Wall clock time and date at job start Tue Mar 31 2020 18:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00161 * 2 1 4 4 H 1.48494 * 109.47333 * 270.00392 * 3 2 1 5 5 H 1.48503 * 109.46802 * 30.00394 * 3 2 1 6 6 H 1.48503 * 109.47054 * 149.99944 * 3 2 1 7 7 C 1.38943 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00555 * 157.80555 * 7 2 1 9 9 N 1.37106 * 120.00364 * 337.80477 * 7 2 1 10 10 C 1.46499 * 120.00027 * 326.01891 * 9 7 2 11 11 C 1.53003 * 109.46954 * 264.54097 * 10 9 7 12 12 C 1.50700 * 109.46785 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00458 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99827 * 180.02562 * 12 11 10 15 15 C 1.34772 * 119.99984 * 146.01256 * 9 7 2 16 16 O 1.21294 * 119.99695 * 180.02562 * 15 9 7 17 17 C 1.50698 * 120.00333 * 0.02562 * 15 9 7 18 18 C 1.50700 * 109.47495 * 180.02562 * 17 15 9 19 19 C 1.35509 * 120.04374 * 264.97819 * 18 17 15 20 20 C 1.39501 * 121.57901 * 179.74651 * 19 18 17 21 21 C 1.35509 * 121.58035 * 0.56596 * 20 19 18 22 22 C 1.41763 * 119.89948 * 359.44095 * 21 20 19 23 23 N 1.32332 * 131.00340 * 180.27414 * 22 21 20 24 24 S 1.55547 * 109.41988 * 180.02562 * 23 22 21 25 25 N 1.55547 * 100.20213 * 0.02562 * 24 23 22 26 26 C 1.32324 * 109.42023 * 359.97438 * 25 24 23 27 27 H 0.97004 * 120.00149 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46632 * 24.53706 * 10 9 7 29 29 H 1.08996 * 109.47312 * 144.53491 * 10 9 7 30 30 H 1.09006 * 109.46407 * 299.99164 * 11 10 9 31 31 H 1.08996 * 109.47606 * 59.99574 * 11 10 9 32 32 H 0.96699 * 117.00355 * 179.97438 * 14 12 11 33 33 H 1.09002 * 109.47356 * 59.99604 * 17 15 9 34 34 H 1.09007 * 109.47217 * 299.99692 * 17 15 9 35 35 H 1.07997 * 119.21278 * 0.02562 * 19 18 17 36 36 H 1.07994 * 119.20885 * 180.30877 * 20 19 18 37 37 H 1.08003 * 120.05116 * 179.71878 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0288 -1.2380 -0.3538 9 7 1.3995 -2.3469 0.4475 10 6 0.4286 -2.2789 1.5424 11 6 1.1316 -2.5827 2.8670 12 6 0.1327 -2.5133 3.9932 13 8 -1.0228 -2.2476 3.7605 14 8 0.5269 -2.7457 5.2551 15 6 1.6936 -3.5336 -0.1195 16 8 1.1542 -4.5453 0.2766 17 6 2.6926 -3.6038 -1.2456 18 6 2.8394 -5.0336 -1.6987 19 6 3.8355 -5.8047 -1.1992 20 6 3.9978 -7.1333 -1.5921 21 6 3.1738 -7.7107 -2.4998 22 6 2.1095 -6.9632 -3.0640 23 7 1.1854 -7.3004 -3.9491 24 16 0.2560 -6.0821 -4.2161 25 7 0.9029 -5.0297 -3.2709 26 6 1.9365 -5.5734 -2.6489 27 1 -0.4850 0.8401 0.0004 28 1 -0.0049 -1.2794 1.5820 29 1 -0.3611 -3.0109 1.3739 30 1 1.5650 -3.5821 2.8273 31 1 1.9213 -1.8506 3.0356 32 1 -0.1496 -2.6894 5.9438 33 1 3.6568 -3.2310 -0.8997 34 1 2.3446 -2.9930 -2.0787 35 1 4.5174 -5.3818 -0.4762 36 1 4.8020 -7.7145 -1.1657 37 1 3.3248 -8.7401 -2.7896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:47 Heat of formation + Delta-G solvation = -69.846306 kcal Electronic energy + Delta-G solvation = -26132.685736 eV Core-core repulsion = 22194.289921 eV Total energy + Delta-G solvation = -3938.395815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93414 -41.32962 -40.31296 -37.57023 -37.16903 -36.71579 -35.11784 -33.80824 -33.03712 -32.01741 -28.84090 -28.01436 -27.06282 -25.34397 -23.50015 -22.44977 -21.72579 -20.94930 -20.20854 -19.25770 -18.55012 -18.39252 -17.86165 -17.53784 -17.16009 -16.98761 -16.71323 -16.22539 -16.08694 -15.81516 -15.51125 -14.55949 -14.49605 -14.16237 -14.08009 -13.71889 -13.43957 -13.12028 -13.04519 -12.81410 -12.71365 -12.66646 -12.60128 -12.57189 -12.42367 -12.34391 -12.10109 -11.90993 -11.85287 -11.67416 -11.47442 -11.03202 -10.41917 -9.62262 -9.55296 -9.17905 -8.28865 -6.03663 -1.05817 0.48409 0.51981 0.81318 0.88132 1.17933 1.44627 1.51781 1.63167 1.96052 2.08259 2.38272 2.60078 3.06662 3.12647 3.23259 3.89326 3.99024 4.05833 4.06822 4.12613 4.28361 4.39947 4.42950 4.56208 4.62309 4.75527 4.82043 4.95655 5.09493 5.13812 5.36423 5.37820 5.45830 5.51905 5.58552 5.60348 5.96780 6.02309 6.40625 6.99130 7.13838 7.58690 8.01557 8.73899 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.003934 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.697844 B = 7115.056398 C = 8127.904651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.002 4.002 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.248 1.248 7 C -0.355 4.355 8 H 0.114 0.886 9 N -0.449 5.449 10 C 0.134 3.866 11 C -0.115 4.115 12 C 0.494 3.506 13 O -0.552 6.552 14 O -0.505 6.505 15 C 0.471 3.529 16 O -0.627 6.627 17 C -0.070 4.070 18 C -0.033 4.033 19 C -0.085 4.085 20 C -0.069 4.069 21 C -0.089 4.089 22 C 0.063 3.937 23 N -0.615 5.615 24 S 0.818 5.182 25 N -0.627 5.627 26 C 0.073 3.927 27 H 0.269 0.731 28 H 0.095 0.905 29 H 0.023 0.977 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.426 0.574 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.163 0.837 36 H 0.185 0.815 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 -9.104 -0.938 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.205 4.205 3 Si 0.805 3.195 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.171 1.171 7 C -0.482 4.482 8 H 0.131 0.869 9 N -0.168 5.168 10 C 0.009 3.991 11 C -0.153 4.153 12 C 0.337 3.663 13 O -0.443 6.443 14 O -0.319 6.319 15 C 0.261 3.739 16 O -0.515 6.515 17 C -0.109 4.109 18 C -0.040 4.040 19 C -0.109 4.109 20 C -0.093 4.093 21 C -0.113 4.113 22 C -0.096 4.096 23 N -0.467 5.467 24 S 0.866 5.134 25 N -0.479 5.479 26 C -0.086 4.086 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.042 0.958 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.288 0.712 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.180 0.820 36 H 0.202 0.798 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.645 -9.194 -2.528 12.221 hybrid contribution 0.201 1.060 1.355 1.733 sum 7.846 -8.134 -1.172 11.362 Atomic orbital electron populations 1.70094 1.08221 1.28662 1.46245 1.26283 0.95521 1.03349 0.95359 0.85114 0.78919 0.76870 0.78594 1.20012 1.21520 1.17106 1.19888 0.97968 0.85157 1.45153 0.86889 1.43638 1.38177 1.06271 1.28673 1.20900 0.90598 1.03006 0.84596 1.21614 0.97797 1.05750 0.90176 1.23436 0.88005 0.70891 0.83933 1.90707 1.22230 1.46250 1.85151 1.84500 1.47381 1.82668 1.17349 1.20880 0.85455 0.83340 0.84191 1.90510 1.57471 1.36359 1.67139 1.20275 1.00361 0.93339 0.96941 1.18886 0.94108 0.96166 0.94851 1.21056 0.97045 0.94333 0.98512 1.21186 0.99187 0.94146 0.94827 1.20616 0.91989 1.00513 0.98153 1.21742 0.98051 0.93228 0.96574 1.72145 1.14241 1.36280 1.24026 1.78015 1.25477 0.83226 1.26668 1.72111 1.16874 1.39737 1.19161 1.21512 0.94425 0.92567 1.00058 0.92097 0.88727 0.95831 0.87796 0.86034 0.71206 0.85868 0.90084 0.81968 0.79821 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.81 11.34 21.66 0.25 -48.57 16 2 C 0.00 -0.11 4.92 84.92 0.42 0.30 16 3 Si 0.98 38.05 29.61 68.60 2.03 40.09 16 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.29 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 7 C -0.35 -16.98 8.70 84.04 0.73 -16.25 16 8 H 0.11 4.85 6.97 -2.91 -0.02 4.82 16 9 N -0.45 -22.20 2.56 -635.54 -1.63 -23.82 16 10 C 0.13 6.65 4.19 86.38 0.36 7.01 16 11 C -0.11 -4.48 6.10 29.85 0.18 -4.29 16 12 C 0.49 18.02 8.33 71.24 0.59 18.62 16 13 O -0.55 -24.37 16.74 21.96 0.37 -24.01 16 14 O -0.51 -13.28 13.42 -51.41 -0.69 -13.97 16 15 C 0.47 22.50 7.59 87.66 0.67 23.17 16 16 O -0.63 -33.20 15.71 -3.07 -0.05 -33.25 16 17 C -0.07 -2.70 4.46 29.10 0.13 -2.57 16 18 C -0.03 -1.16 4.40 -19.62 -0.09 -1.25 16 19 C -0.09 -2.17 9.51 21.94 0.21 -1.96 16 20 C -0.07 -1.37 9.89 21.94 0.22 -1.15 16 21 C -0.09 -2.11 10.09 22.51 0.23 -1.88 16 22 C 0.06 2.04 7.16 41.97 0.30 2.34 16 23 N -0.62 -19.42 11.44 -72.82 -0.83 -20.26 16 24 S 0.82 24.28 23.60 -56.49 -1.33 22.95 16 25 N -0.63 -24.74 11.39 -72.85 -0.83 -25.57 16 26 C 0.07 2.75 6.90 41.97 0.29 3.04 16 27 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.09 5.17 5.31 -2.38 -0.01 5.16 16 29 H 0.02 1.30 7.55 -2.39 -0.02 1.29 16 30 H 0.10 3.94 8.14 -2.38 -0.02 3.92 16 31 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 32 H 0.43 6.93 9.10 -74.06 -0.67 6.25 16 33 H 0.12 3.89 7.53 -2.39 -0.02 3.87 16 34 H 0.08 3.46 8.08 -2.38 -0.02 3.44 16 35 H 0.16 3.13 8.03 -2.91 -0.02 3.11 16 36 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -77.94 342.65 2.00 -75.94 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.48 Total: 25.38 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 4.24 Total: 25.10 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -3.04 Total: -118.22 kcal Atomic # 8 Polarization: -70.86 SS G_CDS: -0.37 Total: -71.23 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 24.28 SS G_CDS: -1.33 Total: 22.95 kcal Total: -77.94 2.00 -75.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.090 kcal (2) G-P(sol) polarization free energy of solvation -77.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds