Wall clock time and date at job start Tue Mar 31 2020 19:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00180 * 2 1 4 4 H 1.48506 * 109.47094 * 240.00048 * 3 2 1 5 5 H 1.48500 * 109.46830 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47231 * 119.99513 * 3 2 1 7 7 C 1.38802 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00322 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99763 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47167 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.46999 * 179.97438 * 11 10 9 13 13 O 1.45200 * 109.46828 * 180.02562 * 12 11 10 14 14 C 1.34737 * 116.99818 * 180.02562 * 13 12 11 15 15 O 1.21481 * 120.00305 * 359.97438 * 14 13 12 16 16 C 1.47602 * 119.99914 * 180.02562 * 14 13 12 17 17 C 1.40226 * 120.46878 * 180.02562 * 16 14 13 18 18 C 1.38056 * 118.37578 * 179.97438 * 17 16 14 19 19 C 1.39473 * 119.22189 * 359.97438 * 18 17 16 20 20 C 1.48312 * 119.56148 * 180.02562 * 19 18 17 21 21 N 1.34104 * 126.68265 * 0.02562 * 20 19 18 22 22 N 1.28986 * 107.26217 * 179.97438 * 21 20 19 23 23 N 1.28729 * 108.96161 * 359.97438 * 22 21 20 24 24 H 0.96995 * 125.33232 * 180.02562 * 23 22 21 25 25 N 1.28874 * 109.33141 * 0.02562 * 23 22 21 26 26 N 1.32745 * 120.87395 * 0.27098 * 19 18 17 27 27 C 1.31505 * 121.78092 * 359.44260 * 26 19 18 28 28 H 0.96999 * 120.00269 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47095 * 60.00263 * 10 9 7 30 30 H 1.09001 * 109.47261 * 300.00418 * 10 9 7 31 31 H 1.08994 * 109.46757 * 60.00129 * 11 10 9 32 32 H 1.08996 * 109.46976 * 300.00031 * 11 10 9 33 33 H 1.09002 * 109.47051 * 60.00749 * 12 11 10 34 34 H 1.08996 * 109.47343 * 299.99881 * 12 11 10 35 35 H 1.08002 * 120.81171 * 359.94490 * 17 16 14 36 36 H 1.07994 * 120.38878 * 179.97438 * 18 17 16 37 37 H 1.08008 * 119.66479 * 180.28558 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1514 -6.3077 -0.0018 13 8 2.6422 -7.6675 -0.0031 14 6 3.5520 -8.6613 -0.0032 15 8 4.7381 -8.3990 -0.0028 16 6 3.1075 -10.0688 -0.0050 17 6 4.0458 -11.1108 -0.0046 18 6 3.5822 -12.4112 -0.0058 19 6 2.2070 -12.6438 -0.0068 20 6 1.7007 -14.0378 -0.0075 21 7 2.4381 -15.1579 -0.0068 22 7 1.6197 -16.1549 -0.0072 23 7 0.4133 -15.7058 -0.0076 24 1 -0.3884 -16.2517 -0.0076 25 7 0.4378 -14.4173 -0.0080 26 7 1.3454 -11.6340 -0.0120 27 6 1.7461 -10.3815 -0.0055 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8895 30 1 3.1245 -3.7313 -0.8905 31 1 1.3710 -5.4840 -0.8914 32 1 1.3705 -5.4847 0.8885 33 1 3.7600 -6.1481 0.8882 34 1 3.7599 -6.1472 -0.8918 35 1 5.1053 -10.9012 -0.0039 36 1 4.2763 -13.2386 -0.0060 37 1 1.0151 -9.5864 -0.0054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606350794.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:06 Heat of formation + Delta-G solvation = 44.118946 kcal Electronic energy + Delta-G solvation = -23513.760267 eV Core-core repulsion = 19612.599107 eV Total energy + Delta-G solvation = -3901.161160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.58594 -41.96788 -40.80353 -37.88713 -35.62918 -34.99752 -34.75243 -34.55813 -33.74085 -32.36430 -28.42469 -27.67339 -26.66305 -25.98789 -24.54148 -23.84339 -22.72774 -22.24164 -20.41220 -19.64311 -19.19265 -18.36242 -18.27345 -17.93323 -17.76888 -17.19434 -16.88104 -16.20218 -16.05363 -15.66131 -15.21131 -15.15121 -14.97031 -14.46143 -14.24622 -14.08950 -13.91152 -13.77438 -13.35655 -13.13001 -12.92423 -12.62736 -12.52603 -12.40399 -12.38866 -12.30575 -12.17429 -11.96978 -11.50319 -11.47958 -11.18334 -11.12412 -10.82028 -10.33646 -10.22602 -8.65731 -8.36466 -6.12683 -1.08188 0.02749 0.03412 0.75277 1.23323 1.28690 1.39144 1.42238 1.47602 1.50322 1.81886 2.19477 2.28936 2.59835 2.84184 2.98164 3.28024 3.41442 3.55212 3.62476 3.79627 3.83228 3.89460 3.99411 4.00929 4.18938 4.33651 4.36760 4.51374 4.59295 4.71409 4.78011 4.87818 5.05933 5.12258 5.25148 5.35903 5.41276 5.52472 6.18950 6.45600 6.56335 6.99733 7.06110 8.72475 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.035067 B = 0.001534 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.284018 B =18248.628116 C =19021.161089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.074 0.926 9 S -0.185 6.185 10 C -0.093 4.093 11 C -0.087 4.087 12 C 0.082 3.918 13 O -0.347 6.347 14 C 0.518 3.482 15 O -0.524 6.524 16 C -0.169 4.169 17 C 0.000 4.000 18 C -0.126 4.126 19 C 0.220 3.780 20 C 0.198 3.802 21 N -0.269 5.269 22 N -0.049 5.049 23 N -0.197 5.197 24 H 0.497 0.503 25 N -0.266 5.266 26 N -0.479 5.479 27 C 0.170 3.830 28 H 0.272 0.728 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 -32.510 0.000 32.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.690 4.690 8 H 0.093 0.907 9 S 0.044 5.956 10 C -0.241 4.241 11 C -0.126 4.126 12 C 0.007 3.993 13 O -0.264 6.264 14 C 0.362 3.638 15 O -0.414 6.414 16 C -0.173 4.173 17 C -0.026 4.026 18 C -0.148 4.148 19 C 0.082 3.918 20 C -0.082 4.082 21 N -0.142 5.142 22 N -0.043 5.043 23 N -0.049 5.049 24 H 0.357 0.643 25 N -0.119 5.119 26 N -0.189 5.189 27 C 0.010 3.990 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.193 0.807 36 H 0.198 0.802 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.760 -33.331 -0.008 33.446 hybrid contribution 1.861 1.813 0.003 2.598 sum 4.621 -31.519 -0.005 31.856 Atomic orbital electron populations 1.70135 1.07639 1.28642 1.47839 1.26035 0.96002 1.03029 0.93725 0.85091 0.77953 0.76200 0.79335 1.18972 1.20040 1.18962 1.23043 0.94882 0.92034 1.59052 0.90735 1.84631 1.13151 1.00783 1.97066 1.23078 1.00757 0.96571 1.03743 1.21118 0.97094 0.89689 1.04681 1.23110 0.96689 0.76067 1.03441 1.86492 1.39619 1.16772 1.83482 1.21016 0.83874 0.86526 0.72353 1.90856 1.18683 1.85178 1.46659 1.20325 0.96525 0.90376 1.10049 1.21930 1.01687 0.90016 0.88927 1.22146 0.94612 0.98553 0.99450 1.18233 0.90266 0.87023 0.96291 1.23189 0.85646 0.94618 1.04781 1.76091 1.25479 0.94929 1.17740 1.78898 0.88882 1.21727 1.14839 1.47928 1.10403 1.03136 1.43406 0.64346 1.75156 1.22208 0.95438 1.19098 1.67599 1.38748 0.99712 1.12847 1.23411 0.93638 0.92957 0.88962 0.91938 0.91260 0.91268 0.90063 0.90053 0.90348 0.90360 0.80720 0.80220 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.02 13.22 21.65 0.29 -53.73 16 2 C 0.02 0.97 5.49 84.86 0.47 1.44 16 3 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.54 -30.77 9.50 67.95 0.65 -30.12 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.18 -9.54 21.44 -56.49 -1.21 -10.75 16 10 C -0.09 -3.50 5.67 71.98 0.41 -3.09 16 11 C -0.09 -2.57 5.60 30.59 0.17 -2.40 16 12 C 0.08 2.04 5.48 71.98 0.39 2.44 16 13 O -0.35 -8.04 9.49 -56.47 -0.54 -8.57 16 14 C 0.52 11.50 7.90 70.29 0.56 12.06 16 15 O -0.52 -13.97 16.20 19.90 0.32 -13.64 16 16 C -0.17 -2.93 5.89 -19.97 -0.12 -3.05 16 17 C 0.00 0.00 9.70 22.71 0.22 0.22 16 18 C -0.13 -1.58 9.72 22.52 0.22 -1.36 16 19 C 0.22 3.75 6.76 41.99 0.28 4.04 16 20 C 0.20 3.40 8.02 137.30 1.10 4.50 16 21 N -0.27 -4.38 12.20 -52.23 -0.64 -5.02 16 22 N -0.05 -0.63 13.47 37.02 0.50 -0.13 16 23 N -0.20 -1.69 7.90 37.02 0.29 -1.40 16 24 H 0.50 -0.67 8.96 -347.53 -3.12 -3.79 16 25 N -0.27 -4.09 12.38 -52.18 -0.65 -4.73 16 26 N -0.48 -9.19 10.27 -183.75 -1.89 -11.08 16 27 C 0.17 2.91 10.78 85.09 0.92 3.83 16 28 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.18 1.82 7.73 -2.91 -0.02 1.80 16 36 H 0.18 1.46 7.86 -2.91 -0.02 1.44 16 37 H 0.19 2.80 7.61 -2.91 -0.02 2.78 16 Total: -1.00 -74.58 355.06 1.80 -72.78 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -1.97 Total: 2.42 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 5.27 Total: -11.51 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.09 Total: -76.09 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.21 Total: -22.22 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -9.54 SS G_CDS: -1.21 Total: -10.75 kcal Total: -74.58 1.80 -72.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350794.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.896 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds