Wall clock time and date at job start Tue Mar 31 2020 19:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00367 * 2 1 4 4 H 1.48499 * 109.46724 * 274.99690 * 3 2 1 5 5 H 1.48506 * 109.46790 * 34.99006 * 3 2 1 6 6 H 1.48498 * 109.47302 * 154.99125 * 3 2 1 7 7 C 1.37877 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00120 * 185.13714 * 7 2 1 9 9 C 1.50700 * 119.99945 * 5.13472 * 7 2 1 10 10 O 1.42903 * 110.88928 * 295.57968 * 9 7 2 11 11 C 1.55158 * 111.00539 * 171.69783 * 9 7 2 12 12 C 1.54433 * 102.89602 * 206.40788 * 11 9 7 13 13 N 1.47025 * 107.27927 * 22.18539 * 12 11 9 14 14 C 1.34770 * 125.64596 * 181.09628 * 13 12 11 15 15 O 1.21666 * 119.99763 * 174.88114 * 14 13 12 16 16 C 1.46975 * 120.00139 * 354.87582 * 14 13 12 17 17 C 1.39517 * 123.13328 * 314.33556 * 16 14 13 18 18 C 1.32804 * 115.17576 * 179.97438 * 17 16 14 19 19 S 1.75722 * 110.50070 * 0.02562 * 18 17 16 20 20 C 1.37667 * 123.13210 * 134.04303 * 16 14 13 21 21 C 1.47742 * 125.37707 * 359.97438 * 20 16 14 22 22 N 1.34254 * 126.70901 * 4.42786 * 21 20 16 23 23 N 1.28981 * 107.24570 * 179.97438 * 22 21 20 24 24 N 1.28716 * 109.00832 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.30676 * 180.02562 * 24 23 22 26 26 N 1.28870 * 109.37911 * 359.76523 * 24 23 22 27 27 C 1.47424 * 108.70148 * 1.06370 * 13 12 11 28 28 H 0.97002 * 119.99882 * 359.97438 * 1 2 3 29 29 H 0.96696 * 113.99899 * 59.29751 * 10 9 7 30 30 H 1.08999 * 110.71962 * 324.75072 * 11 9 7 31 31 H 1.09002 * 110.72017 * 88.02390 * 11 9 7 32 32 H 1.08998 * 109.87349 * 262.76723 * 12 11 9 33 33 H 1.08994 * 110.00507 * 141.67886 * 12 11 9 34 34 H 1.08001 * 122.41334 * 359.94007 * 17 16 14 35 35 H 1.07996 * 124.75600 * 179.97438 * 18 17 16 36 36 H 1.09005 * 110.36574 * 217.03057 * 27 13 12 37 37 H 1.08994 * 110.36992 * 94.70923 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5956 1.4119 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1959 0.0843 9 6 1.2555 -2.4966 -0.1157 10 8 0.4108 -2.7015 1.0185 11 6 2.2341 -3.6861 -0.3024 12 6 1.3750 -4.7239 -1.0572 13 7 0.2851 -3.9910 -1.7180 14 6 -0.6945 -4.5424 -2.4614 15 8 -1.6000 -3.8491 -2.8853 16 6 -0.6690 -5.9813 -2.7602 17 6 0.4786 -6.6518 -3.1845 18 6 0.3231 -7.9514 -3.4089 19 16 -1.3357 -8.4366 -3.0913 20 6 -1.7737 -6.7941 -2.6418 21 6 -3.1160 -6.3551 -2.2077 22 7 -3.5015 -5.0972 -1.9402 23 7 -4.7437 -5.1429 -1.5961 24 7 -5.1453 -6.3652 -1.6368 25 1 -6.0416 -6.6682 -1.4229 26 7 -4.1724 -7.1227 -2.0114 27 6 0.4411 -2.5532 -1.4322 28 1 -0.4850 0.8401 0.0004 29 1 -0.2503 -2.0076 1.1471 30 1 3.0939 -3.3876 -0.9023 31 1 2.5536 -4.0779 0.6632 32 1 0.9623 -5.4460 -0.3527 33 1 1.9812 -5.2384 -1.8027 34 1 1.4251 -6.1499 -3.3211 35 1 1.1061 -8.6169 -3.7410 36 1 -0.5341 -2.0857 -1.2953 37 1 0.9877 -2.0633 -2.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606345321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:05 Heat of formation + Delta-G solvation = 96.283634 kcal Electronic energy + Delta-G solvation = -26728.633103 eV Core-core repulsion = 22829.733974 eV Total energy + Delta-G solvation = -3898.899129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.32462 -39.70196 -37.65295 -36.45572 -34.33005 -34.04475 -33.36082 -32.16814 -30.16059 -29.58695 -27.88978 -26.18140 -24.56580 -24.42285 -22.85452 -22.56534 -20.50884 -19.63331 -19.43325 -18.02503 -17.73977 -17.05620 -17.02008 -16.16393 -15.44068 -15.04297 -14.67746 -14.41525 -14.28115 -13.94292 -13.72309 -13.45952 -13.00650 -12.79725 -12.76121 -12.37698 -12.00031 -11.82468 -11.57803 -11.34433 -11.25258 -11.21182 -11.01891 -10.97286 -10.85681 -10.67202 -10.52542 -10.43987 -10.11789 -9.37138 -9.21972 -8.73170 -8.63707 -8.60145 -8.26505 -7.63922 -6.22187 -4.31973 0.23356 1.18562 1.24006 1.67290 2.04903 2.26327 2.60079 3.23982 3.32227 3.34519 3.49934 3.68669 3.85842 4.30991 4.46518 4.80291 5.03992 5.08330 5.23112 5.31569 5.48872 5.56527 5.66106 5.77893 5.86299 5.99659 6.09823 6.14417 6.28912 6.40257 6.58191 6.78633 6.93097 7.12197 7.34439 7.45736 7.80026 8.07979 8.26589 8.32666 8.71575 8.86905 9.36095 9.47676 10.84694 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.003827 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.618009 B = 7313.816839 C = 8481.662463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.118 4.118 12 C 0.105 3.895 13 N -0.603 5.603 14 C 0.571 3.429 15 O -0.504 6.504 16 C -0.079 4.079 17 C -0.113 4.113 18 C -0.208 4.208 19 S 0.185 5.815 20 C -0.090 4.090 21 C 0.236 3.764 22 N -0.203 5.203 23 N -0.051 5.051 24 N -0.233 5.233 25 H 0.473 0.527 26 N -0.299 5.299 27 C 0.098 3.902 28 H 0.270 0.730 29 H 0.382 0.618 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.156 0.844 35 H 0.176 0.824 36 H 0.088 0.912 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 -17.974 -5.548 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.132 4.132 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.156 4.156 12 C -0.019 4.019 13 N -0.336 5.336 14 C 0.355 3.645 15 O -0.379 6.379 16 C -0.100 4.100 17 C -0.142 4.142 18 C -0.345 4.345 19 S 0.450 5.550 20 C -0.212 4.212 21 C -0.045 4.045 22 N -0.076 5.076 23 N -0.047 5.047 24 N -0.078 5.078 25 H 0.327 0.673 26 N -0.153 5.153 27 C -0.023 4.023 28 H 0.080 0.920 29 H 0.233 0.767 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.173 0.827 35 H 0.193 0.807 36 H 0.107 0.893 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.981 -19.002 -5.677 20.448 hybrid contribution 0.632 2.139 -0.039 2.231 sum -4.349 -16.863 -5.716 18.328 Atomic orbital electron populations 1.69715 1.05960 1.27882 1.49159 1.25078 0.94980 0.99667 0.93436 0.86431 0.79863 0.82713 0.78140 1.20458 1.21056 1.19713 1.21467 0.93981 0.90175 1.52252 0.91549 1.19621 0.86159 0.91361 0.82068 1.86090 1.51201 1.52817 1.49186 1.22641 0.97725 0.95722 0.99476 1.22083 0.88824 0.95522 0.95453 1.48549 1.25836 1.10349 1.48896 1.17048 0.81923 0.85419 0.80085 1.90872 1.33084 1.62027 1.51940 1.19636 0.92040 0.95880 1.02404 1.20096 0.99045 0.93567 1.01520 1.25620 1.00224 0.99610 1.09046 1.84104 1.03207 1.04450 1.63191 1.21547 0.91101 0.98051 1.10514 1.22316 0.92771 0.87071 1.02326 1.76835 1.00712 1.17932 1.12167 1.79104 1.07648 1.02924 1.15047 1.47703 1.13507 1.03592 1.42985 0.67344 1.74915 0.96793 1.23479 1.20065 1.23222 1.02929 0.77127 0.99035 0.91981 0.76735 0.90376 0.90851 0.92481 0.92634 0.82689 0.80680 0.89326 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.04 10.70 55.43 0.59 -23.45 16 2 C 0.07 1.89 5.25 -17.82 -0.09 1.79 16 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.06 8.27 -34.44 -0.28 -14.34 16 8 H 0.07 1.69 7.80 -52.49 -0.41 1.28 16 9 C 0.25 6.04 0.88 -89.62 -0.08 5.96 16 10 O -0.58 -15.22 13.18 -35.23 -0.46 -15.69 16 11 C -0.12 -2.32 6.14 -24.84 -0.15 -2.47 16 12 C 0.10 1.85 6.00 -3.00 -0.02 1.83 16 13 N -0.60 -12.67 3.33 -171.88 -0.57 -13.24 16 14 C 0.57 11.97 7.01 -12.72 -0.09 11.88 16 15 O -0.50 -12.31 14.73 5.22 0.08 -12.24 16 16 C -0.08 -1.30 5.29 -106.09 -0.56 -1.86 16 17 C -0.11 -1.40 8.68 -40.97 -0.36 -1.75 16 18 C -0.21 -1.99 11.14 28.87 0.32 -1.67 16 19 S 0.19 1.98 23.29 -107.50 -2.50 -0.52 16 20 C -0.09 -1.41 6.52 -35.91 -0.23 -1.64 16 21 C 0.24 4.01 8.02 -156.24 -1.25 2.76 16 22 N -0.20 -4.00 9.56 32.06 0.31 -3.70 16 23 N -0.05 -0.83 13.46 60.35 0.81 -0.02 16 24 N -0.23 -2.72 7.89 60.35 0.48 -2.24 16 25 H 0.47 2.81 8.96 -340.32 -3.05 -0.24 16 26 N -0.30 -4.12 12.41 32.07 0.40 -3.73 16 27 C 0.10 2.38 5.41 -2.53 -0.01 2.37 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.38 10.32 7.48 45.56 0.34 10.66 16 30 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.78 6.02 -51.93 -0.31 0.47 16 34 H 0.16 1.70 6.53 -52.49 -0.34 1.36 16 35 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.09 2.46 7.31 -51.93 -0.38 2.08 16 37 H 0.06 1.48 8.03 -51.93 -0.42 1.06 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -33.60 330.82 -9.11 -42.71 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.39 Total: 8.88 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.81 Total: 2.85 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 2.01 Total: -46.37 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.39 Total: -27.92 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.50 Total: -0.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.60 -9.11 -42.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606345321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.996 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds