Wall clock time and date at job start Tue Mar 31 2020 19:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00180 * 2 1 4 4 H 1.48506 * 109.47094 * 240.00048 * 3 2 1 5 5 H 1.48500 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47231 * 119.99513 * 3 2 1 7 7 C 1.38802 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00322 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99763 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47167 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46999 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46828 * 180.02562 * 12 11 10 14 14 C 1.34737 * 116.99818 * 180.02562 * 13 12 11 15 15 O 1.21481 * 120.00305 * 359.97438 * 14 13 12 16 16 C 1.47602 * 119.99914 * 180.02562 * 14 13 12 17 17 C 1.40226 * 120.46878 * 180.02562 * 16 14 13 18 18 C 1.38056 * 118.37578 * 179.97438 * 17 16 14 19 19 C 1.39473 * 119.22189 * 359.97438 * 18 17 16 20 20 C 1.48312 * 119.56148 * 180.02562 * 19 18 17 21 21 N 1.34104 * 126.68265 * 0.02562 * 20 19 18 22 22 N 1.28986 * 107.26217 * 179.97438 * 21 20 19 23 23 N 1.28729 * 108.96161 * 359.97438 * 22 21 20 24 24 H 0.96995 * 125.33232 * 180.02562 * 23 22 21 25 25 N 1.28874 * 109.33141 * 0.02562 * 23 22 21 26 26 N 1.32745 * 120.87395 * 0.27098 * 19 18 17 27 27 C 1.31505 * 121.78092 * 359.44260 * 26 19 18 28 28 H 0.96999 * 120.00269 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47095 * 60.00263 * 10 9 7 30 30 H 1.09001 * 109.47261 * 300.00418 * 10 9 7 31 31 H 1.08994 * 109.46757 * 60.00129 * 11 10 9 32 32 H 1.08996 * 109.46976 * 300.00031 * 11 10 9 33 33 H 1.09002 * 109.47051 * 60.00749 * 12 11 10 34 34 H 1.08996 * 109.47343 * 299.99881 * 12 11 10 35 35 H 1.08002 * 120.81171 * 359.94490 * 17 16 14 36 36 H 1.07994 * 120.38878 * 179.97438 * 18 17 16 37 37 H 1.08008 * 119.66479 * 180.28558 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1514 -6.3077 -0.0018 13 8 2.6422 -7.6675 -0.0031 14 6 3.5520 -8.6613 -0.0032 15 8 4.7381 -8.3990 -0.0028 16 6 3.1075 -10.0688 -0.0050 17 6 4.0458 -11.1108 -0.0046 18 6 3.5822 -12.4112 -0.0058 19 6 2.2070 -12.6438 -0.0068 20 6 1.7007 -14.0378 -0.0075 21 7 2.4381 -15.1579 -0.0068 22 7 1.6197 -16.1549 -0.0072 23 7 0.4133 -15.7058 -0.0076 24 1 -0.3884 -16.2517 -0.0076 25 7 0.4378 -14.4173 -0.0080 26 7 1.3454 -11.6340 -0.0120 27 6 1.7461 -10.3815 -0.0055 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8895 30 1 3.1245 -3.7313 -0.8905 31 1 1.3710 -5.4840 -0.8914 32 1 1.3705 -5.4847 0.8885 33 1 3.7600 -6.1481 0.8882 34 1 3.7599 -6.1472 -0.8918 35 1 5.1053 -10.9012 -0.0039 36 1 4.2763 -13.2386 -0.0060 37 1 1.0151 -9.5864 -0.0054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606350794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:07 Heat of formation + Delta-G solvation = 67.044282 kcal Electronic energy + Delta-G solvation = -23512.766150 eV Core-core repulsion = 19612.599107 eV Total energy + Delta-G solvation = -3900.167043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.01895 -41.16722 -39.97062 -36.87193 -35.04558 -34.25804 -33.56581 -33.08909 -32.45818 -31.68678 -27.29042 -26.00206 -25.41660 -25.34922 -23.90249 -23.12202 -21.51759 -21.34201 -19.87351 -18.49201 -17.70905 -17.61497 -17.43519 -17.19320 -16.74996 -16.38107 -15.11972 -14.95623 -14.83079 -14.55888 -14.39546 -14.37033 -13.84695 -13.56884 -13.22254 -12.88208 -12.83287 -12.73048 -12.15399 -11.95215 -11.70655 -11.56335 -11.41491 -11.19268 -11.05505 -11.02046 -10.88327 -10.68160 -10.54267 -10.35852 -10.13385 -9.66691 -9.57450 -9.08202 -8.38107 -6.58174 -6.25942 -3.97330 -0.39471 0.58373 0.64404 1.45124 1.67110 2.29247 2.30260 2.77531 3.20338 3.22178 3.26792 3.27711 3.43542 3.50749 4.15424 4.18072 4.19829 4.30143 4.40067 4.50496 4.66182 4.93502 5.05474 5.10531 5.10713 5.15204 5.30782 5.38677 5.43353 5.48587 5.73234 5.80108 5.84337 5.88391 6.08599 6.29683 6.41136 6.62682 7.14557 7.46857 7.57468 7.57780 8.33194 9.20353 10.82103 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.035067 B = 0.001534 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.284018 B =18248.628116 C =19021.161089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.122 6.122 10 C -0.115 4.115 11 C -0.099 4.099 12 C 0.074 3.926 13 O -0.348 6.348 14 C 0.512 3.488 15 O -0.499 6.499 16 C -0.159 4.159 17 C -0.010 4.010 18 C -0.137 4.137 19 C 0.228 3.772 20 C 0.211 3.789 21 N -0.255 5.255 22 N -0.046 5.046 23 N -0.224 5.224 24 H 0.479 0.521 25 N -0.251 5.251 26 N -0.459 5.459 27 C 0.168 3.832 28 H 0.268 0.732 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -31.451 -0.001 31.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.137 4.137 12 C -0.001 4.001 13 O -0.264 6.264 14 C 0.355 3.645 15 O -0.388 6.388 16 C -0.163 4.163 17 C -0.035 4.035 18 C -0.159 4.159 19 C 0.090 3.910 20 C -0.070 4.070 21 N -0.130 5.130 22 N -0.041 5.041 23 N -0.071 5.071 24 H 0.334 0.666 25 N -0.104 5.104 26 N -0.168 5.168 27 C 0.009 3.991 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.625 -32.232 -0.009 32.273 hybrid contribution 2.264 1.685 0.003 2.822 sum 3.888 -30.548 -0.006 30.794 Atomic orbital electron populations 1.70002 1.05927 1.27549 1.46976 1.25010 0.95084 0.99100 0.94477 0.86211 0.79239 0.81128 0.78888 1.19904 1.20786 1.19901 1.22660 0.94568 0.90706 1.58901 0.90877 1.84657 1.08673 0.99190 1.96894 1.23185 1.03517 0.96294 1.03387 1.21302 0.96388 0.91525 1.04485 1.23365 0.97972 0.75805 1.02910 1.86508 1.39462 1.17099 1.83364 1.20706 0.84352 0.86055 0.73363 1.90866 1.17835 1.84847 1.45257 1.20418 0.96013 0.91485 1.08403 1.21734 1.01217 0.90372 0.90198 1.21974 0.95070 0.98190 1.00671 1.18000 0.89515 0.87085 0.96434 1.23109 0.85331 0.94434 1.04102 1.76110 1.24944 0.94886 1.17042 1.78956 0.88360 1.22029 1.14762 1.47894 1.10060 1.03784 1.45394 0.66621 1.75201 1.22238 0.94239 1.18680 1.67605 1.38057 0.99322 1.11859 1.23308 0.93519 0.92936 0.89370 0.92173 0.91690 0.91695 0.90197 0.90192 0.90826 0.90833 0.82205 0.82301 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.66 9.50 30.94 0.29 -14.37 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.12 -3.11 21.44 -107.50 -2.30 -5.41 16 10 C -0.12 -2.21 5.67 37.16 0.21 -2.00 16 11 C -0.10 -1.50 5.60 -26.73 -0.15 -1.65 16 12 C 0.07 0.98 5.48 37.15 0.20 1.18 16 13 O -0.35 -4.25 9.49 -40.59 -0.39 -4.63 16 14 C 0.51 6.01 7.90 34.55 0.27 6.28 16 15 O -0.50 -6.98 16.20 -19.25 -0.31 -7.29 16 16 C -0.16 -1.48 5.89 -104.79 -0.62 -2.10 16 17 C -0.01 -0.07 9.70 -38.90 -0.38 -0.45 16 18 C -0.14 -0.98 9.72 -39.19 -0.38 -1.36 16 19 C 0.23 2.07 6.76 -82.87 -0.56 1.51 16 20 C 0.21 1.92 8.02 -156.27 -1.25 0.67 16 21 N -0.26 -2.24 12.20 32.14 0.39 -1.85 16 22 N -0.05 -0.33 13.47 60.35 0.81 0.48 16 23 N -0.22 -1.13 7.90 60.35 0.48 -0.65 16 24 H 0.48 0.07 8.96 -340.36 -3.05 -2.98 16 25 N -0.25 -2.07 12.38 32.16 0.40 -1.67 16 26 N -0.46 -4.58 10.27 -9.43 -0.10 -4.67 16 27 C 0.17 1.51 10.78 -17.15 -0.18 1.33 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 30 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.16 1.00 7.73 -52.49 -0.41 0.60 16 36 H 0.16 0.82 7.86 -52.49 -0.41 0.41 16 37 H 0.19 1.41 7.61 -52.48 -0.40 1.01 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -34.77 355.06 -8.95 -43.72 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -6.35 Total: -5.71 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.64 Total: -9.02 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 2.72 Total: -33.23 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.70 Total: -11.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.30 Total: -5.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.77 -8.95 -43.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.760 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds