Wall clock time and date at job start Tue Mar 31 2020 19:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47103 * 270.00226 * 3 2 1 5 5 H 1.48503 * 109.46963 * 29.99572 * 3 2 1 6 6 H 1.48498 * 109.47478 * 149.99608 * 3 2 1 7 7 C 1.37876 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00268 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.88181 * 303.87833 * 9 7 2 11 11 C 1.55154 * 111.00825 * 179.97438 * 9 7 2 12 12 C 1.54316 * 102.94338 * 206.38590 * 11 9 7 13 13 N 1.47024 * 107.27533 * 22.18918 * 12 11 9 14 14 C 1.34768 * 125.65097 * 181.03011 * 13 12 11 15 15 O 1.21653 * 119.99897 * 185.01227 * 14 13 12 16 16 C 1.47069 * 120.00245 * 5.00418 * 14 13 12 17 17 C 1.34762 * 123.35493 * 315.50854 * 16 14 13 18 18 S 1.70384 * 111.24381 * 180.02562 * 17 16 14 19 19 C 1.75513 * 92.53797 * 359.97438 * 18 17 16 20 20 C 1.34056 * 110.30269 * 0.02562 * 19 18 17 21 21 C 1.48325 * 123.69046 * 180.26993 * 20 19 18 22 22 N 1.34091 * 126.68474 * 173.94036 * 21 20 19 23 23 N 1.28984 * 107.26438 * 179.97438 * 22 21 20 24 24 N 1.28726 * 108.95933 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.33435 * 180.02562 * 24 23 22 26 26 N 1.28870 * 109.33161 * 359.76715 * 24 23 22 27 27 C 1.47425 * 108.69856 * 1.28705 * 13 12 11 28 28 H 0.96997 * 119.99906 * 0.02562 * 1 2 3 29 29 H 0.96693 * 114.00493 * 56.11980 * 10 9 7 30 30 H 1.08992 * 110.72302 * 88.01637 * 11 9 7 31 31 H 1.09003 * 110.71485 * 324.74923 * 11 9 7 32 32 H 1.09001 * 109.87971 * 262.77420 * 12 11 9 33 33 H 1.08995 * 110.01484 * 141.68118 * 12 11 9 34 34 H 1.07999 * 124.37455 * 359.97438 * 17 16 14 35 35 H 1.08001 * 124.85217 * 180.02562 * 19 18 17 36 36 H 1.09005 * 110.36628 * 94.48579 * 27 13 12 37 37 H 1.09002 * 110.36919 * 216.80233 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.3514 -2.5679 1.1087 11 6 2.2274 -3.7050 0.0005 12 6 1.3978 -4.8214 -0.6678 13 7 0.3463 -4.1685 -1.4613 14 6 -0.6005 -4.8008 -2.1825 15 8 -1.3670 -4.1590 -2.8756 16 6 -0.7068 -6.2668 -2.1319 17 6 0.3581 -7.0897 -2.2011 18 16 -0.1175 -8.7235 -2.1143 19 6 -1.8161 -8.3028 -1.9782 20 6 -1.9688 -6.9712 -2.0025 21 6 -3.2835 -6.2919 -1.9012 22 7 -3.4977 -4.9717 -1.8055 23 7 -4.7736 -4.7947 -1.7394 24 7 -5.3580 -5.9406 -1.7902 25 1 -6.3169 -6.0832 -1.7591 26 7 -4.4695 -6.8683 -1.8943 27 6 0.5029 -2.7074 -1.3423 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2781 -1.8352 1.1503 30 1 2.4975 -3.9826 1.0193 31 1 3.1171 -3.4808 -0.5879 32 1 0.9464 -5.4553 0.0954 33 1 2.0346 -5.4209 -1.3183 34 1 1.3808 -6.7567 -2.2998 35 1 -2.6230 -9.0150 -1.8878 36 1 1.0938 -2.3204 -2.1725 37 1 -0.4729 -2.2225 -1.3117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606346048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:38 Heat of formation + Delta-G solvation = 91.834607 kcal Electronic energy + Delta-G solvation = -26732.101370 eV Core-core repulsion = 22833.009316 eV Total energy + Delta-G solvation = -3899.092054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.26206 -39.63863 -37.69256 -36.46907 -34.27298 -34.01393 -32.98382 -32.08728 -30.44198 -29.57723 -27.69661 -26.01914 -25.04435 -24.14037 -23.53631 -22.02352 -20.36504 -19.67690 -19.42174 -18.14928 -17.41252 -17.13484 -16.96844 -16.53609 -15.36684 -15.10742 -14.74296 -14.55620 -14.05741 -13.88153 -13.49837 -13.32941 -13.00891 -12.82378 -12.80332 -12.41231 -12.11495 -11.85183 -11.54248 -11.38547 -11.25214 -11.14698 -11.00852 -10.86666 -10.83884 -10.67202 -10.52145 -10.44832 -10.11649 -9.41200 -9.22976 -8.98281 -8.62938 -8.41804 -8.27866 -7.64438 -6.23240 -4.33195 0.61956 1.18650 1.33326 1.64116 1.72066 2.35073 2.85398 3.23743 3.31510 3.33768 3.45383 3.84164 3.89777 4.30054 4.36042 4.77676 5.00096 5.04652 5.28678 5.36579 5.47685 5.57046 5.68171 5.73668 5.86682 5.94838 6.00666 6.12085 6.29365 6.47739 6.56625 6.77623 6.92796 7.11297 7.33959 7.42397 7.80051 8.05160 8.32796 8.35987 8.69594 8.88283 9.36632 9.53504 10.83832 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.003941 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.385611 B = 7102.384246 C = 8528.367330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.119 4.119 12 C 0.105 3.895 13 N -0.602 5.602 14 C 0.577 3.423 15 O -0.512 6.512 16 C -0.102 4.102 17 C -0.222 4.222 18 S 0.203 5.797 19 C -0.195 4.195 20 C 0.009 3.991 21 C 0.230 3.770 22 N -0.212 5.212 23 N -0.053 5.053 24 N -0.237 5.237 25 H 0.472 0.528 26 N -0.300 5.300 27 C 0.097 3.903 28 H 0.271 0.729 29 H 0.386 0.614 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.179 0.821 35 H 0.178 0.822 36 H 0.059 0.941 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -18.355 -3.256 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.210 3.790 10 O -0.394 6.394 11 C -0.157 4.157 12 C -0.018 4.018 13 N -0.335 5.335 14 C 0.362 3.638 15 O -0.388 6.388 16 C -0.119 4.119 17 C -0.359 4.359 18 S 0.469 5.531 19 C -0.334 4.334 20 C -0.007 4.007 21 C -0.052 4.052 22 N -0.085 5.085 23 N -0.048 5.048 24 N -0.082 5.082 25 H 0.325 0.675 26 N -0.153 5.153 27 C -0.024 4.024 28 H 0.081 0.919 29 H 0.239 0.761 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.197 0.803 35 H 0.195 0.805 36 H 0.078 0.922 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.040 -19.282 -3.533 20.015 hybrid contribution -0.991 2.320 -0.184 2.529 sum -5.031 -16.962 -3.718 18.078 Atomic orbital electron populations 1.69576 1.05985 1.27969 1.49607 1.25078 0.95004 0.99718 0.93370 0.86411 0.79764 0.82503 0.78264 1.20420 1.21013 1.19721 1.21497 0.93655 0.90158 1.52436 0.91527 1.19608 0.85705 0.91535 0.82195 1.86056 1.51038 1.53059 1.49256 1.22635 0.97873 0.94990 1.00171 1.22076 0.89460 0.96360 0.93917 1.48533 1.28807 1.09508 1.46680 1.17005 0.80790 0.85145 0.80874 1.90830 1.41447 1.66534 1.40014 1.19894 0.90868 0.95762 1.05384 1.25347 1.03811 0.98331 1.08411 1.82907 0.97021 1.03961 1.69178 1.25632 1.01503 0.97945 1.08333 1.16841 0.87209 0.90864 1.05791 1.22900 0.91593 0.88193 1.02490 1.76645 1.03736 1.14044 1.14078 1.79089 1.02032 1.08919 1.14789 1.47729 1.11945 1.01861 1.46619 0.67494 1.74796 0.98415 1.19451 1.22647 1.23316 1.02656 0.76208 1.00210 0.91861 0.76148 0.90744 0.90496 0.92231 0.93063 0.80347 0.80468 0.92249 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 10.72 55.43 0.59 -23.63 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.08 8.25 -34.44 -0.28 -14.36 16 8 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 9 C 0.25 6.13 0.89 -89.51 -0.08 6.05 16 10 O -0.58 -15.36 13.19 -35.23 -0.46 -15.82 16 11 C -0.12 -2.35 6.12 -24.90 -0.15 -2.50 16 12 C 0.11 1.86 5.64 -3.07 -0.02 1.84 16 13 N -0.60 -12.77 3.32 -171.78 -0.57 -13.34 16 14 C 0.58 12.20 7.00 -12.68 -0.09 12.11 16 15 O -0.51 -12.59 15.02 5.23 0.08 -12.51 16 16 C -0.10 -1.69 5.51 -104.82 -0.58 -2.27 16 17 C -0.22 -2.78 9.44 29.50 0.28 -2.50 16 18 S 0.20 1.85 23.01 -107.50 -2.47 -0.62 16 19 C -0.19 -2.17 10.93 29.26 0.32 -1.85 16 20 C 0.01 0.14 5.99 -104.49 -0.63 -0.49 16 21 C 0.23 3.91 7.90 -156.27 -1.23 2.67 16 22 N -0.21 -4.23 9.73 32.14 0.31 -3.92 16 23 N -0.05 -0.87 13.47 60.35 0.81 -0.06 16 24 N -0.24 -2.80 7.90 60.35 0.48 -2.33 16 25 H 0.47 2.90 8.96 -340.36 -3.05 -0.15 16 26 N -0.30 -4.10 12.33 32.16 0.40 -3.70 16 27 C 0.10 2.39 5.62 -2.41 -0.01 2.37 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 10.59 6.93 45.56 0.32 10.91 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.72 6.15 -51.93 -0.32 0.40 16 34 H 0.18 1.95 6.08 -52.49 -0.32 1.64 16 35 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.06 1.48 8.04 -51.93 -0.42 1.06 16 37 H 0.08 2.35 7.69 -51.93 -0.40 1.95 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -33.88 330.42 -8.87 -42.75 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.42 Total: 9.87 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.57 Total: 2.86 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 2.02 Total: -46.97 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.39 Total: -28.33 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.47 Total: -0.62 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.88 -8.87 -42.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.581 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds