Wall clock time and date at job start Tue Mar 31 2020 19:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99683 * 2 1 4 4 H 1.48503 * 109.47042 * 265.11579 * 3 2 1 5 5 H 1.48496 * 109.47501 * 25.12045 * 3 2 1 6 6 H 1.48503 * 109.47200 * 145.12051 * 3 2 1 7 7 C 1.38810 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99737 * 204.72238 * 7 2 1 9 9 N 1.36938 * 120.00488 * 24.72028 * 7 2 1 10 10 C 1.46503 * 119.99550 * 9.79379 * 9 7 2 11 11 C 1.50700 * 109.47309 * 269.14152 * 10 9 7 12 12 O 1.20828 * 120.00046 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00362 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00541 * 189.79450 * 9 7 2 15 15 C 1.50704 * 109.47038 * 89.99486 * 14 9 7 16 16 C 1.39914 * 125.87285 * 94.71998 * 15 14 9 17 17 C 1.35327 * 107.93232 * 179.82695 * 16 15 14 18 18 N 1.35216 * 107.70945 * 0.42857 * 17 16 15 19 19 C 1.40218 * 126.05203 * 179.70378 * 18 17 16 20 20 C 1.38826 * 120.05530 * 359.73411 * 19 18 17 21 21 C 1.38108 * 119.94560 * 179.74287 * 20 19 18 22 22 C 1.38382 * 120.05501 * 0.52474 * 21 20 19 23 23 Cl 1.73603 * 119.94593 * 179.74558 * 22 21 20 24 24 C 1.38393 * 120.10665 * 359.72442 * 22 21 20 25 25 C 1.38104 * 120.05216 * 0.02562 * 24 22 21 26 26 N 1.30876 * 125.88410 * 275.02406 * 15 14 9 27 27 H 0.96997 * 120.00462 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47471 * 29.14360 * 10 9 7 29 29 H 1.08997 * 109.46992 * 149.14444 * 10 9 7 30 30 H 0.96695 * 117.00063 * 179.97438 * 13 11 10 31 31 H 1.09006 * 109.46873 * 330.00199 * 14 9 7 32 32 H 1.08996 * 109.47723 * 210.00039 * 14 9 7 33 33 H 1.08005 * 126.03605 * 359.96641 * 16 15 14 34 34 H 1.08000 * 126.14876 * 180.14346 * 17 16 15 35 35 H 1.08002 * 120.02468 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.96913 * 180.25092 * 21 20 19 37 37 H 1.07997 * 119.97047 * 180.02562 * 24 22 21 38 38 H 1.07998 * 120.02852 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6008 1.9868 -1.3950 5 1 1.3998 2.6802 0.5943 6 1 3.4923 1.4722 0.8006 7 6 2.0103 -1.2021 -0.0005 8 1 3.0161 -1.2451 0.3906 9 7 1.4198 -2.3335 -0.4970 10 6 0.1489 -2.2396 -1.2197 11 6 -0.9935 -2.3955 -0.2493 12 8 -0.7692 -2.5678 0.9254 13 8 -2.2603 -2.3439 -0.6901 14 6 2.0589 -3.6378 -0.3054 15 6 1.5713 -4.2519 0.9816 16 6 0.5125 -5.1578 1.1083 17 6 0.3902 -5.4751 2.4181 18 7 1.3336 -4.7854 3.0983 19 6 1.5454 -4.8238 4.4838 20 6 0.7421 -5.6206 5.2882 21 6 0.9562 -5.6608 6.6520 22 6 1.9634 -4.8993 7.2182 23 17 2.2257 -4.9469 8.9337 24 6 2.7623 -4.1002 6.4191 25 6 2.5554 -4.0607 5.0542 26 7 2.0616 -4.0254 2.1737 27 1 -0.4851 0.8400 0.0004 28 1 0.0801 -1.2681 -1.7090 29 1 0.0985 -3.0287 -1.9699 30 1 -2.9593 -2.4494 -0.0303 31 1 3.1404 -3.5092 -0.2597 32 1 1.8057 -4.2925 -1.1392 33 1 -0.0978 -5.5385 0.3026 34 1 -0.3341 -6.1535 2.8443 35 1 -0.0472 -6.2114 4.8474 36 1 0.3340 -6.2836 7.2777 37 1 3.5480 -3.5072 6.8632 38 1 3.1793 -3.4373 4.4309 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:50 Heat of formation + Delta-G solvation = 28.231882 kcal Electronic energy + Delta-G solvation = -26309.864615 eV Core-core repulsion = 22373.678082 eV Total energy + Delta-G solvation = -3936.186532 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.32893 -40.41900 -40.07811 -37.68153 -37.41132 -36.08475 -34.58946 -33.15803 -32.41784 -31.05250 -30.23294 -29.11585 -27.70296 -24.65052 -24.33612 -23.38666 -21.95974 -21.52719 -20.50428 -19.30437 -18.71697 -18.30073 -17.63391 -17.15992 -16.87791 -16.35613 -16.09267 -15.95511 -15.86743 -15.35117 -15.14785 -14.79073 -14.66223 -14.47118 -14.34877 -13.82481 -13.50165 -13.29262 -13.18938 -12.94056 -12.71106 -12.62844 -12.53177 -12.34119 -12.08139 -11.98034 -11.85963 -11.73684 -11.33794 -10.99234 -10.79259 -10.47990 -10.24538 -9.89033 -9.11878 -8.84058 -7.97832 -5.24165 -0.30283 0.12094 1.04821 1.24110 1.46975 1.48389 1.55588 1.60023 1.99358 2.21276 2.52327 2.57444 2.89056 3.24807 3.47233 3.70085 3.71107 3.84907 3.91966 4.09502 4.24897 4.35039 4.49711 4.67699 4.75926 4.80643 4.83538 4.89379 4.99199 5.05883 5.09377 5.22540 5.30627 5.36580 5.48027 5.65376 5.85818 6.18774 6.28869 6.34320 6.90912 7.04350 7.67354 7.88697 8.12714 9.10862 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013409 B = 0.003425 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.646679 B = 8174.116502 C = 9179.050758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.046 4.046 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.305 1.305 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.564 5.564 10 C 0.185 3.815 11 C 0.478 3.522 12 O -0.537 6.537 13 O -0.540 6.540 14 C 0.207 3.793 15 C 0.083 3.917 16 C -0.245 4.245 17 C 0.042 3.958 18 N -0.343 5.343 19 C 0.159 3.841 20 C -0.134 4.134 21 C -0.072 4.072 22 C -0.060 4.060 23 Cl -0.060 7.060 24 C -0.082 4.082 25 C -0.135 4.135 26 N -0.322 5.322 27 H 0.248 0.752 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.395 0.605 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.207 0.793 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -14.643 7.628 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.232 1.232 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.283 5.283 10 C 0.056 3.944 11 C 0.319 3.681 12 O -0.425 6.425 13 O -0.351 6.351 14 C 0.079 3.921 15 C -0.088 4.088 16 C -0.273 4.273 17 C -0.098 4.098 18 N -0.118 5.118 19 C 0.065 3.935 20 C -0.155 4.155 21 C -0.091 4.091 22 C -0.087 4.087 23 Cl -0.031 7.031 24 C -0.101 4.101 25 C -0.156 4.156 26 N -0.142 5.142 27 H 0.057 0.943 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.253 0.747 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.175 0.825 34 H 0.224 0.776 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.171 0.829 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.567 -13.890 8.505 16.297 hybrid contribution -0.937 1.048 0.530 1.502 sum -0.370 -12.842 9.035 15.707 Atomic orbital electron populations 1.69990 1.06097 1.25497 1.55573 1.25358 0.95869 1.00875 1.01950 0.85311 0.77568 0.79709 0.77973 1.20040 1.23217 1.20670 1.19468 0.96473 0.86087 1.35611 0.90948 1.44540 1.20266 1.02193 1.61281 1.20509 0.80341 1.02770 0.90731 1.25238 0.82941 0.69418 0.90536 1.90547 1.84893 1.46668 1.20361 1.84563 1.18001 1.86200 1.46345 1.19877 0.97190 0.85537 0.89527 1.24010 0.95412 0.93853 0.95553 1.21560 1.03308 1.05521 0.96951 1.22940 0.95113 0.99145 0.92578 1.46006 1.26784 1.34378 1.04673 1.18087 0.97359 0.98434 0.79572 1.21016 1.00680 1.00712 0.93128 1.21141 0.96257 0.97937 0.93720 1.20981 1.00055 1.02137 0.85562 1.98366 1.96136 1.97742 1.10837 1.21039 0.99538 0.98071 0.91477 1.20839 0.98793 1.00605 0.95365 1.77351 1.21025 1.16767 0.99038 0.94262 0.89030 0.88617 0.74740 0.91401 0.87590 0.82458 0.77649 0.81981 0.80986 0.82916 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.53 9.01 21.65 0.20 -52.33 16 2 C -0.05 -2.49 4.88 84.86 0.41 -2.08 16 3 Si 0.96 45.24 29.62 68.60 2.03 47.27 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.25 -13.19 9.70 84.03 0.81 -12.38 16 8 H 0.07 3.96 7.93 -2.91 -0.02 3.93 16 9 N -0.56 -26.27 2.08 -710.69 -1.48 -27.75 16 10 C 0.19 8.09 5.58 85.63 0.48 8.57 16 11 C 0.48 21.89 6.41 71.24 0.46 22.34 16 12 O -0.54 -28.30 14.32 21.96 0.31 -27.99 16 13 O -0.54 -20.91 13.42 -51.43 -0.69 -21.60 16 14 C 0.21 8.03 6.27 85.63 0.54 8.57 16 15 C 0.08 3.37 5.59 43.11 0.24 3.61 16 16 C -0.25 -8.51 9.50 22.00 0.21 -8.30 16 17 C 0.04 1.34 10.80 83.50 0.90 2.25 16 18 N -0.34 -12.76 3.80 -187.74 -0.71 -13.48 16 19 C 0.16 5.07 6.69 38.08 0.25 5.33 16 20 C -0.13 -3.09 9.45 22.38 0.21 -2.88 16 21 C -0.07 -1.38 9.82 22.27 0.22 -1.17 16 22 C -0.06 -1.31 6.32 22.34 0.14 -1.17 16 23 Cl -0.06 -1.13 28.95 -2.72 -0.08 -1.20 16 24 C -0.08 -2.06 9.82 22.27 0.22 -1.84 16 25 C -0.14 -4.32 9.66 22.38 0.22 -4.10 16 26 N -0.32 -14.27 11.87 -47.34 -0.56 -14.84 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.09 4.45 6.32 -2.39 -0.02 4.44 16 29 H 0.10 3.29 7.90 -2.39 -0.02 3.27 16 30 H 0.40 12.36 9.10 -74.06 -0.67 11.69 16 31 H 0.07 2.62 8.03 -2.38 -0.02 2.60 16 32 H 0.11 3.21 7.90 -2.39 -0.02 3.19 16 33 H 0.16 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.21 4.39 7.04 -2.91 -0.02 4.37 16 35 H 0.16 2.76 6.74 -2.91 -0.02 2.74 16 36 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 38 H 0.12 4.42 7.70 -2.91 -0.02 4.40 16 Total: -1.00 -74.01 346.03 4.78 -69.23 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.45 Total: 25.93 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 5.31 Total: 16.76 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -2.56 Total: -108.39 kcal Atomic # 8 Polarization: -49.21 SS G_CDS: -0.38 Total: -49.59 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -74.01 4.78 -69.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.465 kcal (2) G-P(sol) polarization free energy of solvation -74.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds