Wall clock time and date at job start Tue Mar 31 2020 19:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48508 * 109.47028 * 269.99600 * 3 2 1 5 5 H 1.48497 * 109.47433 * 29.99979 * 3 2 1 6 6 H 1.48500 * 109.47121 * 150.00271 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.64965 * 178.98958 * 13 12 11 15 15 O 1.21709 * 119.99730 * 179.97438 * 14 13 12 16 16 C 1.46520 * 119.99967 * 359.97133 * 14 13 12 17 17 C 1.36624 * 125.17984 * 180.02562 * 16 14 13 18 18 C 1.36858 * 114.71481 * 180.02562 * 17 16 14 19 19 C 1.36377 * 114.78668 * 0.02562 * 18 17 16 20 20 C 1.47892 * 125.14791 * 179.97438 * 19 18 17 21 21 N 1.34210 * 126.70247 * 0.02562 * 20 19 18 22 22 N 1.28979 * 107.25199 * 180.02562 * 21 20 19 23 23 N 1.28719 * 108.99666 * 359.97438 * 22 21 20 24 24 H 0.96999 * 125.31386 * 180.02562 * 23 22 21 25 25 N 1.28867 * 109.36366 * 359.73205 * 23 22 21 26 26 S 1.75836 * 109.70533 * 359.72929 * 19 18 17 27 27 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 28 28 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 29 29 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 30 30 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 31 31 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 32 32 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 33 33 H 1.09001 * 109.88372 * 218.38832 * 12 11 9 34 34 H 1.08001 * 122.64004 * 359.97438 * 17 16 14 35 35 H 1.08001 * 122.60378 * 180.02562 * 18 17 16 36 36 H 1.09009 * 110.36844 * 265.29198 * 27 13 12 37 37 H 1.09002 * 110.37005 * 142.96697 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7040 -4.7411 2.1546 15 8 -1.5561 -4.0794 2.7180 16 6 -0.7440 -6.2038 2.2292 17 6 -1.6861 -6.9324 2.8988 18 6 -1.5176 -8.2887 2.8277 19 6 -0.4369 -8.6932 2.1009 20 6 -0.0404 -10.1002 1.8760 21 7 -0.6654 -11.1936 2.3397 22 7 -0.0038 -12.2187 1.9214 23 7 0.9982 -11.8138 1.2222 24 1 1.6518 -12.3885 0.7938 25 7 0.9938 -10.5260 1.1750 26 16 0.4098 -7.2891 1.4658 27 6 0.4363 -2.6710 1.3058 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2208 -1.8683 -1.2404 30 1 2.5435 -4.0093 -0.9176 31 1 3.0876 -3.4620 0.7006 32 1 0.9492 -5.4571 -0.0284 33 1 1.9703 -5.3809 1.4345 34 1 -2.4992 -6.4740 3.4421 35 1 -2.1884 -8.9845 3.3097 36 1 0.9845 -2.2567 2.1520 37 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609494621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:37 Heat of formation + Delta-G solvation = 81.512430 kcal Electronic energy + Delta-G solvation = -25647.125649 eV Core-core repulsion = 21747.585992 eV Total energy + Delta-G solvation = -3899.539657 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.73099 -39.59480 -37.96347 -36.88718 -34.60035 -34.40389 -33.65759 -32.24562 -30.58045 -29.65638 -27.97340 -26.25208 -24.97958 -24.71023 -23.11732 -22.60891 -20.64200 -19.86171 -19.70407 -18.36244 -17.62446 -17.44403 -17.21307 -16.05114 -15.81466 -15.33494 -15.20416 -14.63966 -14.42878 -14.12339 -13.55062 -13.41801 -13.18264 -12.96367 -12.88940 -12.76775 -12.28371 -12.11715 -11.80571 -11.68469 -11.60762 -11.47014 -11.18575 -11.10751 -11.05282 -10.77343 -10.58095 -10.53451 -10.25654 -9.68710 -9.44328 -8.76357 -8.70112 -8.69275 -8.45134 -7.89445 -6.34341 -4.44641 0.01836 0.81983 1.22757 1.72072 1.76228 1.93128 2.59580 3.17158 3.25582 3.27488 3.40190 3.43267 3.49802 4.05780 4.21735 4.75540 4.93238 4.96964 5.07953 5.19989 5.22637 5.39869 5.46138 5.66730 5.83930 5.86968 5.93251 6.04909 6.15888 6.21696 6.38127 6.61971 6.74662 6.83050 7.17315 7.26152 7.68164 7.82188 7.91440 8.01370 8.51172 8.59853 9.24746 9.35123 10.72743 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.002731 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.601479 B =10248.749797 C =10967.086502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.111 4.111 12 C 0.089 3.911 13 N -0.601 5.601 14 C 0.588 3.412 15 O -0.534 6.534 16 C -0.219 4.219 17 C -0.078 4.078 18 C -0.082 4.082 19 C -0.158 4.158 20 C 0.255 3.745 21 N -0.262 5.262 22 N -0.049 5.049 23 N -0.225 5.225 24 H 0.477 0.523 25 N -0.294 5.294 26 S 0.249 5.751 27 C 0.095 3.905 28 H 0.272 0.728 29 H 0.385 0.615 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.065 0.935 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.736 -19.487 2.274 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.393 6.393 11 C -0.149 4.149 12 C -0.036 4.036 13 N -0.332 5.332 14 C 0.375 3.625 15 O -0.413 6.413 16 C -0.342 4.342 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.279 4.279 20 C -0.025 4.025 21 N -0.136 5.136 22 N -0.044 5.044 23 N -0.071 5.071 24 H 0.331 0.669 25 N -0.146 5.146 26 S 0.518 5.482 27 C -0.026 4.026 28 H 0.082 0.918 29 H 0.237 0.763 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.084 0.916 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.679 -20.047 1.657 20.449 hybrid contribution -0.681 1.127 0.668 1.477 sum 2.998 -18.919 2.324 19.296 Atomic orbital electron populations 1.69641 1.06007 1.28112 1.49379 1.25092 0.95059 0.99851 0.93242 0.86380 0.79757 0.82311 0.78335 1.20356 1.20969 1.19671 1.21454 0.93732 0.89896 1.52698 0.91348 1.19606 0.86084 0.91706 0.81723 1.86078 1.53929 1.52170 1.47107 1.22599 0.97590 0.94377 1.00382 1.22162 0.89441 0.96535 0.95482 1.48657 1.25416 1.10330 1.48824 1.16527 0.81605 0.84565 0.79788 1.90826 1.38474 1.65130 1.46895 1.25020 1.02868 0.98012 1.08315 1.20454 0.99352 0.91982 0.99246 1.20394 0.96750 0.95673 0.98943 1.22231 1.04047 0.91570 1.10076 1.22453 0.90227 0.94004 0.95857 1.76179 1.22536 0.94574 1.20294 1.78903 0.96692 1.22249 1.06545 1.47671 1.21349 1.03948 1.34182 0.66895 1.75073 1.22654 0.94197 1.22697 1.84732 1.25536 0.91178 1.46756 1.23384 1.03133 0.75621 1.00477 0.91813 0.76334 0.90289 0.89985 0.91375 0.91897 0.82334 0.82809 0.91640 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.09 10.68 55.43 0.59 -22.50 16 2 C 0.07 1.79 5.27 -17.82 -0.09 1.69 16 3 Si 0.90 19.74 29.54 -169.99 -5.02 14.71 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.54 -13.43 8.26 -34.44 -0.28 -13.71 16 8 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 9 C 0.25 5.77 0.89 -89.63 -0.08 5.69 16 10 O -0.58 -14.36 13.19 -35.23 -0.46 -14.83 16 11 C -0.11 -2.08 6.13 -24.90 -0.15 -2.23 16 12 C 0.09 1.50 5.16 -3.07 -0.02 1.48 16 13 N -0.60 -12.05 3.33 -172.12 -0.57 -12.63 16 14 C 0.59 11.67 7.81 -12.92 -0.10 11.57 16 15 O -0.53 -12.27 17.06 5.18 0.09 -12.18 16 16 C -0.22 -3.44 6.37 -36.83 -0.23 -3.67 16 17 C -0.08 -1.04 9.88 -40.66 -0.40 -1.45 16 18 C -0.08 -0.97 10.09 -40.75 -0.41 -1.38 16 19 C -0.16 -1.96 6.48 -36.30 -0.24 -2.19 16 20 C 0.25 3.07 8.16 -156.25 -1.28 1.79 16 21 N -0.26 -3.15 12.51 32.08 0.40 -2.75 16 22 N -0.05 -0.48 13.46 60.35 0.81 0.33 16 23 N -0.23 -1.65 7.90 60.35 0.48 -1.18 16 24 H 0.48 1.08 8.96 -340.34 -3.05 -1.97 16 25 N -0.29 -3.05 12.41 32.09 0.40 -2.65 16 26 S 0.25 3.21 18.57 -107.50 -2.00 1.22 16 27 C 0.09 2.19 5.51 -2.53 -0.01 2.18 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.39 9.84 7.18 45.56 0.33 10.17 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 32 H 0.07 1.09 6.80 -51.93 -0.35 0.74 16 33 H 0.06 0.90 6.98 -51.93 -0.36 0.54 16 34 H 0.16 2.00 8.03 -52.49 -0.42 1.58 16 35 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.07 1.54 8.03 -51.92 -0.42 1.13 16 37 H 0.09 2.32 7.48 -51.93 -0.39 1.93 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -30.73 333.75 -9.03 -39.76 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.47 Total: 7.89 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.30 Total: -0.23 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 2.11 Total: -41.37 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.38 Total: -27.00 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.00 Total: 1.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.73 -9.03 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.271 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds