Wall clock time and date at job start Tue Mar 31 2020 18:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35241 * 107.86078 * 179.83477 * 11 10 9 13 13 C 1.40421 * 107.86585 * 0.42772 * 12 11 10 14 14 N 1.40109 * 125.97270 * 179.70391 * 13 12 11 15 15 C 1.34779 * 120.00233 * 0.02562 * 14 13 12 16 16 O 1.21649 * 119.99935 * 0.02562 * 15 14 13 17 17 C 1.47172 * 119.99830 * 180.02562 * 15 14 13 18 18 C 1.44425 * 123.46240 * 359.70173 * 17 15 14 19 19 C 1.32779 * 113.08165 * 179.81298 * 18 17 15 20 20 S 1.75501 * 110.57646 * 0.44172 * 19 18 17 21 21 C 1.36016 * 123.45842 * 179.97438 * 17 15 14 22 22 C 1.50697 * 124.59539 * 359.97438 * 21 17 15 23 23 C 1.50699 * 109.47710 * 89.99423 * 22 21 17 24 24 O 1.20831 * 119.99731 * 0.02562 * 23 22 21 25 25 O 1.34223 * 120.00179 * 180.02562 * 23 22 21 26 26 N 1.31226 * 108.04953 * 359.73570 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.07995 * 126.07118 * 359.97438 * 11 10 9 31 31 H 1.07997 * 126.06717 * 180.12300 * 12 11 10 32 32 H 0.97002 * 119.99510 * 180.02562 * 14 13 12 33 33 H 1.07998 * 123.46313 * 0.02562 * 18 17 15 34 34 H 1.07999 * 124.70868 * 180.15243 * 19 18 17 35 35 H 1.09008 * 109.47184 * 209.99672 * 22 21 17 36 36 H 1.09006 * 109.46988 * 329.99211 * 22 21 17 37 37 H 0.96706 * 116.99809 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2625 -5.4440 0.5302 13 6 3.8668 -4.9132 -0.6208 14 7 4.9603 -5.4618 -1.3037 15 6 5.5265 -6.6028 -0.8632 16 8 5.0878 -7.1567 0.1270 17 6 6.6755 -7.1786 -1.5803 18 6 7.2519 -6.5879 -2.7655 19 6 8.2830 -7.2760 -3.2413 20 16 8.5851 -8.6957 -2.2548 21 6 7.3002 -8.3248 -1.1980 22 6 6.9093 -9.1544 -0.0023 23 6 5.8919 -10.1858 -0.4173 24 8 5.5226 -10.2418 -1.5664 25 8 5.3961 -11.0423 0.4895 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5912 -4.7503 1.7305 31 1 3.5582 -6.3462 1.0450 32 1 5.3099 -5.0203 -2.0935 33 1 6.8844 -5.6780 -3.2164 34 1 8.8534 -7.0026 -4.1166 35 1 7.7916 -9.6546 0.3971 36 1 6.4800 -8.5083 0.7636 37 1 4.7463 -11.6862 0.1758 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:23 Heat of formation + Delta-G solvation = -35.422381 kcal Electronic energy + Delta-G solvation = -25271.161186 eV Core-core repulsion = 21334.258104 eV Total energy + Delta-G solvation = -3936.903082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37765 -41.44285 -40.73968 -38.09589 -37.09230 -36.50876 -35.60535 -33.43280 -32.73664 -31.06305 -29.29206 -28.14769 -26.10140 -24.84636 -23.27657 -22.72279 -22.28996 -21.61639 -20.24641 -19.25424 -19.18427 -18.44568 -18.40821 -17.52634 -17.48441 -16.89581 -16.75504 -16.56769 -15.92728 -15.79909 -15.55909 -15.06760 -14.67675 -14.40821 -14.30251 -14.14827 -14.00756 -13.89306 -13.69398 -13.47330 -13.24446 -12.77331 -12.61837 -12.52381 -12.08967 -12.04785 -11.95705 -11.73352 -11.66637 -11.02479 -10.91941 -10.70341 -9.98168 -9.87018 -9.49997 -9.19302 -8.78906 -6.57260 -0.43949 0.43254 0.72949 0.83959 1.10382 1.18522 1.30910 1.50807 1.57266 1.73047 1.79023 2.16120 2.28979 2.43231 2.48722 3.00197 3.34075 3.52174 3.85098 3.90947 4.10164 4.17560 4.38591 4.43084 4.53239 4.60288 4.65380 4.76016 4.79882 4.90340 4.98173 5.10741 5.17538 5.53678 5.57580 5.77763 5.90300 6.13717 6.24934 6.39824 6.86678 6.94461 6.97178 7.18661 8.57263 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.002578 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.063579 B =10857.736582 C =11983.699712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.622 4.622 8 H 0.046 0.954 9 C 0.259 3.741 10 N -0.342 5.342 11 C 0.056 3.944 12 C -0.289 4.289 13 C 0.267 3.733 14 N -0.619 5.619 15 C 0.586 3.414 16 O -0.540 6.540 17 C -0.171 4.171 18 C -0.124 4.124 19 C -0.218 4.218 20 S 0.258 5.742 21 C -0.156 4.156 22 C -0.059 4.059 23 C 0.492 3.508 24 O -0.546 6.546 25 O -0.509 6.509 26 N -0.344 5.344 27 H 0.261 0.739 28 H 0.055 0.945 29 H 0.016 0.984 30 H 0.203 0.797 31 H 0.172 0.828 32 H 0.422 0.578 33 H 0.165 0.835 34 H 0.204 0.796 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.910 -21.579 -2.535 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.660 4.660 8 H 0.064 0.936 9 C 0.140 3.860 10 N -0.124 5.124 11 C -0.092 4.092 12 C -0.319 4.319 13 C 0.013 3.987 14 N -0.267 5.267 15 C 0.374 3.626 16 O -0.418 6.418 17 C -0.190 4.190 18 C -0.152 4.152 19 C -0.353 4.353 20 S 0.526 5.474 21 C -0.277 4.277 22 C -0.097 4.097 23 C 0.335 3.665 24 O -0.436 6.436 25 O -0.323 6.323 26 N -0.175 5.175 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.220 0.780 31 H 0.189 0.811 32 H 0.260 0.740 33 H 0.182 0.818 34 H 0.221 0.779 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 20.513 -20.194 -2.938 28.935 hybrid contribution -1.814 -1.176 -0.062 2.162 sum 18.700 -21.370 -3.000 28.554 Atomic orbital electron populations 1.70947 1.07476 1.30183 1.47330 1.27295 0.96423 1.06098 0.92015 0.82881 0.74148 0.71056 0.77854 1.19979 1.19560 1.20023 1.22290 0.94715 0.92098 1.56916 0.93591 1.19434 0.86402 0.82801 0.97371 1.48584 1.23979 1.20191 1.19651 1.23197 1.00596 0.88745 0.96675 1.21746 1.02157 1.06528 1.01517 1.19416 0.91548 0.93193 0.94569 1.42386 1.28798 1.25084 1.30481 1.18017 0.82352 0.78680 0.83521 1.90612 1.63413 1.60872 1.26907 1.19895 0.99717 0.99019 1.00320 1.21357 0.97060 1.02269 0.94489 1.25885 1.03454 0.99413 1.06567 1.82790 1.25145 1.23236 1.16219 1.24056 1.02809 0.98344 1.02464 1.20041 0.99009 0.94608 0.96088 1.23251 0.80417 0.80024 0.82777 1.90728 1.59672 1.71077 1.22147 1.84463 1.58331 1.45839 1.43654 1.77273 1.04757 1.18145 1.17360 0.92975 0.92740 0.96619 0.78010 0.81059 0.73991 0.81798 0.77857 0.83013 0.84431 0.71037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 13.65 21.45 0.29 -53.99 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 49.78 29.90 68.60 2.05 51.83 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.62 -35.67 9.24 25.60 0.24 -35.43 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.26 13.49 5.57 85.64 0.48 13.97 16 10 N -0.34 -16.35 3.67 -351.84 -1.29 -17.64 16 11 C 0.06 2.23 11.43 83.52 0.96 3.19 16 12 C -0.29 -11.41 9.61 22.11 0.21 -11.20 16 13 C 0.27 11.00 8.11 133.34 1.08 12.08 16 14 N -0.62 -20.07 5.43 -310.66 -1.69 -21.76 16 15 C 0.59 17.73 7.76 86.59 0.67 18.40 16 16 O -0.54 -18.16 11.16 -4.19 -0.05 -18.21 16 17 C -0.17 -3.96 5.98 -19.87 -0.12 -4.08 16 18 C -0.12 -2.13 9.91 22.67 0.22 -1.90 16 19 C -0.22 -2.69 11.12 66.64 0.74 -1.95 16 20 S 0.26 3.26 22.97 -56.49 -1.30 1.97 16 21 C -0.16 -3.04 4.84 25.17 0.12 -2.92 16 22 C -0.06 -1.05 5.54 29.10 0.16 -0.89 16 23 C 0.49 10.49 8.30 71.24 0.59 11.08 16 24 O -0.55 -15.25 16.79 21.95 0.37 -14.88 16 25 O -0.51 -8.15 13.42 -51.35 -0.69 -8.84 16 26 N -0.34 -16.45 12.42 -54.47 -0.68 -17.13 16 27 H 0.26 15.16 7.22 -92.71 -0.67 14.49 16 28 H 0.05 2.71 7.94 -2.39 -0.02 2.69 16 29 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 30 H 0.20 6.29 8.06 -2.91 -0.02 6.27 16 31 H 0.17 6.40 5.91 -2.91 -0.02 6.38 16 32 H 0.42 11.36 7.37 -92.71 -0.68 10.68 16 33 H 0.16 2.27 7.10 -2.91 -0.02 2.25 16 34 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.15 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.14 2.90 5.94 -2.38 -0.01 2.89 16 37 H 0.43 3.47 9.10 -74.05 -0.67 2.79 16 Total: -1.00 -79.78 344.23 2.76 -77.02 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -0.09 Total: 21.85 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.82 Total: -0.23 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.36 Total: -110.51 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.37 Total: -41.93 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.30 Total: 1.97 kcal Total: -79.78 2.76 -77.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.602 kcal (2) G-P(sol) polarization free energy of solvation -79.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds