Wall clock time and date at job start Tue Mar 31 2020 18:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31309 * 1 3 3 Si 1.86804 * 119.99449 * 2 1 4 4 H 1.48499 * 109.47101 * 269.99613 * 3 2 1 5 5 H 1.48495 * 109.47469 * 30.00110 * 3 2 1 6 6 H 1.48506 * 109.46897 * 149.99622 * 3 2 1 7 7 C 1.39129 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99825 * 174.99894 * 7 2 1 9 9 N 1.36751 * 119.99599 * 354.99985 * 7 2 1 10 10 C 1.46501 * 120.00622 * 338.45187 * 9 7 2 11 11 C 1.50693 * 109.47096 * 97.40781 * 10 9 7 12 12 O 1.20830 * 120.00272 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99929 * 180.02562 * 11 10 9 14 14 C 1.34782 * 119.99862 * 158.45798 * 9 7 2 15 15 O 1.21536 * 119.99717 * 357.43639 * 14 9 7 16 16 C 1.48302 * 120.00277 * 177.71023 * 14 9 7 17 17 N 1.30842 * 126.31533 * 7.39221 * 16 14 9 18 18 O 1.21270 * 110.33437 * 179.97438 * 17 16 14 19 19 C 1.34241 * 109.92160 * 359.97438 * 18 17 16 20 20 C 1.47775 * 126.56637 * 179.97438 * 19 18 17 21 21 C 1.39607 * 120.11737 * 179.74963 * 20 19 18 22 22 C 1.37876 * 119.87686 * 179.77000 * 21 20 19 23 23 C 1.38618 * 120.12168 * 0.51411 * 22 21 20 24 24 F 1.35096 * 119.88676 * 179.76759 * 23 22 21 25 25 C 1.38626 * 120.23382 * 359.73506 * 23 22 21 26 26 C 1.37874 * 120.12068 * 0.02562 * 25 23 22 27 27 N 1.31953 * 106.87156 * 359.77384 * 19 18 17 28 28 H 0.96999 * 120.00811 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47268 * 217.40933 * 10 9 7 30 30 H 1.09002 * 109.46351 * 337.40922 * 10 9 7 31 31 H 0.96699 * 116.99663 * 180.02562 * 13 11 10 32 32 H 1.08005 * 120.06144 * 0.02562 * 21 20 19 33 33 H 1.08004 * 119.93857 * 180.22993 * 22 21 20 34 34 H 1.07998 * 119.94172 * 179.97438 * 25 23 22 35 35 H 1.07990 * 120.06555 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2469 1.6179 0.0000 4 1 2.4945 2.0465 -1.4001 5 1 1.4444 2.6527 0.7000 6 1 3.5445 1.4404 0.7002 7 6 2.0088 -1.2049 0.0005 8 1 3.0857 -1.2066 -0.0810 9 7 1.3289 -2.3868 0.1043 10 6 -0.0201 -2.4084 0.6752 11 6 -1.0366 -2.3955 -0.4372 12 8 -0.6717 -2.3704 -1.5888 13 8 -2.3474 -2.4109 -0.1487 14 6 1.9000 -3.5321 -0.3186 15 8 3.0001 -3.5081 -0.8347 16 6 1.1835 -4.8208 -0.1597 17 7 -0.0511 -4.9762 0.2449 18 8 -0.3421 -6.1533 0.2675 19 6 0.7057 -6.8913 -0.1319 20 6 0.7544 -8.3641 -0.2418 21 6 1.9198 -8.9958 -0.6797 22 6 1.9613 -10.3706 -0.7759 23 6 0.8451 -11.1248 -0.4489 24 9 0.8895 -12.4713 -0.5494 25 6 -0.3163 -10.5023 -0.0185 26 6 -0.3671 -9.1284 0.0859 27 7 1.6826 -6.0495 -0.4118 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1472 -3.3109 1.2731 30 1 -0.1613 -1.5312 1.3067 31 1 -2.9614 -2.4022 -0.8958 32 1 2.7887 -8.4089 -0.9387 33 1 2.8636 -10.8605 -1.1109 34 1 -1.1833 -11.0944 0.2346 35 1 -1.2722 -8.6444 0.4217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071605.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:54 Heat of formation + Delta-G solvation = -66.586397 kcal Electronic energy + Delta-G solvation = -28202.569116 eV Core-core repulsion = 23698.101485 eV Total energy + Delta-G solvation = -4504.467631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.080 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.99374 -46.79991 -41.39241 -40.13728 -40.08772 -37.38066 -36.81955 -36.50405 -34.67915 -33.70246 -32.31603 -31.11413 -29.72782 -28.03479 -25.90735 -25.52493 -24.00221 -23.37140 -22.90690 -21.60711 -19.57337 -19.45470 -19.09419 -18.80574 -18.58900 -18.43733 -17.52435 -17.45005 -17.04629 -16.80236 -16.65317 -16.34356 -15.98155 -15.52774 -15.34516 -14.92284 -14.63578 -14.49410 -14.08133 -13.95377 -13.87442 -13.68696 -13.61017 -13.19597 -12.96081 -12.79738 -12.62275 -12.34402 -12.22931 -12.11425 -12.07864 -11.73325 -11.59498 -11.14833 -11.09644 -10.23496 -10.14197 -9.69756 -8.59388 -6.23000 -0.80950 -0.03883 0.16444 0.83302 1.37782 1.39856 1.45081 1.52285 1.62393 1.77142 2.00773 2.31537 2.41879 2.49383 2.66764 2.92061 3.04392 3.12115 3.64786 3.69831 3.81769 4.06519 4.15839 4.22483 4.25818 4.63079 4.71435 4.75924 4.78993 4.89874 5.00078 5.07247 5.23320 5.24985 5.69372 5.72586 5.82478 6.11839 6.75455 6.83550 6.98813 7.29966 7.53882 8.43735 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.002905 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.543715 B = 9636.595638 C =10478.539973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.004 3.996 3 Si 1.011 2.989 4 H -0.280 1.280 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.337 4.337 8 H 0.095 0.905 9 N -0.404 5.404 10 C 0.133 3.867 11 C 0.516 3.484 12 O -0.562 6.562 13 O -0.510 6.510 14 C 0.508 3.492 15 O -0.591 6.591 16 C 0.146 3.854 17 N -0.364 5.364 18 O 0.111 5.889 19 C 0.232 3.768 20 C -0.057 4.057 21 C -0.040 4.040 22 C -0.152 4.152 23 C 0.126 3.874 24 F -0.135 7.135 25 C -0.145 4.145 26 C -0.036 4.036 27 N -0.464 5.464 28 H 0.285 0.715 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.414 0.586 32 H 0.140 0.860 33 H 0.165 0.835 34 H 0.177 0.823 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.957 -18.340 4.406 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.198 4.198 3 Si 0.833 3.167 4 H -0.206 1.206 5 H -0.183 1.183 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.112 0.888 9 N -0.122 5.122 10 C 0.008 3.992 11 C 0.360 3.640 12 O -0.452 6.452 13 O -0.322 6.322 14 C 0.295 3.705 15 O -0.475 6.475 16 C -0.126 4.126 17 N -0.071 5.071 18 O 0.044 5.956 19 C 0.015 3.985 20 C -0.059 4.059 21 C -0.060 4.060 22 C -0.170 4.170 23 C 0.105 3.895 24 F -0.113 7.113 25 C -0.163 4.163 26 C -0.056 4.056 27 N -0.197 5.197 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.160 0.840 31 H 0.273 0.727 32 H 0.158 0.842 33 H 0.183 0.817 34 H 0.195 0.805 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.261 -17.330 4.259 18.912 hybrid contribution 0.034 0.709 -0.939 1.177 sum -6.227 -16.620 3.320 18.057 Atomic orbital electron populations 1.69698 1.07145 1.29883 1.45923 1.26348 0.96674 1.02988 0.93839 0.84670 0.78325 0.75238 0.78495 1.20602 1.18300 1.18446 1.19955 0.93068 0.82193 1.51216 0.88757 1.43337 1.13259 1.05811 1.49749 1.21178 0.79175 1.05761 0.93055 1.23301 0.82335 0.68514 0.89893 1.90596 1.81522 1.48585 1.24526 1.84429 1.17332 1.85950 1.44488 1.16680 0.87208 0.81735 0.84905 1.90598 1.22359 1.85770 1.48765 1.25505 0.89345 0.95723 1.02027 1.75025 1.15595 0.96489 1.20029 1.85296 1.37497 1.11392 1.61431 1.26917 0.81181 0.96549 0.93832 1.17396 0.98156 0.81349 1.09046 1.21143 0.96711 0.94336 0.93764 1.21240 0.99694 0.92757 1.03357 1.18147 0.95509 0.77054 0.98749 1.91540 1.96965 1.29412 1.93385 1.21350 0.98519 0.94438 1.02036 1.21377 0.97172 0.93074 0.93988 1.72159 1.28491 0.98254 1.20791 0.90450 0.87394 0.84050 0.72654 0.84221 0.81712 0.80526 0.81228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.04 8.85 21.69 0.19 -44.85 16 2 C 0.00 0.22 5.22 84.99 0.44 0.67 16 3 Si 1.01 40.92 29.56 68.60 2.03 42.95 16 4 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.34 -19.05 9.32 84.14 0.78 -18.27 16 8 H 0.09 5.54 7.39 -2.91 -0.02 5.52 16 9 N -0.40 -22.13 2.19 -642.41 -1.41 -23.54 16 10 C 0.13 6.30 4.79 85.63 0.41 6.71 16 11 C 0.52 24.23 5.35 71.23 0.38 24.61 16 12 O -0.56 -31.09 16.92 21.95 0.37 -30.72 16 13 O -0.51 -18.70 13.42 -51.40 -0.69 -19.39 16 14 C 0.51 28.49 7.37 86.92 0.64 29.13 16 15 O -0.59 -36.90 16.80 -3.83 -0.06 -36.96 16 16 C 0.15 6.88 7.63 137.31 1.05 7.92 16 17 N -0.36 -14.60 7.89 -57.78 -0.46 -15.05 16 18 O 0.11 3.51 11.11 69.29 0.77 4.28 16 19 C 0.23 7.16 8.00 87.28 0.70 7.86 16 20 C -0.06 -1.21 5.87 -20.09 -0.12 -1.32 16 21 C -0.04 -0.77 9.70 22.51 0.22 -0.56 16 22 C -0.15 -2.20 10.01 22.27 0.22 -1.97 16 23 C 0.13 1.69 7.30 22.45 0.16 1.85 16 24 F -0.13 -1.94 17.26 44.97 0.78 -1.17 16 25 C -0.15 -1.55 10.01 22.28 0.22 -1.32 16 26 C -0.04 -0.50 9.72 22.52 0.22 -0.28 16 27 N -0.46 -19.17 11.27 -302.42 -3.41 -22.58 16 28 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 29 H 0.11 4.61 5.59 -2.39 -0.01 4.59 16 30 H 0.14 6.73 6.08 -2.39 -0.01 6.71 16 31 H 0.41 11.34 9.10 -74.06 -0.67 10.66 16 32 H 0.14 3.07 7.87 -2.91 -0.02 3.05 16 33 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.17 1.56 7.94 -2.92 -0.02 1.53 16 Total: -1.00 -78.11 325.29 3.98 -74.13 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.53 Total: 17.87 kcal Atomic # 6 Polarization: 49.70 SS G_CDS: 5.33 Total: 55.03 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -5.08 Total: -106.02 kcal Atomic # 8 Polarization: -83.18 SS G_CDS: 0.39 Total: -82.79 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.78 Total: -1.17 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -78.11 3.98 -74.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071605.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.545 kcal (2) G-P(sol) polarization free energy of solvation -78.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds