Wall clock time and date at job start Tue Mar 31 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35812 * 126.22309 * 2 1 4 4 N 1.40629 * 126.08458 * 0.02562 * 3 2 1 5 5 C 1.34775 * 119.99495 * 179.97438 * 4 3 2 6 6 O 1.21792 * 120.00562 * 0.02562 * 5 4 3 7 7 C 1.46203 * 119.99721 * 180.02562 * 5 4 3 8 8 S 1.75665 * 125.22874 * 0.02562 * 7 5 4 9 9 C 1.75476 * 92.09375 * 179.97438 * 8 7 5 10 10 C 1.32740 * 111.37129 * 0.02562 * 9 8 7 11 11 C 1.39575 * 125.23071 * 179.72461 * 7 5 4 12 12 C 1.40508 * 123.72060 * 359.95788 * 11 7 5 13 13 H 1.08006 * 119.99781 * 23.45295 * 12 11 7 14 14 C 1.40301 * 120.00335 * 203.44802 * 12 11 7 15 15 N 1.30643 * 119.99698 * 9.79964 * 14 12 11 16 16 Si 1.86803 * 120.00250 * 189.79840 * 14 12 11 17 17 H 1.48497 * 109.47079 * 60.00003 * 16 14 12 18 18 H 1.48498 * 109.47024 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46803 * 300.00299 * 16 14 12 20 20 C 1.40286 * 107.82911 * 179.97438 * 3 2 1 21 21 N 1.30828 * 108.33362 * 359.74266 * 20 3 2 22 22 N 1.35826 * 126.22867 * 179.97438 * 2 1 3 23 23 C 1.46505 * 126.04707 * 0.02562 * 22 2 1 24 24 C 1.50693 * 109.47219 * 90.00065 * 23 22 2 25 25 O 1.20828 * 120.00319 * 0.02562 * 24 23 22 26 26 O 1.34228 * 120.00294 * 179.72663 * 24 23 22 27 27 H 1.08997 * 109.46700 * 270.03331 * 1 2 3 28 28 H 1.08993 * 109.47575 * 30.03749 * 1 2 3 29 29 H 1.09002 * 109.46926 * 150.03663 * 1 2 3 30 30 H 0.96991 * 119.99976 * 359.97438 * 4 3 2 31 31 H 1.08000 * 124.31401 * 179.97438 * 9 8 7 32 32 H 1.07994 * 122.78614 * 179.97438 * 10 9 8 33 33 H 0.97004 * 119.99691 * 180.02562 * 15 14 12 34 34 H 1.07997 * 125.83626 * 179.97438 * 20 3 2 35 35 H 1.09003 * 109.46874 * 330.00420 * 23 22 2 36 36 H 1.08999 * 109.47382 * 210.00402 * 23 22 2 37 37 H 0.96698 * 117.00286 * 180.28120 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3095 1.0956 0.0000 4 7 1.8822 2.4354 0.0005 5 6 2.7894 3.4320 0.0010 6 8 3.9794 3.1724 0.0005 7 6 2.3452 4.8249 0.0021 8 16 0.6702 5.3543 0.0035 9 6 1.1375 7.0457 0.0049 10 6 2.4578 7.1827 0.0038 11 6 3.1867 5.9385 0.0081 12 6 4.5893 5.8561 0.0148 13 1 5.0800 4.9685 -0.3566 14 6 5.3526 6.9269 0.5039 15 7 4.7676 7.9154 1.1263 16 14 7.2053 6.9392 0.2651 17 1 7.5175 6.9096 -1.1864 18 1 7.7739 8.1714 0.8682 19 1 7.7971 5.7468 0.9231 20 6 3.6407 0.6530 0.0006 21 7 3.6394 -0.6553 0.0065 22 7 2.3097 -1.0957 0.0005 23 6 1.8637 -2.4912 0.0006 24 6 1.7113 -2.9699 -1.4201 25 8 1.9511 -2.2224 -2.3386 26 8 1.3149 -4.2287 -1.6654 27 1 -0.3632 0.0006 1.0277 28 1 -0.3634 0.8896 -0.5144 29 1 -0.3633 -0.8903 -0.5133 30 1 0.9345 2.6421 0.0005 31 1 0.4398 7.8701 0.0057 32 1 2.9457 8.1462 0.0040 33 1 5.2953 8.6560 1.4641 34 1 4.5170 1.2842 0.0004 35 1 0.9051 -2.5662 0.5140 36 1 2.6006 -3.1081 0.5148 37 1 1.2356 -4.4912 -2.5926 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607551427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:15 Heat of formation + Delta-G solvation = -45.081035 kcal Electronic energy + Delta-G solvation = -25544.630155 eV Core-core repulsion = 21607.308243 eV Total energy + Delta-G solvation = -3937.321912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52674 -41.16803 -39.98538 -37.88939 -37.21556 -35.58503 -34.92213 -34.45808 -32.40868 -30.87115 -28.95525 -28.23086 -27.18726 -24.27193 -23.62417 -22.77283 -21.22917 -21.02261 -20.58964 -19.31450 -19.04751 -18.20739 -17.77735 -17.47507 -17.22546 -17.00734 -16.27013 -16.13986 -16.04798 -15.40563 -15.19993 -15.00246 -14.22884 -14.16672 -14.09331 -13.80230 -13.74818 -13.62452 -13.56799 -13.19899 -13.10113 -12.92191 -12.76930 -12.64666 -12.07057 -12.03854 -12.01632 -11.81800 -11.55909 -11.42226 -11.06680 -10.33403 -10.29175 -9.41769 -8.95193 -8.88441 -8.55607 -6.45484 0.26175 0.59999 1.04787 1.23000 1.34517 1.36958 1.38060 1.45973 1.64626 1.77128 2.04053 2.13214 2.17087 2.50528 2.65085 3.32701 3.57417 3.67668 3.98335 4.11734 4.20042 4.29641 4.36413 4.46758 4.69003 4.85299 4.93135 4.96140 4.99930 5.23026 5.32123 5.39272 5.50116 5.57658 5.81371 5.87042 6.04720 6.38715 6.50769 6.59665 6.71412 6.86573 6.93820 7.68705 8.05913 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.003114 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.010789 B = 8989.319084 C =10350.994603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.054 3.946 3 C -0.003 4.003 4 N -0.647 5.647 5 C 0.590 3.410 6 O -0.585 6.585 7 C -0.465 4.465 8 S 0.010 5.990 9 C -0.188 4.188 10 C -0.130 4.130 11 C 0.115 3.885 12 C -0.413 4.413 13 H 0.086 0.914 14 C 0.037 3.963 15 N -0.789 5.789 16 Si 0.988 3.012 17 H -0.258 1.258 18 H -0.250 1.250 19 H -0.270 1.270 20 C 0.036 3.964 21 N -0.303 5.303 22 N -0.366 5.366 23 C 0.143 3.857 24 C 0.467 3.533 25 O -0.548 6.548 26 O -0.499 6.499 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.409 0.591 31 H 0.178 0.822 32 H 0.142 0.858 33 H 0.302 0.698 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.161 0.839 37 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 -14.997 0.060 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C -0.108 4.108 4 N -0.292 5.292 5 C 0.388 3.612 6 O -0.470 6.470 7 C -0.584 4.584 8 S 0.266 5.734 9 C -0.322 4.322 10 C -0.162 4.162 11 C 0.104 3.896 12 C -0.443 4.443 13 H 0.104 0.896 14 C -0.183 4.183 15 N -0.413 5.413 16 Si 0.807 3.193 17 H -0.182 1.182 18 H -0.173 1.173 19 H -0.195 1.195 20 C -0.150 4.150 21 N -0.124 5.124 22 N -0.153 5.153 23 C 0.021 3.979 24 C 0.308 3.692 25 O -0.438 6.438 26 O -0.313 6.313 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.246 0.754 31 H 0.195 0.805 32 H 0.159 0.841 33 H 0.113 0.887 34 H 0.198 0.802 35 H 0.199 0.801 36 H 0.178 0.822 37 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -10.688 -16.501 0.342 19.663 hybrid contribution 1.500 1.766 -0.874 2.476 sum -9.189 -14.735 -0.531 17.373 Atomic orbital electron populations 1.20564 0.83547 1.04913 1.05215 1.20929 0.95731 0.85108 1.05622 1.17744 0.93080 0.85106 1.14833 1.42557 1.09600 1.01808 1.75188 1.17049 0.84663 0.83987 0.75519 1.90512 1.17878 1.83919 1.54669 1.22834 0.95509 0.94188 1.45881 1.82249 1.06922 1.00336 1.83934 1.25444 0.98929 0.99494 1.08328 1.21611 0.93102 0.99179 1.02294 1.18350 0.93974 0.89835 0.87457 1.20049 0.91708 1.01552 1.31002 0.89555 1.27023 1.06764 0.92952 0.91595 1.69642 1.41110 1.07541 1.23033 0.85158 0.74774 0.79181 0.80157 1.18208 1.17339 1.19454 1.24303 0.98445 0.91520 1.00779 1.77226 0.98114 1.12003 1.25085 1.47879 1.03076 1.05149 1.59220 1.21381 1.07653 0.77837 0.90980 1.24028 0.72084 0.80002 0.93041 1.90839 1.47425 1.57457 1.48077 1.84438 1.79294 1.29033 1.38495 0.87304 0.89909 0.88902 0.75422 0.80470 0.84070 0.88670 0.80161 0.80062 0.82188 0.70592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 9.73 71.24 0.69 -0.78 16 2 C 0.05 1.58 6.98 41.38 0.29 1.87 16 3 C 0.00 -0.14 6.86 37.66 0.26 0.12 16 4 N -0.65 -26.71 5.46 -307.99 -1.68 -28.39 16 5 C 0.59 30.10 7.73 86.31 0.67 30.77 16 6 O -0.58 -33.25 11.59 -4.64 -0.05 -33.31 16 7 C -0.47 -23.77 6.51 24.66 0.16 -23.61 16 8 S 0.01 0.41 22.25 -56.49 -1.26 -0.84 16 9 C -0.19 -7.66 11.06 66.65 0.74 -6.92 16 10 C -0.13 -6.23 9.04 22.61 0.20 -6.02 16 11 C 0.12 6.25 5.68 -20.89 -0.12 6.14 16 12 C -0.41 -23.08 8.52 23.33 0.20 -22.88 16 13 H 0.09 5.16 6.03 -2.91 -0.02 5.15 16 14 C 0.04 1.84 5.39 85.37 0.46 2.30 16 15 N -0.79 -38.00 10.82 21.89 0.24 -37.77 16 16 Si 0.99 38.61 29.57 68.60 2.03 40.64 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 C 0.04 1.57 10.83 85.34 0.92 2.50 16 21 N -0.30 -11.34 12.56 -56.75 -0.71 -12.05 16 22 N -0.37 -10.23 3.13 -337.35 -1.05 -11.29 16 23 C 0.14 2.15 6.68 85.63 0.57 2.72 16 24 C 0.47 8.50 8.40 71.23 0.60 9.09 16 25 O -0.55 -16.40 17.19 21.96 0.38 -16.02 16 26 O -0.50 -4.99 13.42 -51.40 -0.69 -5.68 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.51 7.61 -2.39 -0.02 1.49 16 29 H 0.09 1.14 7.76 -2.39 -0.02 1.12 16 30 H 0.41 14.46 7.16 -92.71 -0.66 13.79 16 31 H 0.18 5.70 8.06 -2.91 -0.02 5.68 16 32 H 0.14 6.78 6.41 -2.91 -0.02 6.76 16 33 H 0.30 12.80 8.29 -92.71 -0.77 12.03 16 34 H 0.18 8.76 5.91 -2.91 -0.02 8.74 16 35 H 0.18 0.95 7.69 -2.39 -0.02 0.93 16 36 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.43 1.38 9.10 -74.06 -0.67 0.70 16 Total: -1.00 -80.13 341.03 2.68 -77.45 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.16 Total: 31.96 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 5.65 Total: -4.70 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -3.21 Total: -89.50 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -0.37 Total: -55.00 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.26 Total: -0.84 kcal Total: -80.13 2.68 -77.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607551427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.368 kcal (2) G-P(sol) polarization free energy of solvation -80.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds