Wall clock time and date at job start Tue Mar 31 2020 19:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00367 * 2 1 4 4 H 1.48499 * 109.46724 * 274.99690 * 3 2 1 5 5 H 1.48506 * 109.46790 * 34.99006 * 3 2 1 6 6 H 1.48498 * 109.47302 * 154.99125 * 3 2 1 7 7 C 1.37877 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00120 * 185.13714 * 7 2 1 9 9 C 1.50700 * 119.99945 * 5.13472 * 7 2 1 10 10 O 1.42903 * 110.88928 * 295.57968 * 9 7 2 11 11 C 1.55158 * 111.00539 * 171.69783 * 9 7 2 12 12 C 1.54433 * 102.89602 * 206.40788 * 11 9 7 13 13 N 1.47025 * 107.27927 * 22.18539 * 12 11 9 14 14 C 1.34770 * 125.64596 * 181.09628 * 13 12 11 15 15 O 1.21666 * 119.99763 * 174.88114 * 14 13 12 16 16 C 1.46975 * 120.00139 * 354.87582 * 14 13 12 17 17 C 1.39517 * 123.13328 * 314.33556 * 16 14 13 18 18 C 1.32804 * 115.17576 * 179.97438 * 17 16 14 19 19 S 1.75722 * 110.50070 * 0.02562 * 18 17 16 20 20 C 1.37667 * 123.13210 * 134.04303 * 16 14 13 21 21 C 1.47742 * 125.37707 * 359.97438 * 20 16 14 22 22 N 1.34254 * 126.70901 * 4.42786 * 21 20 16 23 23 N 1.28981 * 107.24570 * 179.97438 * 22 21 20 24 24 N 1.28716 * 109.00832 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.30676 * 180.02562 * 24 23 22 26 26 N 1.28870 * 109.37911 * 359.76523 * 24 23 22 27 27 C 1.47424 * 108.70148 * 1.06370 * 13 12 11 28 28 H 0.97002 * 119.99882 * 359.97438 * 1 2 3 29 29 H 0.96696 * 113.99899 * 59.29751 * 10 9 7 30 30 H 1.08999 * 110.71962 * 324.75072 * 11 9 7 31 31 H 1.09002 * 110.72017 * 88.02390 * 11 9 7 32 32 H 1.08998 * 109.87349 * 262.76723 * 12 11 9 33 33 H 1.08994 * 110.00507 * 141.67886 * 12 11 9 34 34 H 1.08001 * 122.41334 * 359.94007 * 17 16 14 35 35 H 1.07996 * 124.75600 * 179.97438 * 18 17 16 36 36 H 1.09005 * 110.36574 * 217.03057 * 27 13 12 37 37 H 1.08994 * 110.36992 * 94.70923 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5956 1.4119 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0813 -1.1959 0.0843 9 6 1.2555 -2.4966 -0.1157 10 8 0.4108 -2.7015 1.0185 11 6 2.2341 -3.6861 -0.3024 12 6 1.3750 -4.7239 -1.0572 13 7 0.2851 -3.9910 -1.7180 14 6 -0.6945 -4.5424 -2.4614 15 8 -1.6000 -3.8491 -2.8853 16 6 -0.6690 -5.9813 -2.7602 17 6 0.4786 -6.6518 -3.1845 18 6 0.3231 -7.9514 -3.4089 19 16 -1.3357 -8.4366 -3.0913 20 6 -1.7737 -6.7941 -2.6418 21 6 -3.1160 -6.3551 -2.2077 22 7 -3.5015 -5.0972 -1.9402 23 7 -4.7437 -5.1429 -1.5961 24 7 -5.1453 -6.3652 -1.6368 25 1 -6.0416 -6.6682 -1.4229 26 7 -4.1724 -7.1227 -2.0114 27 6 0.4411 -2.5532 -1.4322 28 1 -0.4850 0.8401 0.0004 29 1 -0.2503 -2.0076 1.1471 30 1 3.0939 -3.3876 -0.9023 31 1 2.5536 -4.0779 0.6632 32 1 0.9623 -5.4460 -0.3527 33 1 1.9812 -5.2384 -1.8027 34 1 1.4251 -6.1499 -3.3211 35 1 1.1061 -8.6169 -3.7410 36 1 -0.5341 -2.0857 -1.2953 37 1 0.9877 -2.0633 -2.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606345321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:04 Heat of formation + Delta-G solvation = 69.131211 kcal Electronic energy + Delta-G solvation = -26729.810521 eV Core-core repulsion = 22829.733974 eV Total energy + Delta-G solvation = -3900.076547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.49178 -41.18996 -39.18249 -37.86747 -36.00272 -35.38906 -34.50972 -34.21080 -31.81634 -30.66225 -29.62831 -27.77245 -26.10973 -25.63651 -24.30899 -23.74666 -21.70187 -21.42971 -20.69740 -19.33939 -19.00898 -18.79531 -18.22030 -17.44799 -17.13916 -16.79201 -16.32912 -16.02078 -15.42544 -15.21052 -15.04739 -14.78688 -14.59509 -14.53824 -14.04054 -13.59400 -13.48994 -13.44269 -13.18160 -13.04808 -12.83773 -12.51780 -12.42722 -12.31570 -12.22578 -12.15610 -12.07646 -12.00311 -11.89342 -11.17584 -10.89127 -10.62224 -10.26018 -9.69266 -9.55466 -9.31504 -8.21867 -6.39537 -0.81635 0.07392 0.23715 0.81171 1.02192 1.35147 1.36883 1.43236 1.45238 1.55589 2.02541 2.34272 2.42263 2.59879 3.04388 3.27997 3.66845 3.84286 4.01824 4.12838 4.17270 4.23071 4.39180 4.41523 4.48456 4.64736 4.80703 4.91357 5.08843 5.10672 5.16025 5.18929 5.37693 5.48405 5.54186 5.56774 5.78942 6.10202 6.66868 6.76587 7.07542 7.27512 7.31084 7.38488 8.83280 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.003827 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.618009 B = 7313.816839 C = 8481.662463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.230 3.770 10 O -0.592 6.592 11 C -0.112 4.112 12 C 0.108 3.892 13 N -0.608 5.608 14 C 0.565 3.435 15 O -0.554 6.554 16 C -0.098 4.098 17 C -0.132 4.132 18 C -0.174 4.174 19 S 0.257 5.743 20 C -0.130 4.130 21 C 0.219 3.781 22 N -0.264 5.264 23 N -0.070 5.070 24 N -0.196 5.196 25 H 0.495 0.505 26 N -0.283 5.283 27 C 0.113 3.887 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.170 0.830 35 H 0.225 0.775 36 H 0.040 0.960 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 -21.428 -6.344 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.090 0.910 9 C 0.190 3.810 10 O -0.400 6.400 11 C -0.149 4.149 12 C -0.014 4.014 13 N -0.342 5.342 14 C 0.352 3.648 15 O -0.432 6.432 16 C -0.120 4.120 17 C -0.160 4.160 18 C -0.311 4.311 19 S 0.523 5.477 20 C -0.252 4.252 21 C -0.061 4.061 22 N -0.137 5.137 23 N -0.066 5.066 24 N -0.047 5.047 25 H 0.355 0.645 26 N -0.138 5.138 27 C -0.010 4.010 28 H 0.077 0.923 29 H 0.221 0.779 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.187 0.813 35 H 0.241 0.759 36 H 0.059 0.941 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.008 -22.495 -6.459 23.596 hybrid contribution -0.092 3.051 0.194 3.059 sum -3.100 -19.444 -6.265 20.662 Atomic orbital electron populations 1.69860 1.07366 1.28311 1.49962 1.25859 0.95624 1.02924 0.93123 0.85455 0.78915 0.78725 0.78013 1.20257 1.21220 1.18613 1.21820 0.94367 0.91217 1.52033 0.91025 1.19915 0.86695 0.93217 0.81163 1.86082 1.51221 1.52437 1.50211 1.22665 0.97403 0.94164 1.00700 1.22248 0.87970 0.94679 0.96453 1.48598 1.27125 1.09094 1.49338 1.17814 0.80686 0.87454 0.78870 1.90829 1.34796 1.63867 1.53694 1.19436 0.94436 0.93204 1.04947 1.20106 0.98216 0.94569 1.03089 1.26190 1.00645 0.98904 1.05325 1.83880 1.03247 1.00031 1.60583 1.21959 0.90315 1.01181 1.11756 1.22732 0.94190 0.86537 1.02643 1.76815 1.02105 1.20233 1.14516 1.79004 1.07178 1.04417 1.15961 1.47767 1.14188 1.02464 1.40291 0.64545 1.74868 0.96380 1.22845 1.19704 1.22722 1.00015 0.79357 0.98889 0.92289 0.77932 0.88584 0.89922 0.92080 0.87899 0.81260 0.75876 0.94125 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.00 10.70 21.45 0.23 -51.77 16 2 C 0.03 1.37 5.25 84.65 0.44 1.82 16 3 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.56 -29.38 8.27 25.60 0.21 -29.17 16 8 H 0.07 3.62 7.80 -2.91 -0.02 3.60 16 9 C 0.23 11.46 0.88 -10.15 -0.01 11.45 16 10 O -0.59 -32.08 13.18 -148.98 -1.96 -34.05 16 11 C -0.11 -4.25 6.14 31.82 0.20 -4.06 16 12 C 0.11 3.65 6.00 86.77 0.52 4.17 16 13 N -0.61 -26.19 3.33 -815.95 -2.71 -28.90 16 14 C 0.56 24.54 7.01 86.53 0.61 25.15 16 15 O -0.55 -28.99 14.73 -4.24 -0.06 -29.05 16 16 C -0.10 -3.18 5.29 -20.82 -0.11 -3.29 16 17 C -0.13 -2.82 8.68 21.40 0.19 -2.63 16 18 C -0.17 -2.38 11.14 66.64 0.74 -1.64 16 19 S 0.26 4.50 23.29 -56.49 -1.32 3.19 16 20 C -0.13 -3.94 6.52 24.65 0.16 -3.78 16 21 C 0.22 7.55 8.02 137.03 1.10 8.64 16 22 N -0.26 -11.00 9.56 -52.49 -0.50 -11.50 16 23 N -0.07 -2.37 13.46 37.02 0.50 -1.88 16 24 N -0.20 -4.51 7.89 37.02 0.29 -4.22 16 25 H 0.50 5.34 8.96 -347.50 -3.11 2.22 16 26 N -0.28 -7.60 12.41 -52.44 -0.65 -8.25 16 27 C 0.11 5.80 5.41 86.86 0.47 6.27 16 28 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.37 21.40 7.48 -74.06 -0.55 20.84 16 30 H 0.10 3.28 8.03 -2.39 -0.02 3.27 16 31 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.10 2.51 6.02 -2.39 -0.01 2.50 16 34 H 0.17 3.02 6.53 -2.91 -0.02 3.00 16 35 H 0.22 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.04 2.44 7.31 -2.38 -0.02 2.42 16 37 H 0.05 2.42 8.03 -2.39 -0.02 2.40 16 Total: -1.00 -80.40 330.82 -2.14 -82.54 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -2.49 Total: 26.40 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 4.52 Total: 12.94 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -2.85 Total: -106.52 kcal Atomic # 8 Polarization: -61.07 SS G_CDS: -2.03 Total: -63.10 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.32 Total: 3.19 kcal Total: -80.40 -2.14 -82.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606345321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.668 kcal (2) G-P(sol) polarization free energy of solvation -80.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds