Wall clock time and date at job start Tue Mar 31 2020 19:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99683 * 2 1 4 4 H 1.48503 * 109.47042 * 265.11579 * 3 2 1 5 5 H 1.48496 * 109.47501 * 25.12045 * 3 2 1 6 6 H 1.48503 * 109.47200 * 145.12051 * 3 2 1 7 7 C 1.38810 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99737 * 204.72238 * 7 2 1 9 9 N 1.36938 * 120.00488 * 24.72028 * 7 2 1 10 10 C 1.46503 * 119.99550 * 9.79379 * 9 7 2 11 11 C 1.50700 * 109.47309 * 269.14152 * 10 9 7 12 12 O 1.20828 * 120.00046 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00362 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00541 * 189.79450 * 9 7 2 15 15 C 1.50704 * 109.47038 * 89.99486 * 14 9 7 16 16 C 1.39914 * 125.87285 * 94.71998 * 15 14 9 17 17 C 1.35327 * 107.93232 * 179.82695 * 16 15 14 18 18 N 1.35216 * 107.70945 * 0.42857 * 17 16 15 19 19 C 1.40218 * 126.05203 * 179.70378 * 18 17 16 20 20 C 1.38826 * 120.05530 * 359.73411 * 19 18 17 21 21 C 1.38108 * 119.94560 * 179.74287 * 20 19 18 22 22 C 1.38382 * 120.05501 * 0.52474 * 21 20 19 23 23 Cl 1.73603 * 119.94593 * 179.74558 * 22 21 20 24 24 C 1.38393 * 120.10665 * 359.72442 * 22 21 20 25 25 C 1.38104 * 120.05216 * 0.02562 * 24 22 21 26 26 N 1.30876 * 125.88410 * 275.02406 * 15 14 9 27 27 H 0.96997 * 120.00462 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47471 * 29.14360 * 10 9 7 29 29 H 1.08997 * 109.46992 * 149.14444 * 10 9 7 30 30 H 0.96695 * 117.00063 * 179.97438 * 13 11 10 31 31 H 1.09006 * 109.46873 * 330.00199 * 14 9 7 32 32 H 1.08996 * 109.47723 * 210.00039 * 14 9 7 33 33 H 1.08005 * 126.03605 * 359.96641 * 16 15 14 34 34 H 1.08000 * 126.14876 * 180.14346 * 17 16 15 35 35 H 1.08002 * 120.02468 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.96913 * 180.25092 * 21 20 19 37 37 H 1.07997 * 119.97047 * 180.02562 * 24 22 21 38 38 H 1.07998 * 120.02852 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6008 1.9868 -1.3950 5 1 1.3998 2.6802 0.5943 6 1 3.4923 1.4722 0.8006 7 6 2.0103 -1.2021 -0.0005 8 1 3.0161 -1.2451 0.3906 9 7 1.4198 -2.3335 -0.4970 10 6 0.1489 -2.2396 -1.2197 11 6 -0.9935 -2.3955 -0.2493 12 8 -0.7692 -2.5678 0.9254 13 8 -2.2603 -2.3439 -0.6901 14 6 2.0589 -3.6378 -0.3054 15 6 1.5713 -4.2519 0.9816 16 6 0.5125 -5.1578 1.1083 17 6 0.3902 -5.4751 2.4181 18 7 1.3336 -4.7854 3.0983 19 6 1.5454 -4.8238 4.4838 20 6 0.7421 -5.6206 5.2882 21 6 0.9562 -5.6608 6.6520 22 6 1.9634 -4.8993 7.2182 23 17 2.2257 -4.9469 8.9337 24 6 2.7623 -4.1002 6.4191 25 6 2.5554 -4.0607 5.0542 26 7 2.0616 -4.0254 2.1737 27 1 -0.4851 0.8400 0.0004 28 1 0.0801 -1.2681 -1.7090 29 1 0.0985 -3.0287 -1.9699 30 1 -2.9593 -2.4494 -0.0303 31 1 3.1404 -3.5092 -0.2597 32 1 1.8057 -4.2925 -1.1392 33 1 -0.0978 -5.5385 0.3026 34 1 -0.3341 -6.1535 2.8443 35 1 -0.0472 -6.2114 4.8474 36 1 0.3340 -6.2836 7.2777 37 1 3.5480 -3.5072 6.8632 38 1 3.1793 -3.4373 4.4309 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:51 Heat of formation + Delta-G solvation = 47.970769 kcal Electronic energy + Delta-G solvation = -26309.008672 eV Core-core repulsion = 22373.678082 eV Total energy + Delta-G solvation = -3935.330590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.01596 -39.07562 -38.57531 -36.59726 -35.84607 -34.31846 -33.20819 -31.40733 -31.36698 -29.68943 -28.87691 -27.46627 -26.04766 -23.28328 -23.03550 -22.00998 -20.46492 -20.07013 -19.05536 -18.12778 -16.87451 -16.62589 -16.49206 -15.41018 -15.35473 -15.09235 -14.78887 -14.68613 -14.07363 -13.81311 -13.62747 -13.52103 -13.39509 -13.21716 -13.09597 -12.40432 -12.20976 -11.74773 -11.63503 -11.60443 -11.45077 -11.06444 -10.99085 -10.86110 -10.64750 -10.22144 -10.09260 -9.97966 -9.86189 -9.52029 -9.23305 -9.13353 -8.59112 -8.52126 -7.63940 -7.22000 -5.98010 -3.24817 0.80357 1.13659 2.01369 2.48749 2.82027 3.33766 3.39132 3.43315 3.47710 3.66459 3.99142 4.35839 4.53476 4.59097 4.68389 4.96227 4.98905 5.16975 5.24440 5.35266 5.42698 5.48115 5.78076 5.80879 5.92533 6.06503 6.11602 6.14478 6.29660 6.31379 6.45108 6.52843 6.65079 6.93886 7.02787 7.23743 7.55974 7.69688 7.93104 8.08217 8.32572 8.96923 9.49396 9.66550 10.03931 11.13134 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.003425 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.646679 B = 8174.116502 C = 9179.050758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.085 0.915 9 N -0.552 5.552 10 C 0.187 3.813 11 C 0.474 3.526 12 O -0.502 6.502 13 O -0.547 6.547 14 C 0.210 3.790 15 C 0.098 3.902 16 C -0.228 4.228 17 C 0.036 3.964 18 N -0.338 5.338 19 C 0.197 3.803 20 C -0.145 4.145 21 C -0.081 4.081 22 C -0.062 4.062 23 Cl -0.077 7.077 24 C -0.082 4.082 25 C -0.115 4.115 26 N -0.273 5.273 27 H 0.258 0.742 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.377 0.623 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -12.641 6.580 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.103 0.897 9 N -0.270 5.270 10 C 0.058 3.942 11 C 0.313 3.687 12 O -0.387 6.387 13 O -0.358 6.358 14 C 0.081 3.919 15 C -0.074 4.074 16 C -0.256 4.256 17 C -0.103 4.103 18 N -0.113 5.113 19 C 0.102 3.898 20 C -0.166 4.166 21 C -0.100 4.100 22 C -0.090 4.090 23 Cl -0.048 7.048 24 C -0.101 4.101 25 C -0.135 4.135 26 N -0.091 5.091 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.233 0.767 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.596 -11.867 7.461 14.108 hybrid contribution -1.271 0.560 0.672 1.543 sum 0.325 -11.307 8.133 13.932 Atomic orbital electron populations 1.69845 1.05300 1.25957 1.53559 1.24795 0.95211 0.98626 1.00991 0.86134 0.79025 0.82874 0.77799 1.21167 1.21997 1.20478 1.19381 0.96765 0.84549 1.36857 0.89706 1.44566 1.19718 1.01575 1.61170 1.20499 0.80874 1.02486 0.90388 1.25135 0.82084 0.70471 0.91029 1.90558 1.84207 1.44935 1.18978 1.84632 1.18373 1.86777 1.45970 1.19711 0.97692 0.86364 0.88172 1.23986 0.94526 0.92949 0.95923 1.21314 1.03312 1.05332 0.95658 1.22239 0.95519 0.99721 0.92867 1.45883 1.26777 1.34677 1.03972 1.17648 0.95684 0.96371 0.80139 1.20701 1.01154 1.01866 0.92904 1.20742 0.96715 0.98562 0.94011 1.20817 1.00483 1.02927 0.84731 1.98354 1.96207 1.97857 1.12378 1.20923 0.98957 0.97761 0.92450 1.20913 0.98300 0.99948 0.94374 1.77470 1.18811 1.14996 0.97855 0.93211 0.86761 0.92825 0.76742 0.90945 0.91337 0.84367 0.81920 0.84659 0.84428 0.84343 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 9.01 55.49 0.50 -24.61 16 2 C 0.00 0.05 4.88 -17.43 -0.09 -0.04 16 3 Si 0.91 21.46 29.62 -169.99 -5.03 16.42 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.45 9.70 -15.06 -0.15 -6.60 16 8 H 0.09 2.23 7.93 -52.49 -0.42 1.81 16 9 N -0.55 -12.80 2.08 -175.98 -0.37 -13.17 16 10 C 0.19 4.13 5.58 -5.19 -0.03 4.10 16 11 C 0.47 11.00 6.41 36.01 0.23 11.23 16 12 O -0.50 -13.24 14.32 -18.75 -0.27 -13.51 16 13 O -0.55 -10.98 13.42 -39.26 -0.53 -11.51 16 14 C 0.21 4.09 6.27 -5.19 -0.03 4.06 16 15 C 0.10 2.01 5.59 -82.37 -0.46 1.55 16 16 C -0.23 -4.10 9.50 -39.99 -0.38 -4.48 16 17 C 0.04 0.60 10.80 -17.10 -0.18 0.42 16 18 N -0.34 -6.32 3.80 -10.69 -0.04 -6.36 16 19 C 0.20 3.18 6.69 -83.58 -0.56 2.62 16 20 C -0.14 -1.86 9.45 -39.41 -0.37 -2.23 16 21 C -0.08 -0.92 9.82 -39.58 -0.39 -1.31 16 22 C -0.06 -0.75 6.32 -39.47 -0.25 -1.00 16 23 Cl -0.08 -0.83 28.95 -51.86 -1.50 -2.33 16 24 C -0.08 -1.05 9.82 -39.57 -0.39 -1.44 16 25 C -0.11 -1.78 9.66 -39.41 -0.38 -2.16 16 26 N -0.27 -5.88 11.87 33.69 0.40 -5.48 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.11 2.76 6.32 -51.93 -0.33 2.43 16 29 H 0.05 0.98 7.90 -51.93 -0.41 0.57 16 30 H 0.38 6.20 9.10 45.56 0.41 6.62 16 31 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 32 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 33 H 0.14 2.19 8.06 -52.48 -0.42 1.76 16 34 H 0.16 2.04 7.04 -52.49 -0.37 1.67 16 35 H 0.14 1.43 6.74 -52.49 -0.35 1.08 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.15 2.47 7.70 -52.49 -0.40 2.06 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -33.18 346.03 -8.15 -41.33 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.10 Total: 9.27 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.43 Total: 4.73 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.49 Total: -49.62 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.80 Total: -25.02 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.18 -8.15 -41.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.304 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds