Wall clock time and date at job start Tue Mar 31 2020 18:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 120.00455 * 2 1 4 4 H 1.48504 * 109.46773 * 270.00173 * 3 2 1 5 5 H 1.48503 * 109.46968 * 29.99759 * 3 2 1 6 6 H 1.48491 * 109.47496 * 149.99784 * 3 2 1 7 7 C 1.38809 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99433 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99650 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46731 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00328 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99661 * 180.02562 * 11 10 9 14 14 C 1.39908 * 119.99752 * 184.57759 * 13 11 10 15 15 C 1.39603 * 119.78129 * 144.83666 * 14 13 11 16 16 C 1.36245 * 120.62028 * 179.97438 * 15 14 13 17 17 C 1.40149 * 119.93297 * 359.97438 * 16 15 14 18 18 C 1.41624 * 133.48341 * 179.97438 * 17 16 15 19 19 N 1.30123 * 108.66932 * 179.71589 * 18 17 16 20 20 N 1.40015 * 109.78733 * 0.46151 * 19 18 17 21 21 C 1.46500 * 125.95215 * 179.80236 * 20 19 18 22 22 C 1.50701 * 109.47247 * 269.68978 * 21 20 19 23 23 O 1.20825 * 119.99598 * 359.97438 * 22 21 20 24 24 O 1.34228 * 119.99884 * 180.02562 * 22 21 20 25 25 C 1.37171 * 108.09600 * 359.53293 * 20 19 18 26 26 C 1.38236 * 119.77800 * 324.84986 * 14 13 11 27 27 H 0.97005 * 119.99585 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47286 * 60.00021 * 10 9 7 29 29 H 1.09001 * 109.47164 * 299.99899 * 10 9 7 30 30 H 0.96998 * 120.00463 * 4.56929 * 13 11 10 31 31 H 1.07999 * 119.68743 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.03792 * 179.97438 * 16 15 14 33 33 H 1.07996 * 125.66969 * 0.03362 * 18 17 16 34 34 H 1.09000 * 109.47227 * 29.68725 * 21 20 19 35 35 H 1.09002 * 109.47092 * 149.68664 * 21 20 19 36 36 H 0.96704 * 116.99324 * 179.97438 * 24 22 21 37 37 H 1.08002 * 120.16367 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 2.3561 -7.6509 -0.0970 15 6 3.0843 -8.6119 -0.8006 16 6 2.6257 -9.8906 -0.9057 17 6 1.4124 -10.2501 -0.3033 18 6 0.6816 -11.4610 -0.2305 19 7 -0.3979 -11.2548 0.4663 20 7 -0.4480 -9.9175 0.8781 21 6 -1.5110 -9.3029 1.6771 22 6 -2.5694 -8.7449 0.7608 23 8 -2.4479 -8.8496 -0.4368 24 8 -3.6465 -8.1308 1.2751 25 6 0.6747 -9.2847 0.4084 26 6 1.1563 -7.9827 0.5041 27 1 -0.4850 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8905 29 1 3.1243 -3.7315 -0.8895 30 1 3.7984 -6.1854 0.0679 31 1 4.0199 -8.3393 -1.2660 32 1 3.1964 -10.6264 -1.4527 33 1 0.9742 -12.4008 -0.6748 34 1 -1.9552 -10.0540 2.3303 35 1 -1.0923 -8.4979 2.2812 36 1 -4.2981 -7.7889 0.6477 37 1 0.5967 -7.2357 1.0475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186625.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:21 Heat of formation + Delta-G solvation = -52.156001 kcal Electronic energy + Delta-G solvation = -25188.696137 eV Core-core repulsion = 21251.067431 eV Total energy + Delta-G solvation = -3937.628706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62748 -41.37003 -41.01956 -38.25895 -37.29949 -35.45918 -34.63321 -34.59271 -31.80264 -31.39989 -29.31550 -28.70024 -27.66228 -24.54503 -23.79857 -22.95173 -21.73947 -21.49170 -19.93112 -19.41106 -18.94491 -18.37510 -17.90658 -17.67824 -17.22761 -16.89097 -16.85864 -16.48767 -16.04697 -15.68212 -15.47464 -15.32531 -14.98706 -14.64803 -14.41482 -14.24990 -13.84895 -13.70352 -13.45877 -13.17932 -13.06163 -12.89609 -12.72692 -12.63126 -12.38881 -12.05564 -11.89627 -11.75698 -11.24100 -11.17514 -11.14739 -10.87291 -10.30364 -9.16185 -8.97033 -8.68560 -8.36038 -6.14287 -0.18234 0.46403 0.95964 1.03042 1.22757 1.35679 1.42392 1.44846 1.55551 1.65519 2.05259 2.14298 2.25753 2.81886 2.98788 3.26040 3.39869 3.53884 3.86056 3.92509 3.99448 4.04433 4.17476 4.20998 4.25082 4.27559 4.46211 4.52691 4.68804 4.95042 5.22610 5.24240 5.41048 5.41503 5.41983 5.54336 5.78077 5.96455 6.18862 6.33923 6.56095 6.75951 7.05412 7.06310 8.73072 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.002834 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.117573 B = 9876.282222 C =11451.619464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.086 0.914 9 S -0.151 6.151 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.541 6.541 13 N -0.653 5.653 14 C 0.190 3.810 15 C -0.173 4.173 16 C -0.008 4.008 17 C -0.207 4.207 18 C 0.094 3.906 19 N -0.281 5.281 20 N -0.409 5.409 21 C 0.151 3.849 22 C 0.461 3.539 23 O -0.547 6.547 24 O -0.504 6.504 25 C 0.129 3.871 26 C -0.179 4.179 27 H 0.271 0.729 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.434 0.566 31 H 0.168 0.832 32 H 0.179 0.821 33 H 0.238 0.762 34 H 0.169 0.831 35 H 0.147 0.853 36 H 0.430 0.570 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.492 -23.133 2.428 24.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.076 5.924 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.417 6.417 13 N -0.301 5.301 14 C 0.092 3.908 15 C -0.194 4.194 16 C -0.028 4.028 17 C -0.214 4.214 18 C -0.101 4.101 19 N -0.093 5.093 20 N -0.198 5.198 21 C 0.028 3.972 22 C 0.302 3.698 23 O -0.436 6.436 24 O -0.318 6.318 25 C 0.015 3.985 26 C -0.204 4.204 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.274 0.726 31 H 0.185 0.815 32 H 0.196 0.804 33 H 0.254 0.746 34 H 0.187 0.813 35 H 0.164 0.836 36 H 0.292 0.708 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.464 -23.928 2.965 24.521 hybrid contribution 1.551 2.364 -0.694 2.912 sum 6.015 -21.564 2.271 22.502 Atomic orbital electron populations 1.70184 1.08014 1.28601 1.48046 1.26133 0.95946 1.03363 0.93748 0.84950 0.78271 0.76000 0.78752 1.19421 1.20473 1.17972 1.23207 0.95446 0.91786 1.58808 0.89590 1.85639 1.10302 0.99331 1.97095 1.23360 1.03843 0.93042 1.07611 1.20368 0.86221 0.86807 0.74518 1.90721 1.17401 1.85617 1.47944 1.43309 1.11581 1.02722 1.72469 1.17723 0.93798 0.84379 0.94898 1.20810 1.03292 0.92710 1.02588 1.20644 0.91838 0.96160 0.94198 1.19331 1.00213 0.93904 1.08001 1.24644 0.90129 0.99534 0.95831 1.76623 1.21799 0.94446 1.16428 1.47879 1.17096 1.06475 1.48346 1.21103 0.84603 1.01424 0.90109 1.24296 0.82600 0.74427 0.88432 1.90764 1.77732 1.56067 1.19079 1.84439 1.32600 1.68606 1.46114 1.18838 0.88757 0.94203 0.96743 1.19973 0.99817 0.93373 1.07199 0.92036 0.86259 0.86444 0.72593 0.81476 0.80351 0.74597 0.81326 0.83592 0.70785 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.44 13.22 21.65 0.29 -55.16 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.54 -30.30 9.50 67.96 0.65 -29.65 16 8 H 0.09 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.14 20.57 -56.49 -1.16 -9.31 16 10 C -0.13 -4.73 6.16 71.24 0.44 -4.30 16 11 C 0.53 18.93 7.68 87.66 0.67 19.61 16 12 O -0.54 -24.53 13.28 -3.07 -0.04 -24.57 16 13 N -0.65 -16.07 5.33 -303.43 -1.62 -17.69 16 14 C 0.19 4.88 6.30 38.18 0.24 5.13 16 15 C -0.17 -3.04 9.87 22.13 0.22 -2.82 16 16 C -0.01 -0.12 10.05 22.27 0.22 0.10 16 17 C -0.21 -4.59 6.17 -21.35 -0.13 -4.72 16 18 C 0.09 1.81 12.05 85.78 1.03 2.84 16 19 N -0.28 -7.04 12.44 -56.22 -0.70 -7.74 16 20 N -0.41 -11.06 3.16 -343.38 -1.08 -12.14 16 21 C 0.15 3.27 7.01 85.63 0.60 3.87 16 22 C 0.46 12.49 8.40 71.24 0.60 13.09 16 23 O -0.55 -20.11 17.19 21.97 0.38 -19.73 16 24 O -0.50 -10.53 13.42 -51.40 -0.69 -11.22 16 25 C 0.13 3.71 6.88 39.15 0.27 3.98 16 26 C -0.18 -5.58 8.66 22.49 0.19 -5.38 16 27 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 28 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 29 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.43 6.68 8.82 -92.71 -0.82 5.86 16 31 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 33 H 0.24 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.17 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.43 6.14 9.10 -74.05 -0.67 5.46 16 37 H 0.11 4.13 6.20 -2.91 -0.02 4.12 16 Total: -1.00 -91.40 350.68 2.54 -88.87 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.33 Total: 20.92 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.47 Total: 2.93 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -3.12 Total: -92.73 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.35 Total: -55.53 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.31 kcal Total: -91.40 2.54 -88.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186625.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.709 kcal (2) G-P(sol) polarization free energy of solvation -91.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds