Wall clock time and date at job start Tue Mar 31 2020 18:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31309 * 1 3 3 Si 1.86804 * 119.99449 * 2 1 4 4 H 1.48499 * 109.47101 * 269.99613 * 3 2 1 5 5 H 1.48495 * 109.47469 * 30.00110 * 3 2 1 6 6 H 1.48506 * 109.46897 * 149.99622 * 3 2 1 7 7 C 1.39129 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99825 * 174.99894 * 7 2 1 9 9 N 1.36751 * 119.99599 * 354.99985 * 7 2 1 10 10 C 1.46501 * 120.00622 * 338.45187 * 9 7 2 11 11 C 1.50693 * 109.47096 * 97.40781 * 10 9 7 12 12 O 1.20830 * 120.00272 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.34782 * 119.99862 * 158.45798 * 9 7 2 15 15 O 1.21536 * 119.99717 * 357.43639 * 14 9 7 16 16 C 1.48302 * 120.00277 * 177.71023 * 14 9 7 17 17 N 1.30842 * 126.31533 * 7.39221 * 16 14 9 18 18 O 1.21270 * 110.33437 * 179.97438 * 17 16 14 19 19 C 1.34241 * 109.92160 * 359.97438 * 18 17 16 20 20 C 1.47775 * 126.56637 * 179.97438 * 19 18 17 21 21 C 1.39607 * 120.11737 * 179.74963 * 20 19 18 22 22 C 1.37876 * 119.87686 * 179.77000 * 21 20 19 23 23 C 1.38618 * 120.12168 * 0.51411 * 22 21 20 24 24 F 1.35096 * 119.88676 * 179.76759 * 23 22 21 25 25 C 1.38626 * 120.23382 * 359.73506 * 23 22 21 26 26 C 1.37874 * 120.12068 * 0.02562 * 25 23 22 27 27 N 1.31953 * 106.87156 * 359.77384 * 19 18 17 28 28 H 0.96999 * 120.00811 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47268 * 217.40933 * 10 9 7 30 30 H 1.09002 * 109.46351 * 337.40922 * 10 9 7 31 31 H 0.96699 * 116.99663 * 180.02562 * 13 11 10 32 32 H 1.08005 * 120.06144 * 0.02562 * 21 20 19 33 33 H 1.08004 * 119.93857 * 180.22993 * 22 21 20 34 34 H 1.07998 * 119.94172 * 179.97438 * 25 23 22 35 35 H 1.07990 * 120.06555 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2469 1.6179 0.0000 4 1 2.4945 2.0465 -1.4001 5 1 1.4444 2.6527 0.7000 6 1 3.5445 1.4404 0.7002 7 6 2.0088 -1.2049 0.0005 8 1 3.0857 -1.2066 -0.0810 9 7 1.3289 -2.3868 0.1043 10 6 -0.0201 -2.4084 0.6752 11 6 -1.0366 -2.3955 -0.4372 12 8 -0.6717 -2.3704 -1.5888 13 8 -2.3474 -2.4109 -0.1487 14 6 1.9000 -3.5321 -0.3186 15 8 3.0001 -3.5081 -0.8347 16 6 1.1835 -4.8208 -0.1597 17 7 -0.0511 -4.9762 0.2449 18 8 -0.3421 -6.1533 0.2675 19 6 0.7057 -6.8913 -0.1319 20 6 0.7544 -8.3641 -0.2418 21 6 1.9198 -8.9958 -0.6797 22 6 1.9613 -10.3706 -0.7759 23 6 0.8451 -11.1248 -0.4489 24 9 0.8895 -12.4713 -0.5494 25 6 -0.3163 -10.5023 -0.0185 26 6 -0.3671 -9.1284 0.0859 27 7 1.6826 -6.0495 -0.4118 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1472 -3.3109 1.2731 30 1 -0.1613 -1.5312 1.3067 31 1 -2.9614 -2.4022 -0.8958 32 1 2.7887 -8.4089 -0.9387 33 1 2.8636 -10.8605 -1.1109 34 1 -1.1833 -11.0944 0.2346 35 1 -1.2722 -8.6444 0.4217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:54 Heat of formation + Delta-G solvation = -42.115535 kcal Electronic energy + Delta-G solvation = -28201.507980 eV Core-core repulsion = 23698.101485 eV Total energy + Delta-G solvation = -4503.406495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.080 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.29520 -45.27441 -39.51387 -39.32681 -38.21756 -35.64050 -35.14904 -34.60092 -33.24537 -31.90944 -31.60873 -30.01791 -27.84549 -26.18441 -24.43446 -24.21372 -23.08865 -22.13993 -21.17136 -20.04118 -18.22537 -18.00648 -17.68055 -17.22381 -16.97987 -16.74044 -16.58523 -15.96689 -15.84169 -15.61707 -14.93838 -14.61439 -14.51287 -14.15622 -13.98434 -13.65106 -13.56611 -13.04858 -13.01797 -12.98385 -12.44753 -12.07941 -11.84659 -11.50911 -11.43122 -11.36274 -11.07996 -10.82378 -10.63711 -10.53044 -10.44298 -10.16492 -9.77549 -9.56624 -9.21267 -9.06027 -8.76919 -8.16375 -6.65990 -4.18799 0.17289 0.82998 1.42469 2.14458 2.70121 3.07585 3.11907 3.17115 3.25348 3.41725 3.49221 3.78450 3.81327 4.00690 4.17572 4.21406 4.41376 4.44806 4.69495 4.81203 4.90056 4.94902 5.15974 5.45007 5.52978 5.65756 5.69237 5.88161 5.91359 6.00990 6.18877 6.37793 6.45642 6.60342 7.27186 7.48085 7.68129 8.07209 8.31462 8.77659 8.92215 9.06443 9.51682 10.37963 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.002905 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.543715 B = 9636.595638 C =10478.539973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.033 3.967 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.294 4.294 8 H 0.114 0.886 9 N -0.396 5.396 10 C 0.132 3.868 11 C 0.508 3.492 12 O -0.519 6.519 13 O -0.527 6.527 14 C 0.522 3.478 15 O -0.545 6.545 16 C 0.173 3.827 17 N -0.364 5.364 18 O 0.084 5.916 19 C 0.202 3.798 20 C -0.028 4.028 21 C -0.035 4.035 22 C -0.155 4.155 23 C 0.120 3.880 24 F -0.135 7.135 25 C -0.156 4.156 26 C -0.052 4.052 27 N -0.430 5.430 28 H 0.278 0.722 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.391 0.609 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -16.599 3.598 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.171 4.171 3 Si 0.772 3.228 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.422 4.422 8 H 0.132 0.868 9 N -0.115 5.115 10 C 0.006 3.994 11 C 0.349 3.651 12 O -0.406 6.406 13 O -0.338 6.338 14 C 0.308 3.692 15 O -0.425 6.425 16 C -0.100 4.100 17 N -0.074 5.074 18 O 0.023 5.977 19 C -0.016 4.016 20 C -0.031 4.031 21 C -0.055 4.055 22 C -0.174 4.174 23 C 0.100 3.900 24 F -0.114 7.114 25 C -0.175 4.175 26 C -0.071 4.071 27 N -0.163 5.163 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.163 0.837 31 H 0.247 0.753 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.116 -15.605 3.423 16.497 hybrid contribution -0.455 0.466 -0.693 0.952 sum -4.571 -15.138 2.730 16.047 Atomic orbital electron populations 1.69644 1.06352 1.28759 1.46999 1.25508 0.95742 1.00524 0.95316 0.85597 0.79109 0.79236 0.78876 1.19912 1.20471 1.18918 1.19901 0.93323 0.80822 1.48135 0.86792 1.43180 1.12324 1.05950 1.50051 1.21118 0.80223 1.05047 0.93013 1.23405 0.81232 0.69641 0.90805 1.90608 1.80552 1.46450 1.22980 1.84507 1.18804 1.86897 1.43543 1.16229 0.87315 0.80353 0.85316 1.90670 1.20481 1.84581 1.46728 1.26183 0.88396 0.96245 0.99162 1.75135 1.16811 0.94838 1.20635 1.85345 1.37808 1.12467 1.62109 1.26251 0.82940 0.95389 0.96999 1.17241 0.96204 0.83866 1.05776 1.21186 0.97270 0.93531 0.93481 1.21114 0.98673 0.93721 1.03900 1.17968 0.95254 0.77096 0.99691 1.91527 1.96960 1.29349 1.93520 1.21046 0.97947 0.94896 1.03573 1.21151 0.97666 0.92778 0.95555 1.72211 1.26835 0.98604 1.18645 0.91107 0.89306 0.83729 0.75285 0.82974 0.83594 0.83675 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.27 8.85 55.50 0.49 -21.78 16 2 C 0.03 0.84 5.22 -17.44 -0.09 0.75 16 3 Si 0.95 19.87 29.56 -169.99 -5.02 14.85 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.29 -7.95 9.32 -15.03 -0.14 -8.09 16 8 H 0.11 3.13 7.39 -52.49 -0.39 2.74 16 9 N -0.40 -10.40 2.19 -117.02 -0.26 -10.66 16 10 C 0.13 3.07 4.79 -5.20 -0.02 3.04 16 11 C 0.51 11.93 5.35 36.00 0.19 12.13 16 12 O -0.52 -14.15 16.92 -18.75 -0.32 -14.46 16 13 O -0.53 -10.11 13.42 -39.25 -0.53 -10.63 16 14 C 0.52 13.89 7.37 -12.12 -0.09 13.80 16 15 O -0.54 -15.89 16.80 5.33 0.09 -15.80 16 16 C 0.17 3.93 7.63 -156.31 -1.19 2.74 16 17 N -0.36 -7.30 7.89 31.19 0.25 -7.05 16 18 O 0.08 1.38 11.11 16.55 0.18 1.57 16 19 C 0.20 3.19 8.00 -13.83 -0.11 3.08 16 20 C -0.03 -0.33 5.87 -104.97 -0.62 -0.94 16 21 C -0.03 -0.36 9.70 -39.20 -0.38 -0.74 16 22 C -0.16 -1.30 10.01 -39.57 -0.40 -1.70 16 23 C 0.12 1.01 7.30 -39.30 -0.29 0.73 16 24 F -0.14 -1.21 17.26 2.25 0.04 -1.17 16 25 C -0.16 -1.16 10.01 -39.57 -0.40 -1.56 16 26 C -0.05 -0.44 9.72 -39.20 -0.38 -0.82 16 27 N -0.43 -8.62 11.27 -10.26 -0.12 -8.73 16 28 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.09 1.88 5.59 -51.93 -0.29 1.59 16 30 H 0.15 3.40 6.08 -51.93 -0.32 3.08 16 31 H 0.39 5.79 9.10 45.56 0.41 6.21 16 32 H 0.15 1.63 7.87 -52.48 -0.41 1.22 16 33 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 34 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 1.00 7.94 -52.49 -0.42 0.59 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -34.17 325.29 -5.59 -39.76 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -1.39 Total: 6.81 kcal Atomic # 6 Polarization: 26.32 SS G_CDS: -3.91 Total: 22.40 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.36 Total: -48.23 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.57 Total: -39.33 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.17 -5.59 -39.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.352 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds