Wall clock time and date at job start Tue Mar 31 2020 19:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47103 * 270.00226 * 3 2 1 5 5 H 1.48503 * 109.46963 * 29.99572 * 3 2 1 6 6 H 1.48498 * 109.47478 * 149.99608 * 3 2 1 7 7 C 1.37876 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00268 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.88181 * 303.87833 * 9 7 2 11 11 C 1.55154 * 111.00825 * 179.97438 * 9 7 2 12 12 C 1.54316 * 102.94338 * 206.38590 * 11 9 7 13 13 N 1.47024 * 107.27533 * 22.18918 * 12 11 9 14 14 C 1.34768 * 125.65097 * 181.03011 * 13 12 11 15 15 O 1.21653 * 119.99897 * 185.01227 * 14 13 12 16 16 C 1.47069 * 120.00245 * 5.00418 * 14 13 12 17 17 C 1.34762 * 123.35493 * 315.50854 * 16 14 13 18 18 S 1.70384 * 111.24381 * 180.02562 * 17 16 14 19 19 C 1.75513 * 92.53797 * 359.97438 * 18 17 16 20 20 C 1.34056 * 110.30269 * 0.02562 * 19 18 17 21 21 C 1.48325 * 123.69046 * 180.26993 * 20 19 18 22 22 N 1.34091 * 126.68474 * 173.94036 * 21 20 19 23 23 N 1.28984 * 107.26438 * 179.97438 * 22 21 20 24 24 N 1.28726 * 108.95933 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.33435 * 180.02562 * 24 23 22 26 26 N 1.28870 * 109.33161 * 359.76715 * 24 23 22 27 27 C 1.47425 * 108.69856 * 1.28705 * 13 12 11 28 28 H 0.96997 * 119.99906 * 0.02562 * 1 2 3 29 29 H 0.96693 * 114.00493 * 56.11980 * 10 9 7 30 30 H 1.08992 * 110.72302 * 88.01637 * 11 9 7 31 31 H 1.09003 * 110.71485 * 324.74923 * 11 9 7 32 32 H 1.09001 * 109.87971 * 262.77420 * 12 11 9 33 33 H 1.08995 * 110.01484 * 141.68118 * 12 11 9 34 34 H 1.07999 * 124.37455 * 359.97438 * 17 16 14 35 35 H 1.08001 * 124.85217 * 180.02562 * 19 18 17 36 36 H 1.09005 * 110.36628 * 94.48579 * 27 13 12 37 37 H 1.09002 * 110.36919 * 216.80233 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 0.3514 -2.5679 1.1087 11 6 2.2274 -3.7050 0.0005 12 6 1.3978 -4.8214 -0.6678 13 7 0.3463 -4.1685 -1.4613 14 6 -0.6005 -4.8008 -2.1825 15 8 -1.3670 -4.1590 -2.8756 16 6 -0.7068 -6.2668 -2.1319 17 6 0.3581 -7.0897 -2.2011 18 16 -0.1175 -8.7235 -2.1143 19 6 -1.8161 -8.3028 -1.9782 20 6 -1.9688 -6.9712 -2.0025 21 6 -3.2835 -6.2919 -1.9012 22 7 -3.4977 -4.9717 -1.8055 23 7 -4.7736 -4.7947 -1.7394 24 7 -5.3580 -5.9406 -1.7902 25 1 -6.3169 -6.0832 -1.7591 26 7 -4.4695 -6.8683 -1.8943 27 6 0.5029 -2.7074 -1.3423 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2781 -1.8352 1.1503 30 1 2.4975 -3.9826 1.0193 31 1 3.1171 -3.4808 -0.5879 32 1 0.9464 -5.4553 0.0954 33 1 2.0346 -5.4209 -1.3183 34 1 1.3808 -6.7567 -2.2998 35 1 -2.6230 -9.0150 -1.8878 36 1 1.0938 -2.3204 -2.1725 37 1 -0.4729 -2.2225 -1.3117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606346048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:37 Heat of formation + Delta-G solvation = 64.169842 kcal Electronic energy + Delta-G solvation = -26733.301004 eV Core-core repulsion = 22833.009316 eV Total energy + Delta-G solvation = -3900.291688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.41435 -41.13350 -39.18219 -37.91945 -36.05743 -35.24291 -34.15683 -34.12363 -31.95628 -30.85720 -29.44104 -27.42636 -26.57900 -25.35969 -24.94133 -23.38048 -21.65956 -21.35518 -20.71632 -19.42404 -19.07607 -18.39961 -18.12697 -17.91134 -17.08159 -16.72289 -16.34820 -16.20813 -15.53936 -15.14641 -14.89747 -14.74593 -14.64319 -14.15708 -13.98612 -13.76712 -13.54833 -13.42799 -13.18839 -13.13637 -12.82658 -12.47044 -12.33738 -12.30503 -12.20284 -12.18538 -12.07214 -11.99764 -11.91707 -11.22364 -10.85422 -10.62942 -10.27730 -9.96098 -9.40525 -9.21927 -8.23345 -6.41262 -0.31582 0.05575 0.44285 0.50456 0.78280 1.42949 1.44267 1.45704 1.54789 1.63447 1.99088 2.37313 2.44910 2.76251 3.02592 3.25139 3.73241 3.81299 3.84194 4.16132 4.20730 4.26755 4.41883 4.44188 4.47952 4.65798 4.71839 4.79453 4.87809 5.07526 5.08841 5.12095 5.37612 5.46240 5.51420 5.64204 5.78716 6.06294 6.65334 6.77344 7.18092 7.30465 7.32822 7.40258 8.82146 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.003941 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.385611 B = 7102.384246 C = 8528.367330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.233 3.767 10 O -0.592 6.592 11 C -0.113 4.113 12 C 0.108 3.892 13 N -0.610 5.610 14 C 0.572 3.428 15 O -0.563 6.563 16 C -0.142 4.142 17 C -0.221 4.221 18 S 0.329 5.671 19 C -0.184 4.184 20 C -0.033 4.033 21 C 0.216 3.784 22 N -0.276 5.276 23 N -0.076 5.076 24 N -0.201 5.201 25 H 0.493 0.507 26 N -0.283 5.283 27 C 0.112 3.888 28 H 0.269 0.731 29 H 0.376 0.624 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.196 0.804 35 H 0.205 0.795 36 H 0.044 0.956 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 -22.174 -3.213 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.192 3.808 10 O -0.401 6.401 11 C -0.150 4.150 12 C -0.014 4.014 13 N -0.342 5.342 14 C 0.359 3.641 15 O -0.442 6.442 16 C -0.160 4.160 17 C -0.358 4.358 18 S 0.596 5.404 19 C -0.323 4.323 20 C -0.048 4.048 21 C -0.065 4.065 22 N -0.148 5.148 23 N -0.071 5.071 24 N -0.052 5.052 25 H 0.352 0.648 26 N -0.137 5.137 27 C -0.011 4.011 28 H 0.079 0.921 29 H 0.226 0.774 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.213 0.787 35 H 0.222 0.778 36 H 0.063 0.937 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.237 -23.140 -3.475 23.506 hybrid contribution -1.584 3.301 -0.224 3.668 sum -3.821 -19.839 -3.698 20.540 Atomic orbital electron populations 1.69718 1.07407 1.28435 1.50420 1.25881 0.95670 1.03048 0.93075 0.85425 0.78777 0.78469 0.78175 1.20255 1.21087 1.18589 1.21871 0.94123 0.91211 1.52200 0.90877 1.19897 0.86155 0.93404 0.81327 1.86043 1.51192 1.52563 1.50265 1.22652 0.97500 0.93364 1.01519 1.22260 0.88818 0.95775 0.94560 1.48591 1.30197 1.08060 1.47391 1.17787 0.79424 0.87370 0.79488 1.90779 1.43007 1.68390 1.42058 1.19516 0.93053 0.92955 1.10470 1.25691 1.03661 1.00722 1.05725 1.82587 0.93559 0.99200 1.65073 1.26090 1.04435 0.96692 1.05113 1.16960 0.86160 0.92290 1.09408 1.23382 0.93218 0.87524 1.02408 1.76621 1.05051 1.16410 1.16710 1.78981 1.01697 1.10354 1.16053 1.47783 1.12956 1.00719 1.43747 0.64766 1.74748 0.97660 1.18972 1.22320 1.22819 0.99557 0.78706 1.00049 0.92126 0.77388 0.89690 0.88817 0.91408 0.88397 0.78727 0.77844 0.93741 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.54 10.72 21.45 0.23 -52.31 16 2 C 0.02 1.27 5.30 84.65 0.45 1.71 16 3 Si 0.97 42.77 29.54 68.60 2.03 44.79 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.56 -29.56 8.25 25.60 0.21 -29.35 16 8 H 0.07 3.69 7.76 -2.91 -0.02 3.67 16 9 C 0.23 11.68 0.89 -10.07 -0.01 11.67 16 10 O -0.59 -32.40 13.19 -148.98 -1.97 -34.37 16 11 C -0.11 -4.31 6.12 31.78 0.19 -4.11 16 12 C 0.11 3.62 5.64 86.73 0.49 4.11 16 13 N -0.61 -26.53 3.32 -815.63 -2.71 -29.24 16 14 C 0.57 25.12 7.00 86.56 0.61 25.72 16 15 O -0.56 -29.77 15.02 -4.20 -0.06 -29.83 16 16 C -0.14 -4.62 5.51 -20.00 -0.11 -4.73 16 17 C -0.22 -4.74 9.44 67.02 0.63 -4.11 16 18 S 0.33 4.21 23.01 -56.49 -1.30 2.91 16 19 C -0.18 -3.42 10.93 66.87 0.73 -2.69 16 20 C -0.03 -0.98 5.99 -19.78 -0.12 -1.10 16 21 C 0.22 7.47 7.90 137.31 1.08 8.55 16 22 N -0.28 -11.71 9.73 -52.23 -0.51 -12.22 16 23 N -0.08 -2.64 13.47 37.02 0.50 -2.14 16 24 N -0.20 -4.76 7.90 37.02 0.29 -4.47 16 25 H 0.49 5.67 8.96 -347.53 -3.12 2.56 16 26 N -0.28 -7.55 12.33 -52.18 -0.64 -8.20 16 27 C 0.11 5.81 5.62 86.93 0.49 6.30 16 28 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 29 H 0.38 21.94 6.93 -74.06 -0.51 21.43 16 30 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.09 3.23 8.01 -2.39 -0.02 3.22 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.10 2.38 6.15 -2.39 -0.01 2.36 16 34 H 0.20 3.37 6.08 -2.91 -0.02 3.35 16 35 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.04 2.36 8.04 -2.38 -0.02 2.34 16 37 H 0.03 2.09 7.69 -2.39 -0.02 2.07 16 Total: -1.00 -81.96 330.42 -1.95 -83.91 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: -2.45 Total: 29.18 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 4.65 Total: 11.99 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -2.84 Total: -108.58 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -2.03 Total: -64.20 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.30 Total: 2.91 kcal Total: -81.96 -1.95 -83.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.076 kcal (2) G-P(sol) polarization free energy of solvation -81.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds