Wall clock time and date at job start Tue Mar 31 2020 19:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99509 * 2 1 4 4 H 1.48501 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47431 * 299.99914 * 3 2 1 6 6 H 1.48499 * 109.47163 * 60.00416 * 3 2 1 7 7 C 1.37873 * 120.00546 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99522 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.88910 * 303.87902 * 9 7 2 11 11 C 1.55158 * 111.00227 * 179.97438 * 9 7 2 12 12 C 1.54327 * 102.94364 * 206.38226 * 11 9 7 13 13 N 1.47018 * 107.26875 * 22.19470 * 12 11 9 14 14 C 1.34781 * 125.64770 * 181.01966 * 13 12 11 15 15 O 1.21711 * 119.99919 * 180.02562 * 14 13 12 16 16 C 1.46520 * 119.99817 * 0.02562 * 14 13 12 17 17 C 1.36629 * 125.17554 * 180.02562 * 16 14 13 18 18 C 1.36859 * 114.71072 * 180.25139 * 17 16 14 19 19 C 1.36385 * 114.78742 * 359.49594 * 18 17 16 20 20 C 1.47890 * 125.14605 * 180.21095 * 19 18 17 21 21 N 1.34211 * 126.70215 * 0.02562 * 20 19 18 22 22 N 1.28986 * 107.24466 * 179.83252 * 21 20 19 23 23 N 1.28715 * 109.00150 * 0.43919 * 22 21 20 24 24 H 0.97003 * 125.31922 * 179.74562 * 23 22 21 25 25 N 1.28879 * 109.36471 * 359.71678 * 23 22 21 26 26 S 1.75833 * 125.17894 * 359.97438 * 16 14 13 27 27 C 1.47429 * 108.70417 * 1.28490 * 13 12 11 28 28 H 0.96996 * 120.00356 * 359.97438 * 1 2 3 29 29 H 0.96696 * 113.99979 * 56.11871 * 10 9 7 30 30 H 1.09000 * 110.71908 * 88.02210 * 11 9 7 31 31 H 1.08994 * 110.72008 * 324.74988 * 11 9 7 32 32 H 1.08999 * 109.88416 * 262.77300 * 12 11 9 33 33 H 1.09000 * 110.00894 * 141.68405 * 12 11 9 34 34 H 1.08002 * 122.64205 * 359.97424 * 17 16 14 35 35 H 1.07993 * 122.60606 * 179.70756 * 18 17 16 36 36 H 1.09003 * 110.36402 * 94.48228 * 27 13 12 37 37 H 1.09002 * 110.36705 * 216.80187 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 8 0.3515 -2.5690 1.1063 11 6 2.2276 -3.7049 -0.0028 12 6 1.3979 -4.8209 -0.6721 13 7 0.3465 -4.1672 -1.4650 14 6 -0.6001 -4.7990 -2.1870 15 8 -1.4240 -4.1532 -2.8080 16 6 -0.6375 -6.2632 -2.2243 17 6 -1.5465 -7.0100 -2.9190 18 6 -1.3863 -8.3638 -2.7988 19 6 -0.3391 -8.7481 -2.0140 20 6 0.0444 -10.1483 -1.7320 21 7 -0.5611 -11.2541 -2.1921 22 7 0.0813 -12.2672 -1.7182 23 7 1.0476 -11.8433 -0.9811 24 1 1.6788 -12.4059 -0.5057 25 7 1.0458 -10.5545 -0.9739 26 16 0.4815 -7.3269 -1.3827 27 6 0.5031 -2.7062 -1.3448 28 1 -0.4850 0.8400 0.0004 29 1 -0.2781 -1.8362 1.1486 30 1 2.4976 -3.9834 1.0159 31 1 3.1172 -3.4802 -0.5909 32 1 0.9467 -5.4555 0.0906 33 1 2.0349 -5.4197 -1.3231 34 1 -2.3325 -6.5668 -3.5126 35 1 -2.0362 -9.0727 -3.2900 36 1 1.0941 -2.3185 -2.1746 37 1 -0.4727 -2.2214 -1.3138 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609494625.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:40 Heat of formation + Delta-G solvation = 81.628955 kcal Electronic energy + Delta-G solvation = -25640.767356 eV Core-core repulsion = 21741.232752 eV Total energy + Delta-G solvation = -3899.534604 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.72999 -39.59723 -37.96095 -36.88593 -34.60022 -34.41090 -33.65868 -32.20874 -30.58678 -29.65851 -27.99063 -26.25500 -24.98058 -24.71074 -23.11736 -22.60949 -20.64258 -19.86184 -19.70262 -18.36456 -17.63034 -17.44426 -17.22826 -16.05537 -15.81448 -15.33479 -15.19985 -14.65588 -14.42636 -14.12356 -13.55131 -13.41875 -13.18251 -12.96567 -12.89170 -12.77021 -12.28811 -12.12047 -11.79964 -11.68252 -11.59862 -11.47159 -11.19502 -11.11703 -11.04703 -10.77361 -10.58179 -10.52062 -10.24616 -9.69909 -9.46840 -8.76377 -8.70332 -8.69462 -8.44664 -7.89611 -6.35117 -4.44905 0.01579 0.81854 1.22529 1.71871 1.75979 1.93029 2.59333 3.16040 3.25579 3.28361 3.39951 3.42638 3.49185 4.05713 4.21449 4.75016 4.92703 4.96818 5.07744 5.19769 5.22767 5.39657 5.45763 5.67501 5.83803 5.87953 5.92909 6.04784 6.15546 6.21454 6.37686 6.61090 6.73411 6.81819 7.15617 7.24833 7.68321 7.82056 7.90961 8.00402 8.50438 8.59421 9.25141 9.39456 10.72283 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.002726 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.086545 B =10267.141665 C =10982.521142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.111 4.111 12 C 0.089 3.911 13 N -0.600 5.600 14 C 0.588 3.412 15 O -0.534 6.534 16 C -0.220 4.220 17 C -0.078 4.078 18 C -0.083 4.083 19 C -0.158 4.158 20 C 0.255 3.745 21 N -0.262 5.262 22 N -0.049 5.049 23 N -0.225 5.225 24 H 0.477 0.523 25 N -0.294 5.294 26 S 0.249 5.751 27 C 0.093 3.907 28 H 0.272 0.728 29 H 0.387 0.613 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.066 0.934 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 -19.541 -1.819 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.149 4.149 12 C -0.036 4.036 13 N -0.332 5.332 14 C 0.375 3.625 15 O -0.414 6.414 16 C -0.342 4.342 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.279 4.279 20 C -0.025 4.025 21 N -0.136 5.136 22 N -0.044 5.044 23 N -0.071 5.071 24 H 0.331 0.669 25 N -0.146 5.146 26 S 0.518 5.482 27 C -0.028 4.028 28 H 0.082 0.918 29 H 0.240 0.760 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.084 0.916 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.790 -20.082 -1.131 20.468 hybrid contribution -0.673 1.106 -0.733 1.487 sum 3.117 -18.977 -1.864 19.321 Atomic orbital electron populations 1.69564 1.06042 1.28036 1.49680 1.25090 0.95049 0.99878 0.93226 0.86320 0.80012 0.82585 0.77822 1.19549 1.20728 1.20710 1.21511 0.93777 0.89921 1.52401 0.91279 1.19633 0.85714 0.91713 0.82036 1.86063 1.51049 1.53071 1.49186 1.22606 0.97797 0.94170 1.00376 1.22166 0.90150 0.96737 0.94560 1.48647 1.28427 1.10192 1.45927 1.16533 0.81383 0.84482 0.80082 1.90826 1.39305 1.66188 1.45041 1.25016 1.03611 0.98019 1.07594 1.20455 0.99382 0.91813 0.99373 1.20395 0.96989 0.95865 0.98514 1.22235 1.04715 0.91691 1.09280 1.22454 0.90824 0.93939 0.95330 1.76184 1.22105 0.94726 1.20565 1.78903 0.97938 1.22372 1.05173 1.47674 1.23095 1.03740 1.32640 0.66892 1.75080 1.22598 0.94496 1.22443 1.84732 1.27953 0.91098 1.44388 1.23454 1.02982 0.75546 1.00813 0.91818 0.76019 0.90244 0.90026 0.91375 0.91922 0.82334 0.82809 0.91603 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.12 10.72 55.43 0.59 -22.53 16 2 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 3 Si 0.91 19.73 29.54 -169.99 -5.02 14.71 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -13.39 8.25 -34.44 -0.28 -13.67 16 8 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 9 C 0.25 5.79 0.89 -89.51 -0.08 5.71 16 10 O -0.58 -14.45 13.19 -35.23 -0.46 -14.92 16 11 C -0.11 -2.08 6.12 -24.89 -0.15 -2.23 16 12 C 0.09 1.49 5.17 -3.07 -0.02 1.48 16 13 N -0.60 -12.02 3.32 -171.97 -0.57 -12.59 16 14 C 0.59 11.65 7.81 -12.92 -0.10 11.54 16 15 O -0.53 -12.25 17.06 5.18 0.09 -12.16 16 16 C -0.22 -3.43 6.37 -36.83 -0.23 -3.67 16 17 C -0.08 -1.04 9.88 -40.66 -0.40 -1.44 16 18 C -0.08 -0.97 10.09 -40.75 -0.41 -1.38 16 19 C -0.16 -1.96 6.48 -36.30 -0.24 -2.19 16 20 C 0.25 3.06 8.16 -156.25 -1.28 1.79 16 21 N -0.26 -3.15 12.51 32.08 0.40 -2.75 16 22 N -0.05 -0.48 13.46 60.35 0.81 0.34 16 23 N -0.23 -1.65 7.90 60.35 0.48 -1.18 16 24 H 0.48 1.08 8.96 -340.32 -3.05 -1.97 16 25 N -0.29 -3.05 12.41 32.09 0.40 -2.65 16 26 S 0.25 3.21 18.56 -107.50 -2.00 1.22 16 27 C 0.09 2.14 5.64 -2.41 -0.01 2.13 16 28 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.39 9.99 6.93 45.56 0.32 10.31 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 32 H 0.07 1.09 6.81 -51.93 -0.35 0.74 16 33 H 0.06 0.89 6.96 -51.93 -0.36 0.53 16 34 H 0.16 2.00 8.03 -52.49 -0.42 1.57 16 35 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.07 1.53 8.04 -51.93 -0.42 1.12 16 37 H 0.09 2.25 7.64 -51.93 -0.40 1.85 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -30.76 333.83 -9.04 -39.80 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.49 Total: 7.92 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.30 Total: -0.25 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 2.11 Total: -41.36 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.38 Total: -27.07 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.00 Total: 1.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.76 -9.04 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494625.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.429 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds