Wall clock time and date at job start Tue Mar 31 2020 18:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00455 * 2 1 4 4 H 1.48504 * 109.46773 * 270.00173 * 3 2 1 5 5 H 1.48503 * 109.46968 * 29.99759 * 3 2 1 6 6 H 1.48491 * 109.47496 * 149.99784 * 3 2 1 7 7 C 1.38809 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99433 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99650 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46731 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00328 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99661 * 180.02562 * 11 10 9 14 14 C 1.39908 * 119.99752 * 184.57759 * 13 11 10 15 15 C 1.39603 * 119.78129 * 144.83666 * 14 13 11 16 16 C 1.36245 * 120.62028 * 179.97438 * 15 14 13 17 17 C 1.40149 * 119.93297 * 359.97438 * 16 15 14 18 18 C 1.41624 * 133.48341 * 179.97438 * 17 16 15 19 19 N 1.30123 * 108.66932 * 179.71589 * 18 17 16 20 20 N 1.40015 * 109.78733 * 0.46151 * 19 18 17 21 21 C 1.46500 * 125.95215 * 179.80236 * 20 19 18 22 22 C 1.50701 * 109.47247 * 269.68978 * 21 20 19 23 23 O 1.20825 * 119.99598 * 359.97438 * 22 21 20 24 24 O 1.34228 * 119.99884 * 180.02562 * 22 21 20 25 25 C 1.37171 * 108.09600 * 359.53293 * 20 19 18 26 26 C 1.38236 * 119.77800 * 324.84986 * 14 13 11 27 27 H 0.97005 * 119.99585 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47286 * 60.00021 * 10 9 7 29 29 H 1.09001 * 109.47164 * 299.99899 * 10 9 7 30 30 H 0.96998 * 120.00463 * 4.56929 * 13 11 10 31 31 H 1.07999 * 119.68743 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.03792 * 179.97438 * 16 15 14 33 33 H 1.07996 * 125.66969 * 0.03362 * 18 17 16 34 34 H 1.09000 * 109.47227 * 29.68725 * 21 20 19 35 35 H 1.09002 * 109.47092 * 149.68664 * 21 20 19 36 36 H 0.96704 * 116.99324 * 179.97438 * 24 22 21 37 37 H 1.08002 * 120.16367 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 2.3561 -7.6509 -0.0970 15 6 3.0843 -8.6119 -0.8006 16 6 2.6257 -9.8906 -0.9057 17 6 1.4124 -10.2501 -0.3033 18 6 0.6816 -11.4610 -0.2305 19 7 -0.3979 -11.2548 0.4663 20 7 -0.4480 -9.9175 0.8781 21 6 -1.5110 -9.3029 1.6771 22 6 -2.5694 -8.7449 0.7608 23 8 -2.4479 -8.8496 -0.4368 24 8 -3.6465 -8.1308 1.2751 25 6 0.6747 -9.2847 0.4084 26 6 1.1563 -7.9827 0.5041 27 1 -0.4850 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8905 29 1 3.1243 -3.7315 -0.8895 30 1 3.7984 -6.1854 0.0679 31 1 4.0199 -8.3393 -1.2660 32 1 3.1964 -10.6264 -1.4527 33 1 0.9742 -12.4008 -0.6748 34 1 -1.9552 -10.0540 2.3303 35 1 -1.0923 -8.4979 2.2812 36 1 -4.2981 -7.7889 0.6477 37 1 0.5967 -7.2357 1.0475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186625.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:22 Heat of formation + Delta-G solvation = -22.336676 kcal Electronic energy + Delta-G solvation = -25187.403074 eV Core-core repulsion = 21251.067431 eV Total energy + Delta-G solvation = -3936.335643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71398 -40.27816 -39.82977 -37.19390 -36.29473 -34.34845 -33.66961 -32.49236 -30.81788 -30.15402 -28.21399 -27.74161 -25.55270 -23.53196 -22.83805 -22.04138 -20.58943 -20.45830 -18.43788 -18.25589 -17.66303 -17.31292 -16.89921 -16.46474 -16.17489 -15.80634 -15.18878 -14.86070 -14.73724 -14.62618 -14.43769 -14.17617 -13.68995 -13.43874 -13.29068 -12.93244 -12.78912 -12.58636 -12.41420 -11.89241 -11.68154 -11.47307 -11.11567 -11.08277 -11.02097 -10.96449 -10.82402 -10.27826 -10.05180 -9.89869 -9.52075 -9.12579 -8.34204 -8.22595 -7.97978 -6.58869 -6.28129 -3.99831 0.76151 1.35605 1.88364 1.98045 2.34877 2.80546 2.88264 2.95804 3.18568 3.22882 3.26771 3.53399 3.73610 4.13643 4.17830 4.42213 4.69454 4.74610 4.89257 4.92959 5.01231 5.03895 5.07517 5.21336 5.32433 5.44310 5.51939 5.74004 5.93263 6.00730 6.09132 6.18109 6.30171 6.31631 6.41621 6.65870 6.91770 7.41124 7.43943 7.53641 7.66725 8.28646 8.31740 9.17400 10.79280 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.002834 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.117573 B = 9876.282222 C =11451.619464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.494 6.494 13 N -0.678 5.678 14 C 0.205 3.795 15 C -0.176 4.176 16 C -0.023 4.023 17 C -0.196 4.196 18 C 0.084 3.916 19 N -0.255 5.255 20 N -0.397 5.397 21 C 0.157 3.843 22 C 0.458 3.542 23 O -0.493 6.493 24 O -0.513 6.513 25 C 0.156 3.844 26 C -0.151 4.151 27 H 0.269 0.731 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.413 0.587 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.194 0.806 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.417 0.583 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 -21.738 2.888 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.366 6.366 13 N -0.325 5.325 14 C 0.106 3.894 15 C -0.197 4.197 16 C -0.044 4.044 17 C -0.204 4.204 18 C -0.112 4.112 19 N -0.066 5.066 20 N -0.186 5.186 21 C 0.033 3.967 22 C 0.297 3.703 23 O -0.379 6.379 24 O -0.325 6.325 25 C 0.042 3.958 26 C -0.176 4.176 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.249 0.751 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.211 0.789 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.277 0.723 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.163 -22.508 3.397 22.793 hybrid contribution 2.559 2.098 -0.847 3.416 sum 3.723 -20.410 2.551 20.903 Atomic orbital electron populations 1.70013 1.05979 1.27569 1.46652 1.25002 0.95044 0.99093 0.94416 0.86148 0.79400 0.81443 0.78402 1.20226 1.20721 1.19644 1.22851 0.94927 0.91470 1.59256 0.90797 1.85429 1.04474 0.96406 1.96768 1.23547 1.07011 0.94424 1.05431 1.20597 0.86523 0.86345 0.74690 1.90714 1.15310 1.85085 1.45481 1.43703 1.11143 1.03613 1.74045 1.17433 0.93691 0.84127 0.94155 1.20448 1.02483 0.93287 1.03516 1.20103 0.92921 0.95582 0.95801 1.18880 0.99380 0.93916 1.08206 1.23895 0.91483 0.98446 0.97362 1.76658 1.20429 0.94467 1.15083 1.47652 1.16812 1.06242 1.47877 1.20771 0.85314 1.00202 0.90453 1.23752 0.82197 0.75499 0.88844 1.90798 1.76499 1.53718 1.16880 1.84456 1.32862 1.69306 1.45925 1.18574 0.87682 0.93931 0.95646 1.20078 0.98726 0.93254 1.05525 0.92108 0.88684 0.88678 0.75091 0.85093 0.84940 0.78939 0.84556 0.84674 0.72349 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 11 C 0.53 9.39 7.68 -10.99 -0.08 9.31 16 12 O -0.49 -10.66 13.28 5.55 0.07 -10.58 16 13 N -0.68 -8.83 5.33 -9.84 -0.05 -8.88 16 14 C 0.20 2.74 6.30 -83.66 -0.53 2.22 16 15 C -0.18 -1.85 9.87 -39.79 -0.39 -2.24 16 16 C -0.02 -0.22 10.05 -39.58 -0.40 -0.62 16 17 C -0.20 -2.38 6.17 -106.92 -0.66 -3.04 16 18 C 0.08 0.91 12.05 -16.98 -0.20 0.70 16 19 N -0.25 -3.29 12.44 30.88 0.38 -2.90 16 20 N -0.40 -5.28 3.16 -59.89 -0.19 -5.47 16 21 C 0.16 1.63 7.01 -5.19 -0.04 1.60 16 22 C 0.46 5.87 8.40 36.01 0.30 6.17 16 23 O -0.49 -8.55 17.19 -18.75 -0.32 -8.87 16 24 O -0.51 -5.13 13.42 -39.25 -0.53 -5.66 16 25 C 0.16 2.22 6.88 -84.17 -0.58 1.65 16 26 C -0.15 -2.28 8.66 -39.24 -0.34 -2.62 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 30 H 0.41 3.77 8.82 -40.82 -0.36 3.41 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.42 2.76 9.10 45.56 0.41 3.18 16 37 H 0.14 2.40 6.20 -52.49 -0.33 2.07 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -39.38 350.68 -7.12 -46.50 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -2.77 Total: 5.43 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.50 Total: -2.16 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.88 Total: -42.19 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.78 Total: -25.11 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -39.38 -7.12 -46.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186625.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.167 kcal (2) G-P(sol) polarization free energy of solvation -39.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds