Wall clock time and date at job start Tue Mar 31 2020 18:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00161 * 2 1 4 4 H 1.48494 * 109.47333 * 270.00392 * 3 2 1 5 5 H 1.48503 * 109.46802 * 30.00394 * 3 2 1 6 6 H 1.48503 * 109.47054 * 149.99944 * 3 2 1 7 7 C 1.38943 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00555 * 157.80555 * 7 2 1 9 9 N 1.37106 * 120.00364 * 337.80477 * 7 2 1 10 10 C 1.46499 * 120.00027 * 326.01891 * 9 7 2 11 11 C 1.53003 * 109.46954 * 264.54097 * 10 9 7 12 12 C 1.50700 * 109.46785 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00458 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99827 * 180.02562 * 12 11 10 15 15 C 1.34772 * 119.99984 * 146.01256 * 9 7 2 16 16 O 1.21294 * 119.99695 * 180.02562 * 15 9 7 17 17 C 1.50698 * 120.00333 * 0.02562 * 15 9 7 18 18 C 1.50700 * 109.47495 * 180.02562 * 17 15 9 19 19 C 1.35509 * 120.04374 * 264.97819 * 18 17 15 20 20 C 1.39501 * 121.57901 * 179.74651 * 19 18 17 21 21 C 1.35509 * 121.58035 * 0.56596 * 20 19 18 22 22 C 1.41763 * 119.89948 * 359.44095 * 21 20 19 23 23 N 1.32332 * 131.00340 * 180.27414 * 22 21 20 24 24 S 1.55547 * 109.41988 * 180.02562 * 23 22 21 25 25 N 1.55547 * 100.20213 * 0.02562 * 24 23 22 26 26 C 1.32324 * 109.42023 * 359.97438 * 25 24 23 27 27 H 0.97004 * 120.00149 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46632 * 24.53706 * 10 9 7 29 29 H 1.08996 * 109.47312 * 144.53491 * 10 9 7 30 30 H 1.09006 * 109.46407 * 299.99164 * 11 10 9 31 31 H 1.08996 * 109.47606 * 59.99574 * 11 10 9 32 32 H 0.96699 * 117.00355 * 179.97438 * 14 12 11 33 33 H 1.09002 * 109.47356 * 59.99604 * 17 15 9 34 34 H 1.09007 * 109.47217 * 299.99692 * 17 15 9 35 35 H 1.07997 * 119.21278 * 0.02562 * 19 18 17 36 36 H 1.07994 * 119.20885 * 180.30877 * 20 19 18 37 37 H 1.08003 * 120.05116 * 179.71878 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0288 -1.2380 -0.3538 9 7 1.3995 -2.3469 0.4475 10 6 0.4286 -2.2789 1.5424 11 6 1.1316 -2.5827 2.8670 12 6 0.1327 -2.5133 3.9932 13 8 -1.0228 -2.2476 3.7605 14 8 0.5269 -2.7457 5.2551 15 6 1.6936 -3.5336 -0.1195 16 8 1.1542 -4.5453 0.2766 17 6 2.6926 -3.6038 -1.2456 18 6 2.8394 -5.0336 -1.6987 19 6 3.8355 -5.8047 -1.1992 20 6 3.9978 -7.1333 -1.5921 21 6 3.1738 -7.7107 -2.4998 22 6 2.1095 -6.9632 -3.0640 23 7 1.1854 -7.3004 -3.9491 24 16 0.2560 -6.0821 -4.2161 25 7 0.9029 -5.0297 -3.2709 26 6 1.9365 -5.5734 -2.6489 27 1 -0.4850 0.8401 0.0004 28 1 -0.0049 -1.2794 1.5820 29 1 -0.3611 -3.0109 1.3739 30 1 1.5650 -3.5821 2.8273 31 1 1.9213 -1.8506 3.0356 32 1 -0.1496 -2.6894 5.9438 33 1 3.6568 -3.2310 -0.8997 34 1 2.3446 -2.9930 -2.0787 35 1 4.5174 -5.3818 -0.4762 36 1 4.8020 -7.7145 -1.1657 37 1 3.3248 -8.7401 -2.7896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:48 Heat of formation + Delta-G solvation = -46.158292 kcal Electronic energy + Delta-G solvation = -26131.658547 eV Core-core repulsion = 22194.289921 eV Total energy + Delta-G solvation = -3937.368626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72335 -39.82731 -38.57632 -36.33430 -35.78829 -34.96626 -33.84610 -32.01081 -31.54347 -30.46730 -27.62004 -26.68717 -25.21736 -23.68859 -22.34461 -21.09630 -20.31124 -19.24552 -18.88904 -17.78284 -17.29786 -16.83416 -16.20236 -15.95328 -15.86617 -15.52678 -15.35594 -14.91921 -14.55086 -14.19612 -13.87302 -13.12881 -12.90850 -12.64375 -12.51903 -12.37089 -12.09119 -11.80282 -11.59186 -11.46770 -11.34593 -11.20794 -11.17972 -11.12904 -10.82914 -10.73867 -10.57344 -10.46543 -10.32404 -10.13605 -10.04344 -9.19906 -8.60314 -8.48739 -7.98468 -7.64945 -6.43924 -4.13010 0.11620 1.65155 1.68607 1.99594 2.05698 2.66773 3.06913 3.18143 3.20393 3.41131 3.72712 3.85344 4.07956 4.33454 4.82506 4.92058 5.00915 5.10514 5.29192 5.34176 5.47011 5.59889 5.79730 5.89077 5.96960 6.05869 6.21496 6.26686 6.34617 6.38188 6.48914 6.55782 6.77631 6.81756 6.87951 7.13922 7.28612 7.42159 7.80801 8.26487 8.31274 9.00159 9.41655 9.84875 10.57563 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.003934 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.697844 B = 7115.056398 C = 8127.904651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.045 3.955 3 Si 0.911 3.089 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.437 5.437 10 C 0.128 3.872 11 C -0.125 4.125 12 C 0.482 3.518 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.480 3.520 16 O -0.598 6.598 17 C -0.085 4.085 18 C 0.017 3.983 19 C -0.109 4.109 20 C -0.077 4.077 21 C -0.089 4.089 22 C 0.084 3.916 23 N -0.606 5.606 24 S 0.765 5.235 25 N -0.567 5.567 26 C 0.096 3.904 27 H 0.272 0.728 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.401 0.599 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -8.050 -1.817 10.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.163 4.163 3 Si 0.737 3.263 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.477 4.477 8 H 0.111 0.889 9 N -0.156 5.156 10 C 0.004 3.996 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.269 3.731 16 O -0.484 6.484 17 C -0.124 4.124 18 C 0.010 3.990 19 C -0.133 4.133 20 C -0.102 4.102 21 C -0.114 4.114 22 C -0.076 4.076 23 N -0.457 5.457 24 S 0.812 5.188 25 N -0.417 5.417 26 C -0.063 4.063 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.122 0.878 32 H 0.258 0.742 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.432 -8.129 -3.438 9.876 hybrid contribution 1.227 0.872 1.621 2.212 sum 5.660 -7.257 -1.817 9.381 Atomic orbital electron populations 1.69946 1.06295 1.28066 1.44188 1.25366 0.95029 0.99992 0.95880 0.86195 0.79786 0.81601 0.78692 1.20149 1.20704 1.19180 1.19420 0.97261 0.85275 1.45726 0.88855 1.43381 1.38293 1.05657 1.28238 1.21170 0.90710 1.05657 0.82050 1.21873 0.97743 1.05031 0.91756 1.23800 0.89138 0.71709 0.82875 1.90706 1.20814 1.44303 1.84324 1.84590 1.46788 1.83803 1.18466 1.20120 0.85096 0.84107 0.83770 1.90554 1.56258 1.35439 1.66116 1.20446 1.00678 0.91693 0.99625 1.18812 0.91563 0.96331 0.92330 1.20559 0.98832 0.93755 1.00199 1.20680 0.98634 0.94967 0.95921 1.20092 0.93242 0.99404 0.98641 1.21320 0.96860 0.93476 0.95962 1.72194 1.13936 1.35677 1.23883 1.78451 1.27018 0.84736 1.28566 1.72282 1.15305 1.37154 1.16999 1.21149 0.94235 0.91451 0.99513 0.91786 0.86450 0.91998 0.88365 0.87813 0.74162 0.88656 0.87844 0.84740 0.84802 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.28 11.34 55.50 0.63 -21.65 16 2 C 0.04 1.08 4.92 -17.47 -0.09 1.00 16 3 Si 0.91 18.62 29.61 -169.99 -5.03 13.59 16 4 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.35 -8.34 8.70 -14.93 -0.13 -8.47 16 8 H 0.09 2.06 6.97 -52.49 -0.37 1.69 16 9 N -0.44 -10.55 2.56 -114.81 -0.29 -10.84 16 10 C 0.13 3.06 4.19 -4.04 -0.02 3.05 16 11 C -0.13 -2.44 6.10 -27.88 -0.17 -2.61 16 12 C 0.48 8.91 8.33 36.01 0.30 9.21 16 13 O -0.51 -11.10 16.74 -18.75 -0.31 -11.42 16 14 O -0.52 -7.50 13.42 -39.26 -0.53 -8.03 16 15 C 0.48 11.23 7.59 -10.99 -0.08 11.14 16 16 O -0.60 -15.37 15.71 5.55 0.09 -15.29 16 17 C -0.08 -1.63 4.46 -29.04 -0.13 -1.76 16 18 C 0.02 0.30 4.40 -104.25 -0.46 -0.16 16 19 C -0.11 -1.55 9.51 -40.09 -0.38 -1.93 16 20 C -0.08 -0.93 9.89 -40.09 -0.40 -1.32 16 21 C -0.09 -1.20 10.09 -39.21 -0.40 -1.60 16 22 C 0.08 1.39 7.16 -83.17 -0.60 0.80 16 23 N -0.61 -9.72 11.44 25.63 0.29 -9.43 16 24 S 0.76 11.12 23.60 -107.50 -2.54 8.58 16 25 N -0.57 -10.75 11.39 25.62 0.29 -10.46 16 26 C 0.10 1.80 6.90 -83.17 -0.57 1.22 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.12 3.05 5.31 -51.92 -0.28 2.77 16 29 H 0.06 1.62 7.55 -51.93 -0.39 1.22 16 30 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 31 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 32 H 0.40 3.80 9.10 45.56 0.41 4.21 16 33 H 0.10 1.57 7.53 -51.93 -0.39 1.18 16 34 H 0.10 2.12 8.08 -51.93 -0.42 1.70 16 35 H 0.13 1.58 8.03 -52.49 -0.42 1.16 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -33.74 342.65 -8.03 -41.77 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -2.68 Total: 9.45 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -3.12 Total: 8.56 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.92 Total: -52.38 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.75 Total: -34.73 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 16 Polarization: 11.12 SS G_CDS: -2.54 Total: 8.58 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.74 -8.03 -41.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.385 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds