Wall clock time and date at job start Tue Mar 31 2020 19:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 120.00360 * 2 1 4 4 H 1.48494 * 109.46963 * 270.00223 * 3 2 1 5 5 H 1.48498 * 109.46609 * 30.00089 * 3 2 1 6 6 H 1.48491 * 109.47215 * 149.99846 * 3 2 1 7 7 C 1.38803 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99695 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00096 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00048 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47361 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47307 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.47124 * 180.02562 * 12 11 10 14 14 C 1.34683 * 116.99853 * 180.02562 * 13 12 11 15 15 O 1.21432 * 120.00124 * 359.97438 * 14 13 12 16 16 C 1.48087 * 119.99735 * 179.97438 * 14 13 12 17 17 C 1.39378 * 119.66286 * 180.02562 * 16 14 13 18 18 C 1.38687 * 119.24854 * 179.74454 * 17 16 14 19 19 C 1.38403 * 118.58368 * 0.50878 * 18 17 16 20 20 C 1.39616 * 119.26605 * 359.47048 * 19 18 17 21 21 C 1.48444 * 119.65420 * 180.25764 * 20 19 18 22 22 N 1.34061 * 126.67426 * 0.02648 * 21 20 19 23 23 N 1.28987 * 107.26727 * 179.97438 * 22 21 20 24 24 N 1.28729 * 108.94616 * 0.02562 * 23 22 21 25 25 H 0.96997 * 125.34061 * 180.02562 * 24 23 22 26 26 N 1.28873 * 109.31887 * 359.74608 * 24 23 22 27 27 N 1.32276 * 120.69616 * 0.28634 * 20 19 18 28 28 H 0.97005 * 120.00016 * 0.02562 * 1 2 3 29 29 H 1.09011 * 109.46900 * 59.99830 * 10 9 7 30 30 H 1.09003 * 109.47671 * 300.00391 * 10 9 7 31 31 H 1.08995 * 109.46919 * 60.00267 * 11 10 9 32 32 H 1.08998 * 109.47184 * 300.00327 * 11 10 9 33 33 H 1.09008 * 109.47302 * 60.00305 * 12 11 10 34 34 H 1.08998 * 109.47151 * 300.00207 * 12 11 10 35 35 H 1.08000 * 120.37814 * 0.02562 * 17 16 14 36 36 H 1.08003 * 120.71146 * 180.28179 * 18 17 16 37 37 H 1.08002 * 120.37089 * 179.75558 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0017 11 6 5.5957 -3.2365 0.0008 12 6 5.8613 -4.7432 0.0017 13 8 7.2935 -4.9821 0.0014 14 6 7.6990 -6.2665 0.0016 15 8 6.8791 -7.1621 0.0025 16 6 9.1450 -6.5863 0.0008 17 6 9.5569 -7.9178 0.0005 18 6 10.9132 -8.2075 -0.0057 19 6 11.8146 -7.1573 -0.0006 20 6 11.3351 -5.8461 -0.0007 21 6 12.2943 -4.7132 -0.0010 22 7 13.6323 -4.7969 -0.0017 23 7 14.0913 -3.5915 -0.0023 24 7 13.1022 -2.7676 -0.0015 25 1 13.1775 -1.8006 -0.0020 26 7 11.9963 -3.4292 -0.0057 27 7 10.0349 -5.6027 0.0001 28 1 -0.4850 0.8401 -0.0004 29 1 3.6431 -3.4326 -0.8877 30 1 3.6439 -3.4307 0.8923 31 1 6.0393 -2.7884 0.8899 32 1 6.0379 -2.7905 -0.8901 33 1 5.4177 -5.1909 -0.8877 34 1 5.4190 -5.1895 0.8923 35 1 8.8282 -8.7149 0.0004 36 1 11.2586 -9.2308 -0.0107 37 1 12.8774 -7.3499 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606351034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:10 Heat of formation + Delta-G solvation = 71.724486 kcal Electronic energy + Delta-G solvation = -24007.913460 eV Core-core repulsion = 20107.949366 eV Total energy + Delta-G solvation = -3899.964094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.91323 -41.20561 -39.94258 -36.86040 -34.93182 -34.15061 -33.72546 -33.09483 -32.45376 -31.57545 -27.15834 -25.95031 -25.67459 -25.28674 -24.52011 -22.67624 -21.65547 -21.37025 -19.67558 -18.41891 -17.72718 -17.60391 -17.41727 -16.75652 -16.59678 -16.54281 -15.64859 -15.07260 -15.00903 -14.55476 -14.37269 -14.30209 -13.95174 -13.31028 -12.95636 -12.87720 -12.83825 -12.56872 -12.47206 -11.85780 -11.58305 -11.53277 -11.51266 -11.22115 -11.14398 -11.08437 -10.98445 -10.57234 -10.36586 -10.35272 -10.14540 -9.82240 -9.58611 -9.02245 -8.60351 -6.97384 -6.29765 -4.02790 -0.16894 0.29509 0.71801 1.60727 1.78602 2.19900 2.23926 2.80474 3.00157 3.28759 3.29186 3.44177 3.46132 3.56196 4.04602 4.28890 4.30258 4.31475 4.41021 4.49095 4.75195 4.82287 4.92283 5.04679 5.08452 5.09335 5.13215 5.32542 5.39813 5.43302 5.68982 5.71686 5.81639 5.94272 6.04166 6.27031 6.35609 6.57429 6.99256 7.54166 7.68513 7.93871 8.43208 9.15720 10.79614 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002168 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.383632 B =12911.597013 C =14911.229844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.092 3.908 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.504 4.504 8 H 0.089 0.911 9 S -0.206 6.206 10 C -0.084 4.084 11 C -0.101 4.101 12 C 0.070 3.930 13 O -0.327 6.327 14 C 0.523 3.477 15 O -0.496 6.496 16 C 0.102 3.898 17 C -0.090 4.090 18 C -0.079 4.079 19 C -0.098 4.098 20 C 0.199 3.801 21 C 0.214 3.786 22 N -0.260 5.260 23 N -0.047 5.047 24 N -0.223 5.223 25 H 0.479 0.521 26 N -0.248 5.248 27 N -0.401 5.401 28 H 0.271 0.729 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.267 -14.694 0.077 32.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.117 4.117 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.652 4.652 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.232 4.232 11 C -0.139 4.139 12 C -0.005 4.005 13 O -0.242 6.242 14 C 0.365 3.635 15 O -0.383 6.383 16 C -0.036 4.036 17 C -0.111 4.111 18 C -0.105 4.105 19 C -0.120 4.120 20 C 0.056 3.944 21 C -0.067 4.067 22 N -0.135 5.135 23 N -0.042 5.042 24 N -0.070 5.070 25 H 0.334 0.666 26 N -0.100 5.100 27 N -0.114 5.114 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 29.764 -12.796 0.076 32.398 hybrid contribution -1.050 -0.569 -0.033 1.195 sum 28.713 -13.365 0.043 31.671 Atomic orbital electron populations 1.69936 1.05911 1.27739 1.48139 1.24793 0.94520 0.99024 0.93327 0.86672 0.81757 0.83215 0.79730 1.19343 1.20068 1.16125 1.22126 0.86989 0.97498 1.58545 0.89293 1.84183 1.11749 1.04358 1.97549 1.22948 0.95977 1.00054 1.04227 1.21317 0.95827 0.92140 1.04615 1.23339 0.75881 0.98303 1.02969 1.86658 1.28630 1.26534 1.82390 1.20585 0.87772 0.81870 0.73243 1.90875 1.53792 1.48063 1.45593 1.20027 0.90852 0.89636 1.03071 1.22330 0.97549 0.96614 0.94608 1.21626 0.91784 1.00532 0.96522 1.22332 1.02703 0.91350 0.95594 1.17665 0.87725 0.88213 1.00779 1.23018 0.89869 0.89737 1.04113 1.76050 1.07217 1.12691 1.17514 1.78927 1.16235 0.94195 1.14865 1.47902 1.00616 1.13206 1.45317 0.66553 1.75253 1.10744 1.05574 1.18479 1.67422 1.01117 1.36030 1.06823 0.91939 0.90996 0.90947 0.90142 0.90158 0.90730 0.90735 0.82291 0.82440 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.48 27.74 -169.99 -4.72 16.76 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 7 C -0.50 -14.59 10.04 30.94 0.31 -14.28 16 8 H 0.09 2.73 8.03 -52.49 -0.42 2.31 16 9 S -0.21 -5.01 19.41 -107.50 -2.09 -7.09 16 10 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 11 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 12 C 0.07 0.99 5.47 37.16 0.20 1.19 16 13 O -0.33 -4.73 10.03 -40.45 -0.41 -5.13 16 14 C 0.52 6.92 7.95 34.77 0.28 7.20 16 15 O -0.50 -7.12 16.10 -19.21 -0.31 -7.43 16 16 C 0.10 1.12 6.75 -83.05 -0.56 0.56 16 17 C -0.09 -0.65 9.63 -38.99 -0.38 -1.03 16 18 C -0.08 -0.38 10.16 -39.35 -0.40 -0.78 16 19 C -0.10 -0.61 9.74 -39.01 -0.38 -0.99 16 20 C 0.20 1.92 6.76 -82.96 -0.56 1.36 16 21 C 0.21 2.16 8.03 -156.29 -1.26 0.91 16 22 N -0.26 -2.45 12.21 32.15 0.39 -2.06 16 23 N -0.05 -0.39 13.47 60.35 0.81 0.42 16 24 N -0.22 -1.48 7.90 60.35 0.48 -1.01 16 25 H 0.48 1.00 8.96 -340.37 -3.05 -2.05 16 26 N -0.25 -2.50 12.38 32.17 0.40 -2.10 16 27 N -0.40 -4.73 10.04 -6.37 -0.06 -4.79 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.07 1.36 8.14 -51.91 -0.42 0.94 16 30 H 0.07 1.37 8.14 -51.91 -0.42 0.95 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.16 0.94 7.63 -52.49 -0.40 0.54 16 36 H 0.16 0.18 8.06 -52.48 -0.42 -0.25 16 37 H 0.16 0.64 7.87 -52.49 -0.41 0.23 16 LS Contribution 353.21 15.07 5.32 5.32 Total: -1.00 -35.92 353.21 -8.58 -44.50 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -6.40 Total: -5.07 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.78 Total: -6.40 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 2.79 Total: -35.45 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.72 Total: -12.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.76 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -2.09 Total: -7.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.92 -8.58 -44.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.226 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds