Wall clock time and date at job start Tue Mar 31 2020 19:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48508 * 109.47028 * 269.99600 * 3 2 1 5 5 H 1.48497 * 109.47433 * 29.99979 * 3 2 1 6 6 H 1.48500 * 109.47121 * 150.00271 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.64965 * 178.98958 * 13 12 11 15 15 O 1.21709 * 119.99730 * 179.97438 * 14 13 12 16 16 C 1.46520 * 119.99967 * 359.97133 * 14 13 12 17 17 C 1.36624 * 125.17984 * 180.02562 * 16 14 13 18 18 C 1.36858 * 114.71481 * 180.02562 * 17 16 14 19 19 C 1.36377 * 114.78668 * 0.02562 * 18 17 16 20 20 C 1.47892 * 125.14791 * 179.97438 * 19 18 17 21 21 N 1.34210 * 126.70247 * 0.02562 * 20 19 18 22 22 N 1.28979 * 107.25199 * 180.02562 * 21 20 19 23 23 N 1.28719 * 108.99666 * 359.97438 * 22 21 20 24 24 H 0.96999 * 125.31386 * 180.02562 * 23 22 21 25 25 N 1.28867 * 109.36366 * 359.73205 * 23 22 21 26 26 S 1.75836 * 109.70533 * 359.72929 * 19 18 17 27 27 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 28 28 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 29 29 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 30 30 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 31 31 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 32 32 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 33 33 H 1.09001 * 109.88372 * 218.38832 * 12 11 9 34 34 H 1.08001 * 122.64004 * 359.97438 * 17 16 14 35 35 H 1.08001 * 122.60378 * 180.02562 * 18 17 16 36 36 H 1.09009 * 110.36844 * 265.29198 * 27 13 12 37 37 H 1.09002 * 110.37005 * 142.96697 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7040 -4.7411 2.1546 15 8 -1.5561 -4.0794 2.7180 16 6 -0.7440 -6.2038 2.2292 17 6 -1.6861 -6.9324 2.8988 18 6 -1.5176 -8.2887 2.8277 19 6 -0.4369 -8.6932 2.1009 20 6 -0.0404 -10.1002 1.8760 21 7 -0.6654 -11.1936 2.3397 22 7 -0.0038 -12.2187 1.9214 23 7 0.9982 -11.8138 1.2222 24 1 1.6518 -12.3885 0.7938 25 7 0.9938 -10.5260 1.1750 26 16 0.4098 -7.2891 1.4658 27 6 0.4363 -2.6710 1.3058 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2208 -1.8683 -1.2404 30 1 2.5435 -4.0093 -0.9176 31 1 3.0876 -3.4620 0.7006 32 1 0.9492 -5.4571 -0.0284 33 1 1.9703 -5.3809 1.4345 34 1 -2.4992 -6.4740 3.4421 35 1 -2.1884 -8.9845 3.3097 36 1 0.9845 -2.2567 2.1520 37 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609494621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:36 Heat of formation + Delta-G solvation = 58.089977 kcal Electronic energy + Delta-G solvation = -25648.141322 eV Core-core repulsion = 21747.585992 eV Total energy + Delta-G solvation = -3900.555331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.52261 -41.14474 -39.32004 -38.28027 -36.15891 -35.41131 -34.51694 -34.18404 -32.13373 -30.87040 -29.58737 -27.67656 -26.31735 -25.66497 -24.39569 -23.74371 -21.91381 -21.42619 -20.79358 -19.39716 -19.13496 -18.88267 -18.22300 -17.35492 -17.20118 -16.87896 -16.79783 -16.19986 -15.82066 -15.11875 -15.03897 -14.87872 -14.76444 -14.27404 -14.16137 -13.72995 -13.69573 -13.52355 -13.37946 -13.10908 -12.86133 -12.72043 -12.47907 -12.34890 -12.29942 -12.24687 -12.17780 -12.00996 -11.79965 -11.29871 -11.16474 -10.65230 -10.35697 -9.86011 -9.70265 -9.41290 -8.24955 -6.42069 -1.02871 0.04094 0.17740 0.66744 0.76914 1.34901 1.43777 1.46493 1.55634 1.57000 1.92792 2.10182 2.39646 2.55715 3.01205 3.21289 3.43960 3.70198 4.03826 4.06706 4.11430 4.14208 4.25355 4.27993 4.46551 4.48657 4.70253 4.90357 4.98911 5.01005 5.03546 5.21393 5.23133 5.37252 5.44813 5.55756 5.76065 6.03416 6.47335 6.66817 6.97691 7.02063 7.29436 7.36616 8.80456 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.002731 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.601479 B =10248.749797 C =10967.086502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.106 4.106 12 C 0.090 3.910 13 N -0.607 5.607 14 C 0.585 3.415 15 O -0.581 6.581 16 C -0.260 4.260 17 C -0.059 4.059 18 C -0.082 4.082 19 C -0.145 4.145 20 C 0.238 3.762 21 N -0.280 5.280 22 N -0.049 5.049 23 N -0.194 5.194 24 H 0.497 0.503 25 N -0.294 5.294 26 S 0.280 5.720 27 C 0.107 3.893 28 H 0.270 0.730 29 H 0.377 0.623 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.052 0.948 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 -22.135 2.069 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.091 0.909 9 C 0.193 3.807 10 O -0.397 6.397 11 C -0.144 4.144 12 C -0.033 4.033 13 N -0.338 5.338 14 C 0.375 3.625 15 O -0.463 6.463 16 C -0.382 4.382 17 C -0.093 4.093 18 C -0.116 4.116 19 C -0.267 4.267 20 C -0.043 4.043 21 N -0.153 5.153 22 N -0.044 5.044 23 N -0.045 5.045 24 H 0.357 0.643 25 N -0.147 5.147 26 S 0.550 5.450 27 C -0.016 4.016 28 H 0.079 0.921 29 H 0.226 0.774 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.179 0.821 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.423 -22.749 1.428 23.430 hybrid contribution -1.180 1.749 0.710 2.226 sum 4.243 -21.000 2.138 21.531 Atomic orbital electron populations 1.69764 1.07201 1.28514 1.50127 1.25831 0.95725 1.02868 0.93074 0.85449 0.78716 0.78605 0.78231 1.20071 1.21360 1.18854 1.21794 0.94127 0.90921 1.52397 0.90881 1.19853 0.86595 0.93323 0.80962 1.86069 1.53980 1.51734 1.47943 1.22617 0.97207 0.92800 1.01776 1.22312 0.88652 0.96133 0.96216 1.48668 1.26571 1.09183 1.49405 1.17068 0.80560 0.86298 0.78614 1.90781 1.40055 1.66767 1.48742 1.24583 1.05834 0.95982 1.11842 1.20620 0.98427 0.92611 0.97646 1.20507 0.97070 0.95010 0.99004 1.22375 1.03592 0.91873 1.08867 1.22386 0.91063 0.93815 0.97002 1.76174 1.23319 0.94803 1.21046 1.78866 0.97083 1.21670 1.06790 1.47744 1.20812 1.03385 1.32600 0.64338 1.75032 1.22118 0.95326 1.22247 1.84417 1.24303 0.90286 1.45975 1.22946 1.00683 0.77664 1.00266 0.92056 0.77366 0.88947 0.88485 0.90165 0.88653 0.82079 0.80539 0.92986 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.09 10.68 21.45 0.23 -48.86 16 2 C 0.03 1.32 5.27 84.66 0.45 1.77 16 3 Si 0.96 40.78 29.54 68.60 2.03 42.80 16 4 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.55 -27.77 8.26 25.60 0.21 -27.56 16 8 H 0.07 3.50 7.78 -2.92 -0.02 3.48 16 9 C 0.23 10.91 0.89 -10.15 -0.01 10.90 16 10 O -0.59 -29.62 13.19 -148.98 -1.96 -31.58 16 11 C -0.11 -3.81 6.13 31.78 0.19 -3.62 16 12 C 0.09 2.91 5.16 86.73 0.45 3.36 16 13 N -0.61 -24.70 3.33 -816.66 -2.72 -27.42 16 14 C 0.58 23.75 7.81 86.40 0.68 24.42 16 15 O -0.58 -28.01 17.06 -4.38 -0.07 -28.08 16 16 C -0.26 -7.98 6.37 24.05 0.15 -7.83 16 17 C -0.06 -1.53 9.88 21.57 0.21 -1.31 16 18 C -0.08 -1.73 10.09 21.51 0.22 -1.52 16 19 C -0.15 -3.23 6.48 24.39 0.16 -3.07 16 20 C 0.24 5.04 8.16 137.10 1.12 6.16 16 21 N -0.28 -5.99 12.51 -52.42 -0.66 -6.65 16 22 N -0.05 -0.82 13.46 37.02 0.50 -0.32 16 23 N -0.19 -2.20 7.90 37.02 0.29 -1.90 16 24 H 0.50 0.46 8.96 -347.51 -3.12 -2.65 16 25 N -0.29 -5.14 12.41 -52.37 -0.65 -5.79 16 26 S 0.28 6.60 18.57 -56.49 -1.05 5.56 16 27 C 0.11 5.15 5.51 86.86 0.48 5.63 16 28 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 29 H 0.38 20.07 7.18 -74.06 -0.53 19.54 16 30 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.10 3.17 8.02 -2.39 -0.02 3.15 16 32 H 0.08 2.40 6.80 -2.39 -0.02 2.39 16 33 H 0.10 2.47 6.98 -2.39 -0.02 2.45 16 34 H 0.16 4.00 8.03 -2.91 -0.02 3.98 16 35 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.05 2.57 8.03 -2.38 -0.02 2.55 16 37 H 0.05 2.70 7.48 -2.39 -0.02 2.68 16 Total: -1.00 -68.33 333.75 -2.23 -70.57 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -2.47 Total: 24.37 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 4.31 Total: 7.32 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -3.00 Total: -90.95 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -2.04 Total: -59.67 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 6.60 SS G_CDS: -1.05 Total: 5.56 kcal Total: -68.33 -2.23 -70.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.656 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds