcal (2) G-P(sol) polarization free energy of solvation -36.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds