Wall clock time and date at job start Tue Mar 31 2020 19:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 120.00360 * 2 1 4 4 H 1.48494 * 109.46963 * 270.00223 * 3 2 1 5 5 H 1.48498 * 109.46609 * 30.00089 * 3 2 1 6 6 H 1.48491 * 109.47215 * 149.99846 * 3 2 1 7 7 C 1.38803 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99695 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00096 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00048 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47361 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47307 * 180.02562 * 11 10 9 13 13 O 1.45197 * 109.47124 * 180.02562 * 12 11 10 14 14 C 1.34683 * 116.99853 * 180.02562 * 13 12 11 15 15 O 1.21432 * 120.00124 * 359.97438 * 14 13 12 16 16 C 1.48087 * 119.99735 * 179.97438 * 14 13 12 17 17 C 1.39378 * 119.66286 * 180.02562 * 16 14 13 18 18 C 1.38687 * 119.24854 * 179.74454 * 17 16 14 19 19 C 1.38403 * 118.58368 * 0.50878 * 18 17 16 20 20 C 1.39616 * 119.26605 * 359.47048 * 19 18 17 21 21 C 1.48444 * 119.65420 * 180.25764 * 20 19 18 22 22 N 1.34061 * 126.67426 * 0.02648 * 21 20 19 23 23 N 1.28987 * 107.26727 * 179.97438 * 22 21 20 24 24 N 1.28729 * 108.94616 * 0.02562 * 23 22 21 25 25 H 0.96997 * 125.34061 * 180.02562 * 24 23 22 26 26 N 1.28873 * 109.31887 * 359.74608 * 24 23 22 27 27 N 1.32276 * 120.69616 * 0.28634 * 20 19 18 28 28 H 0.97005 * 120.00016 * 0.02562 * 1 2 3 29 29 H 1.09011 * 109.46900 * 59.99830 * 10 9 7 30 30 H 1.09003 * 109.47671 * 300.00391 * 10 9 7 31 31 H 1.08995 * 109.46919 * 60.00267 * 11 10 9 32 32 H 1.08998 * 109.47184 * 300.00327 * 11 10 9 33 33 H 1.09008 * 109.47302 * 60.00305 * 12 11 10 34 34 H 1.08998 * 109.47151 * 300.00207 * 12 11 10 35 35 H 1.08000 * 120.37814 * 0.02562 * 17 16 14 36 36 H 1.08003 * 120.71146 * 180.28179 * 18 17 16 37 37 H 1.08002 * 120.37089 * 179.75558 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0865 -2.9846 0.0017 11 6 5.5957 -3.2365 0.0008 12 6 5.8613 -4.7432 0.0017 13 8 7.2935 -4.9821 0.0014 14 6 7.6990 -6.2665 0.0016 15 8 6.8791 -7.1621 0.0025 16 6 9.1450 -6.5863 0.0008 17 6 9.5569 -7.9178 0.0005 18 6 10.9132 -8.2075 -0.0057 19 6 11.8146 -7.1573 -0.0006 20 6 11.3351 -5.8461 -0.0007 21 6 12.2943 -4.7132 -0.0010 22 7 13.6323 -4.7969 -0.0017 23 7 14.0913 -3.5915 -0.0023 24 7 13.1022 -2.7676 -0.0015 25 1 13.1775 -1.8006 -0.0020 26 7 11.9963 -3.4292 -0.0057 27 7 10.0349 -5.6027 0.0001 28 1 -0.4850 0.8401 -0.0004 29 1 3.6431 -3.4326 -0.8877 30 1 3.6439 -3.4307 0.8923 31 1 6.0393 -2.7884 0.8899 32 1 6.0379 -2.7905 -0.8901 33 1 5.4177 -5.1909 -0.8877 34 1 5.4190 -5.1895 0.8923 35 1 8.8282 -8.7149 0.0004 36 1 11.2586 -9.2308 -0.0107 37 1 12.8774 -7.3499 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606351034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:10 Heat of formation + Delta-G solvation = 46.632121 kcal Electronic energy + Delta-G solvation = -24009.001546 eV Core-core repulsion = 20107.949366 eV Total energy + Delta-G solvation = -3901.052180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.55212 -42.00278 -40.79547 -37.94047 -35.57073 -34.98934 -34.78655 -34.69087 -33.76681 -32.22467 -28.43036 -27.82628 -26.61718 -26.04060 -25.26591 -23.30266 -22.82586 -22.37560 -20.34161 -19.68073 -19.14879 -18.50403 -18.24815 -17.83924 -17.51337 -17.11112 -17.05219 -16.37524 -16.19353 -16.06128 -15.19667 -15.13144 -14.96556 -14.62359 -14.28885 -14.11644 -14.01214 -13.55645 -13.39152 -13.12837 -13.06229 -12.62919 -12.49622 -12.43988 -12.35349 -12.25633 -12.16492 -12.03077 -11.75513 -11.55124 -11.17461 -11.10719 -10.86502 -10.60928 -10.21196 -9.01737 -8.52718 -6.24838 -0.78362 -0.33337 0.09680 0.96065 1.02959 1.29675 1.31820 1.34926 1.35180 1.48237 1.76487 2.19071 2.24031 2.63372 2.65354 2.83972 2.85213 3.27440 3.67878 3.77924 3.81603 3.89440 3.91942 3.92901 4.09335 4.18934 4.28054 4.33019 4.45025 4.50381 4.62994 4.91362 4.93836 4.96900 5.05409 5.28004 5.34273 5.53322 5.68995 6.09821 6.25401 6.63292 6.90945 7.03555 8.60233 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.002168 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.383632 B =12911.597013 C =14911.229844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.037 3.963 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.228 1.228 7 C -0.524 4.524 8 H 0.053 0.947 9 S -0.210 6.210 10 C -0.072 4.072 11 C -0.088 4.088 12 C 0.076 3.924 13 O -0.340 6.340 14 C 0.522 3.478 15 O -0.514 6.514 16 C 0.074 3.926 17 C -0.081 4.081 18 C -0.057 4.057 19 C -0.083 4.083 20 C 0.177 3.823 21 C 0.206 3.794 22 N -0.268 5.268 23 N -0.048 5.048 24 N -0.201 5.201 25 H 0.495 0.505 26 N -0.277 5.277 27 N -0.436 5.436 28 H 0.277 0.723 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.173 0.827 36 H 0.206 0.794 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.189 -15.710 0.098 35.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.168 4.168 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.152 1.152 7 C -0.671 4.671 8 H 0.071 0.929 9 S 0.018 5.982 10 C -0.220 4.220 11 C -0.126 4.126 12 C 0.000 4.000 13 O -0.255 6.255 14 C 0.366 3.634 15 O -0.403 6.403 16 C -0.063 4.063 17 C -0.102 4.102 18 C -0.082 4.082 19 C -0.104 4.104 20 C 0.034 3.966 21 C -0.075 4.075 22 N -0.142 5.142 23 N -0.043 5.043 24 N -0.052 5.052 25 H 0.354 0.646 26 N -0.130 5.130 27 N -0.149 5.149 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.191 0.809 36 H 0.223 0.777 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 32.698 -13.807 0.099 35.494 hybrid contribution -1.878 -0.388 -0.044 1.918 sum 30.820 -14.195 0.054 33.932 Atomic orbital electron populations 1.70036 1.07634 1.29139 1.49097 1.25782 0.95439 1.02800 0.92741 0.85715 0.80786 0.78621 0.80251 1.18575 1.18715 1.15152 1.22338 0.89947 0.96379 1.58454 0.92910 1.83868 1.07639 1.09104 1.97597 1.22959 0.98552 0.96077 1.04435 1.21123 0.93036 0.93633 1.04813 1.23145 0.76422 0.96858 1.03536 1.86644 1.28280 1.27809 1.82760 1.21093 0.88974 0.81013 0.72344 1.90849 1.54573 1.48147 1.46721 1.19924 0.89305 0.91053 1.06065 1.22591 0.99192 0.95194 0.93177 1.22150 0.90092 1.02281 0.93719 1.22676 1.04219 0.90121 0.93398 1.17927 0.87044 0.89522 1.02058 1.23252 0.90253 0.89958 1.04081 1.76021 1.06891 1.13145 1.18164 1.78858 1.16412 0.94260 1.14799 1.47910 0.99596 1.13918 1.43811 0.64585 1.75204 1.12046 1.06153 1.19616 1.67213 1.02273 1.37218 1.08181 0.91366 0.90826 0.90781 0.89958 0.89950 0.90217 0.90226 0.80911 0.77694 0.80031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.91 13.97 21.65 0.30 -56.60 16 2 C 0.04 2.19 5.50 84.86 0.47 2.66 16 3 Si 0.93 44.17 27.74 68.60 1.90 46.07 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.23 -10.47 6.74 99.48 0.67 -9.80 16 7 C -0.52 -30.96 10.04 67.96 0.68 -30.28 16 8 H 0.05 3.38 8.03 -2.91 -0.02 3.36 16 9 S -0.21 -10.13 19.41 -56.49 -1.10 -11.23 16 10 C -0.07 -2.73 5.67 71.98 0.41 -2.32 16 11 C -0.09 -2.69 5.60 30.59 0.17 -2.52 16 12 C 0.08 2.09 5.47 71.98 0.39 2.48 16 13 O -0.34 -9.80 10.03 -55.93 -0.56 -10.36 16 14 C 0.52 13.72 7.95 70.44 0.56 14.28 16 15 O -0.51 -14.58 16.10 20.06 0.32 -14.26 16 16 C 0.07 1.56 6.75 41.91 0.28 1.84 16 17 C -0.08 -0.98 9.63 22.65 0.22 -0.76 16 18 C -0.06 -0.32 10.16 22.42 0.23 -0.09 16 19 C -0.08 -0.78 9.74 22.64 0.22 -0.56 16 20 C 0.18 3.23 6.76 42.13 0.28 3.51 16 21 C 0.21 4.00 8.03 137.37 1.10 5.11 16 22 N -0.27 -4.73 12.21 -52.18 -0.64 -5.36 16 23 N -0.05 -0.74 13.47 37.02 0.50 -0.25 16 24 N -0.20 -2.51 7.90 37.02 0.29 -2.22 16 25 H 0.50 1.63 8.96 -347.54 -3.12 -1.49 16 26 N -0.28 -5.49 12.38 -52.13 -0.65 -6.13 16 27 N -0.44 -10.12 10.04 -174.05 -1.75 -11.87 16 28 H 0.28 15.75 8.31 -92.70 -0.77 14.98 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 30 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.17 1.57 7.63 -2.91 -0.02 1.55 16 36 H 0.21 -0.78 8.06 -2.91 -0.02 -0.81 16 37 H 0.18 0.81 7.87 -2.91 -0.02 0.78 16 Total: -1.00 -79.73 353.21 1.64 -78.09 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -2.01 Total: 0.76 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 5.02 Total: -6.65 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.94 Total: -82.43 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.24 Total: -24.61 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.07 kcal Atomic # 16 Polarization: -10.13 SS G_CDS: -1.10 Total: -11.23 kcal Total: -79.73 1.64 -78.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606351034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.726 kcal (2) G-P(sol) polarization free energy of solvation -79.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds